RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 SMC5Q8IY18 1101 aa6.53□□□□□ -1.36
RIF1-203ENST00000428287 SPINK5Q9NQ38 1064 aaPredicted RBP6.53□□□□□ -1.36
RIF1-203ENST00000428287 E9PSI1 815 aa6.52□□□□□ -1.36
RIF1-203ENST00000428287 PCDHB15Q9Y5E8 787 aa6.52□□□□□ -1.36
RIF1-203ENST00000428287 DUOX2Q9NRD8 1548 aa6.52□□□□□ -1.37
RIF1-203ENST00000428287 BAZ2BQ9UIF8 2168 aaKnown RBP6.52□□□□□ -1.37
RIF1-203ENST00000428287 DDX11L8A8MPP1 907 aa6.52□□□□□ -1.37
RIF1-203ENST00000428287 INO80Q9ULG1 1556 aaPredicted RBP6.52□□□□□ -1.37
RIF1-203ENST00000428287 ZNF445P59923 1031 aa6.52□□□□□ -1.37
RIF1-203ENST00000428287 UPF2Q9HAU5 1272 aaKnown RBP6.52□□□□□ -1.37
RIF1-203ENST00000428287 DISP3Q9P2K9 1392 aa6.51□□□□□ -1.37
RIF1-203ENST00000428287 RSPH4AQ5TD94 716 aa6.51□□□□□ -1.37
RIF1-203ENST00000428287 SLKQ9H2G2 1235 aaPredicted RBP6.51□□□□□ -1.37
RIF1-203ENST00000428287 MCM5P33992 734 aa6.51□□□□□ -1.37
RIF1-203ENST00000428287 CCDC27Q2M243 656 aa6.51□□□□□ -1.37
RIF1-203ENST00000428287 RGS3P49796 1198 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 KIAA1211Q6ZU35 1233 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 NAP1L5Q96NT1 182 aaPredicted RBP6.5□□□□□ -1.37
RIF1-203ENST00000428287 POLR3AO14802 1390 aaPredicted RBP6.5□□□□□ -1.37
RIF1-203ENST00000428287 SKOR2Q2VWA4 1001 aaPredicted RBP6.5□□□□□ -1.37
RIF1-203ENST00000428287 SMAP1Q8IYB5 467 aaPredicted RBP6.5□□□□□ -1.37
RIF1-203ENST00000428287 PANK3Q9H999 370 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 PPLO60437 1756 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 DYNC1I1O14576 645 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 KIF20AO95235 890 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 RAB3GAP1Q15042 981 aa6.5□□□□□ -1.37
RIF1-203ENST00000428287 ZSCAN20P17040 1043 aaPredicted RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 PTMSP20962 102 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 PPP2R1AP30153 589 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 CFDP1Q9UEE9 299 aaPredicted RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 NOL7Q9UMY1 257 aaKnown RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 CFAP74Q9C0B2 1584 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 UTP14CQ5TAP6 766 aaKnown RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 KIF20BQ96Q89 1820 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 TET3O43151 1660 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 SAMD9LQ8IVG5 1584 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 KLHL40Q2TBA0 621 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 PMFBP1Q8TBY8 1022 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 PODXL2Q9NZ53 605 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 MAP3K4Q9Y6R4 1608 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 CT47B1P0C2W7 299 aaPredicted RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 HDAC1Q13547 482 aaPredicted RBP6.49□□□□□ -1.37
RIF1-203ENST00000428287 NBPF1Q3BBV0 1214 aa6.49□□□□□ -1.37
RIF1-203ENST00000428287 KIF2CQ99661 725 aa6.48□□□□□ -1.37
RIF1-203ENST00000428287 IQSEC2Q5JU85 1478 aa6.48□□□□□ -1.37
RIF1-203ENST00000428287 MED14O60244 1454 aa6.48□□□□□ -1.37
RIF1-203ENST00000428287 PRG4Q92954 1404 aaPredicted RBP6.48□□□□□ -1.37
RIF1-203ENST00000428287 CYP2E1P05181 493 aaPredicted RBP6.48□□□□□ -1.37
RIF1-203ENST00000428287 RARSP54136 660 aaKnown RBP6.48□□□□□ -1.37
RIF1-203ENST00000428287 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.48□□□□□ -1.37
RIF1-203ENST00000428287 CCDC173Q0VFZ6 552 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 IFT140Q96RY7 1462 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 TMF1P82094 1093 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 MYO5BQ9ULV0 1848 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 KIF16BQ96L93 1317 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 C22orf23Q9BZE7 217 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 SETD1AO15047 1707 aaKnown RBP6.47□□□□□ -1.37
RIF1-203ENST00000428287 PDS5BQ9NTI5 1447 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 SETBP1Q9Y6X0 1596 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 BCAR3O75815 825 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 CDCA8Q53HL2 280 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 WWC1Q8IX03 1113 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 ANKRD12Q6UB98 2062 aa6.47□□□□□ -1.37
RIF1-203ENST00000428287 KLHL34Q8N239 644 aa6.46□□□□□ -1.37
RIF1-203ENST00000428287 TRIM44Q96DX7 344 aaPredicted RBP6.46□□□□□ -1.37
RIF1-203ENST00000428287 LAMA4Q16363 1823 aa6.46□□□□□ -1.37
RIF1-203ENST00000428287 QRICH2Q9H0J4 1663 aa6.46□□□□□ -1.37
RIF1-203ENST00000428287 SENP3-EIF4A1A0A087X0R7 540 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 MAGI1Q96QZ7 1491 aaPredicted RBP6.46□□□□□ -1.38
RIF1-203ENST00000428287 UHRF1BP1LA0JNW5 1464 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 GTF2F1P35269 517 aaKnown RBP eCLIP6.46□□□□□ -1.38
RIF1-203ENST00000428287 SCAF11Q99590 1463 aaKnown RBP6.46□□□□□ -1.38
RIF1-203ENST00000428287 KNDC1Q76NI1 1749 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 FGD1P98174 961 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 WDR63Q8IWG1 891 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 RLBP1P12271 317 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 ZKSCAN5Q9Y2L8 839 aa6.46□□□□□ -1.38
RIF1-203ENST00000428287 NOS1P29475 1434 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 MYH9P35579 1960 aaKnown RBP6.45□□□□□ -1.38
RIF1-203ENST00000428287 MYH7P12883 1935 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 APAF1O14727 1248 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 TRPM2O94759 1503 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 MYH1P12882 1939 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 MYH2Q9UKX2 1941 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 MYH4Q9Y623 1939 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 ATP10BO94823 1461 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 ARHGEF28Q8N1W1 1705 aaKnown RBP6.45□□□□□ -1.38
RIF1-203ENST00000428287 NASPP49321 788 aaPredicted RBP6.45□□□□□ -1.38
RIF1-203ENST00000428287 BMP2KLQ5H9B9 411 aa6.45□□□□□ -1.38
RIF1-203ENST00000428287 TNPO1Q92973 898 aaKnown RBP6.45□□□□□ -1.38
RIF1-203ENST00000428287 PLB1Q6P1J6 1458 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 GBP4Q96PP9 640 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.44□□□□□ -1.38
RIF1-203ENST00000428287 DMRT2Q9Y5R5 561 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 PTPRTO14522 1441 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 KNSTRNQ9Y448 316 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 VWDEQ8N2E2 1590 aa6.44□□□□□ -1.38
RIF1-203ENST00000428287 BRPF1P55201 1214 aaPredicted RBP6.43□□□□□ -1.38
RIF1-203ENST00000428287 WDR43Q15061 677 aaKnown RBP eCLIP6.43□□□□□ -1.388e-6■■□□□ 11.7
RIF1-203ENST00000428287 TSPY4P0CV99 314 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms