RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 CCDC18Q5T9S5 1454 aa6.95□□□□□ -1.3
HERC4-206ENST00000427635 PLIN1O60240 522 aa6.95□□□□□ -1.3
HERC4-206ENST00000427635 TBC1D2BQ9UPU7 963 aa6.95□□□□□ -1.3
HERC4-206ENST00000427635 SYCP1Q15431 976 aa6.95□□□□□ -1.3
HERC4-206ENST00000427635 CDK5RAP3Q96JB5 506 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 TMOD2Q9NZR1 351 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 FAM177BA6PVY3 158 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 CLGNO14967 610 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 IBSPP21815 317 aaPredicted RBP6.94□□□□□ -1.3
HERC4-206ENST00000427635 CGNL1Q0VF96 1302 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 NAP1L1P55209 391 aaKnown RBP6.94□□□□□ -1.3
HERC4-206ENST00000427635 RNF20Q5VTR2 975 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 FMN1Q68DA7 1419 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 ATP2B2Q01814 1243 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 ANO2Q9NQ90 1003 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 ATP6V1DQ9Y5K8 247 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 ZNF710Q8N1W2 664 aa6.94□□□□□ -1.3
HERC4-206ENST00000427635 SMARCA2P51531 1590 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 ROCK1Q13464 1354 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 MINK1Q8N4C8 1332 aaPredicted RBP6.93□□□□□ -1.3
HERC4-206ENST00000427635 CDR1P51861 262 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 ESCO1Q5FWF5 840 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 CCDC173Q0VFZ6 552 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 ZKSCAN1P17029 563 aaPredicted RBP6.93□□□□□ -1.3
HERC4-206ENST00000427635 MATR3P43243 847 aaKnown RBP eCLIP6.93□□□□□ -1.39e-6■■■■□ 23
HERC4-206ENST00000427635 FOSBP53539 338 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 SART3Q15020 963 aaKnown RBP6.93□□□□□ -1.3
HERC4-206ENST00000427635 WASHC4Q2M389 1173 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 RALYLQ86SE5 291 aaKnown RBP6.93□□□□□ -1.3
HERC4-206ENST00000427635 PIAS4Q8N2W9 510 aaPredicted RBP6.93□□□□□ -1.3
HERC4-206ENST00000427635 MYO6Q9UM54 1294 aa6.93□□□□□ -1.3
HERC4-206ENST00000427635 BECN2A8MW95 431 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 GPS2Q13227 327 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 SIN3AQ96ST3 1273 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 BAZ1AQ9NRL2 1556 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 CENPJQ9HC77 1338 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 MYCNP04198 464 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 KRT18P05783 430 aaKnown RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 TNNT3P45378 269 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 JPH4Q96JJ6 628 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 SLKQ9H2G2 1235 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 SETD5Q9C0A6 1442 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 NEUROD6Q96NK8 337 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 POGZQ7Z3K3 1410 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 OFD1O75665 1012 aa6.92□□□□□ -1.3
HERC4-206ENST00000427635 TATP17735 454 aaPredicted RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 CCAR2Q8N163 923 aaKnown RBP6.92□□□□□ -1.3
HERC4-206ENST00000427635 AXDND1Q5T1B0 1012 aaPredicted RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 ZSCAN29Q8IWY8 852 aaPredicted RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 CCDC82Q8N4S0 544 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 ZRSR2Q15696 482 aaKnown RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 WDR78Q5VTH9 848 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 TOM1L2Q6ZVM7 507 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 CCDC146Q8IYE0 955 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 DRC1Q96MC2 740 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 FOXD4L6Q3SYB3 417 aaPredicted RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 FOXD4L3Q6VB84 417 aaPredicted RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 PTPRGP23470 1445 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 MIA2Q96PC5 1412 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 ERC2O15083 957 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 AIMP1Q12904 312 aaKnown RBP6.91□□□□□ -1.3
HERC4-206ENST00000427635 CNNM1Q9NRU3 951 aa6.91□□□□□ -1.3
HERC4-206ENST00000427635 PLEKHO1Q53GL0 409 aaPredicted RBP6.9□□□□□ -1.3
HERC4-206ENST00000427635 SCLT1Q96NL6 688 aa6.9□□□□□ -1.3
HERC4-206ENST00000427635 TSPYL4Q9UJ04 414 aa6.9□□□□□ -1.3
HERC4-206ENST00000427635 DCAF1Q9Y4B6 1507 aa6.9□□□□□ -1.3
HERC4-206ENST00000427635 TDRD9Q8NDG6 1382 aaKnown RBP6.9□□□□□ -1.31
HERC4-206ENST00000427635 ANKRD18AQ8IVF6 992 aa6.9□□□□□ -1.31
HERC4-206ENST00000427635 CRBNQ96SW2 442 aa6.9□□□□□ -1.31
HERC4-206ENST00000427635 HSPA5P11021 654 aaKnown RBP6.9□□□□□ -1.31
HERC4-206ENST00000427635 CABP4P57796 275 aa6.9□□□□□ -1.31
HERC4-206ENST00000427635 TTC39AQ5SRH9 613 aa6.9□□□□□ -1.31
HERC4-206ENST00000427635 PRDM16Q9HAZ2 1276 aa6.9□□□□□ -1.31
HERC4-206ENST00000427635 ERC1Q8IUD2 1116 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 MIER1Q8N108 512 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 NOP58Q9Y2X3 529 aaKnown RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 DHX57Q6P158 1386 aaKnown RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 CC2D2BQ6DHV5 1058 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 PPP4R3AQ6IN85 833 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 THEMISQ8N1K5 641 aaPredicted RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 MPHOSPH9Q99550 1183 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 ZNF692Q9BU19 519 aaPredicted RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 PDCL3Q9H2J4 239 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 TNIKQ9UKE5 1360 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 CCDC144AA2RUR9 1427 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 DIAPH1O60610 1272 aaKnown RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 CA8P35219 290 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 HSP90AA2PQ14568 343 aaPredicted RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 ABTB2Q8N961 1025 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 DMRT2Q9Y5R5 561 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 PHLDB1Q86UU1 1377 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 SMARCA5O60264 1052 aaPredicted RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 TXLNAP40222 546 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 SECISBP2LQ93073 1101 aaKnown RBP6.89□□□□□ -1.31
HERC4-206ENST00000427635 RUFY1Q96T51 708 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 SPG7Q9UQ90 795 aa6.89□□□□□ -1.31
HERC4-206ENST00000427635 NUTM2GQ5VZR2 741 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 ANKRD13AQ8IZ07 590 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 AK7Q96M32 723 aa6.88□□□□□ -1.31
HERC4-206ENST00000427635 CHMP5Q9NZZ3 219 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms