RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 CPS1P31327 1500 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 TECPR2O15040 1411 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 CCDC7Q96M83 1385 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 TMF1P82094 1093 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 KNDC1Q76NI1 1749 aa18.74■□□□□ 0.59
PRPF39-202ENST00000424478 SRPK2P78362 688 aaKnown RBP18.73■□□□□ 0.59
PRPF39-202ENST00000424478 TULP4Q9NRJ4 1543 aa18.73■□□□□ 0.59
PRPF39-202ENST00000424478 DLC1Q96QB1 1528 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 PIK3R4Q99570 1358 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 CDK19Q9BWU1 502 aa18.71■□□□□ 0.59
PRPF39-202ENST00000424478 TMC1Q8TDI8 760 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 PTCH1Q13635 1447 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 FAM135BQ49AJ0 1406 aa18.69■□□□□ 0.58
PRPF39-202ENST00000424478 TMEM94Q12767 1356 aa18.68■□□□□ 0.58
PRPF39-202ENST00000424478 NALCNQ8IZF0 1738 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 EVC2Q86UK5 1308 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 DMRT2Q9Y5R5 561 aa18.67■□□□□ 0.58
PRPF39-202ENST00000424478 NWD1Q149M9 1564 aa18.66■□□□□ 0.58
PRPF39-202ENST00000424478 SLC12A5Q9H2X9 1139 aa18.66■□□□□ 0.58
PRPF39-202ENST00000424478 WASLO00401 505 aaPredicted RBP18.66■□□□□ 0.58
PRPF39-202ENST00000424478 PRR36Q9H6K5 1346 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 SBNO2Q9Y2G9 1366 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 SIRT1Q96EB6 747 aa18.64■□□□□ 0.57
PRPF39-202ENST00000424478 DIEXFQ68CQ4 756 aaKnown RBP18.63■□□□□ 0.57
PRPF39-202ENST00000424478 RGPD8O14715 1765 aaPredicted RBP18.62■□□□□ 0.57
PRPF39-202ENST00000424478 XIRP1Q702N8 1843 aaKnown RBP18.62■□□□□ 0.57
PRPF39-202ENST00000424478 LRRC7Q96NW7 1537 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 PMFBP1Q8TBY8 1022 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 CABP1Q9NZU7 370 aa18.61■□□□□ 0.57
PRPF39-202ENST00000424478 NUDT16Q96DE0 195 aaKnown RBP18.61■□□□□ 0.57
PRPF39-202ENST00000424478 PANK3Q9H999 370 aa18.6■□□□□ 0.57
PRPF39-202ENST00000424478 NKTRP30414 1462 aaKnown RBP18.6■□□□□ 0.57
PRPF39-202ENST00000424478 MYOM1P52179 1685 aa18.6■□□□□ 0.57
PRPF39-202ENST00000424478 ADGRL3Q9HAR2 1447 aa18.59■□□□□ 0.57
PRPF39-202ENST00000424478 USP32Q8NFA0 1604 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 CDCA8Q53HL2 280 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 ORAI2Q96SN7 254 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 ATP7BP35670 1465 aa18.56■□□□□ 0.56
PRPF39-202ENST00000424478 C19orf44Q9H6X5 657 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 PPIP5K1Q6PFW1 1433 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 ADGRB2O60241 1585 aa18.55■□□□□ 0.56
PRPF39-202ENST00000424478 DDX17Q92841 729 aaKnown RBP18.54■□□□□ 0.56
PRPF39-202ENST00000424478 CARD14Q9BXL6 1004 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 XPCQ01831 940 aaPredicted RBP18.54■□□□□ 0.56
PRPF39-202ENST00000424478 ESCO1Q5FWF5 840 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 LTBP4Q8N2S1 1624 aa18.54■□□□□ 0.56
PRPF39-202ENST00000424478 ATF3P18847 181 aa18.53■□□□□ 0.56
PRPF39-202ENST00000424478 FMN2Q9NZ56 1722 aa18.52■□□□□ 0.56
PRPF39-202ENST00000424478 CCDC61Q9Y6R9 512 aa18.52■□□□□ 0.56
PRPF39-202ENST00000424478 MSH6P52701 1360 aa18.52■□□□□ 0.55
PRPF39-202ENST00000424478 PLEKHG5O94827 1062 aa18.52■□□□□ 0.55
PRPF39-202ENST00000424478 A0A1W2PP64 1363 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 CDC42BPGQ6DT37 1551 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 ATAD2Q6PL18 1390 aa18.51■□□□□ 0.55
PRPF39-202ENST00000424478 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
PRPF39-202ENST00000424478 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.552e-6■■■□□ 14.7
PRPF39-202ENST00000424478 CD163L1Q9NR16 1453 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 ACEP12821 1306 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 SLC24A1O60721 1099 aa18.49■□□□□ 0.55
PRPF39-202ENST00000424478 FOXO3O43524 673 aa18.48■□□□□ 0.55
PRPF39-202ENST00000424478 MIER1Q8N108 512 aa18.48■□□□□ 0.55
PRPF39-202ENST00000424478 NGDNQ8NEJ9 315 aaKnown RBP18.48■□□□□ 0.55
PRPF39-202ENST00000424478 PER1O15534 1290 aaPredicted RBP18.47■□□□□ 0.55
PRPF39-202ENST00000424478 NSD3Q9BZ95 1437 aa18.47■□□□□ 0.55
PRPF39-202ENST00000424478 MST1RQ04912 1400 aa18.46■□□□□ 0.55
PRPF39-202ENST00000424478 ZRANB1Q9UGI0 708 aa18.46■□□□□ 0.55
PRPF39-202ENST00000424478 C1orf167Q5SNV9 1468 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 CADPS2Q86UW7 1296 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 PHF8Q9UPP1 1060 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 TOPAZ1Q8N9V7 1692 aa18.45■□□□□ 0.54
PRPF39-202ENST00000424478 TNNT2P45379 298 aaPredicted RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 NUTM2GQ5VZR2 741 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 KNSTRNQ9Y448 316 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 SCAF1Q9H7N4 1312 aaKnown RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 KTN1Q86UP2 1357 aaKnown RBP18.44■□□□□ 0.54
PRPF39-202ENST00000424478 SLAIN2Q9P270 581 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 ANKRD36BQ8N2N9 1353 aa18.44■□□□□ 0.54
PRPF39-202ENST00000424478 PIP4K2BP78356 416 aa18.43■□□□□ 0.54
PRPF39-202ENST00000424478 HDGFL2Q7Z4V5 671 aaPredicted RBP18.43■□□□□ 0.54
PRPF39-202ENST00000424478 TERF2IPQ9NYB0 399 aa18.43■□□□□ 0.54
PRPF39-202ENST00000424478 GGNBP2Q9H3C7 697 aa18.42■□□□□ 0.54
PRPF39-202ENST00000424478 PAK3O75914 559 aaPredicted RBP18.42■□□□□ 0.54
PRPF39-202ENST00000424478 PUS7Q96PZ0 661 aaKnown RBP18.42■□□□□ 0.54
PRPF39-202ENST00000424478 FBLN1P23142 703 aa18.42■□□□□ 0.54
PRPF39-202ENST00000424478 NME9Q86XW9 330 aa18.41■□□□□ 0.54
PRPF39-202ENST00000424478 PLEKHG3A1L390 1219 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 ANKARQ7Z5J8 1434 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 ITSN1Q15811 1721 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 BRINP3Q76B58 766 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 SOX12O15370 315 aa18.4■□□□□ 0.54
PRPF39-202ENST00000424478 AMER1Q5JTC6 1135 aaPredicted RBP18.4■□□□□ 0.54
PRPF39-202ENST00000424478 CPSF1Q10570 1443 aaKnown RBP18.39■□□□□ 0.53
PRPF39-202ENST00000424478 NCOA3Q9Y6Q9 1424 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 LMOD2Q6P5Q4 547 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 PSME1Q06323 249 aa18.39■□□□□ 0.53
PRPF39-202ENST00000424478 DCCP43146 1447 aa18.38■□□□□ 0.53
PRPF39-202ENST00000424478 ANP32CO43423 234 aa18.38■□□□□ 0.53
PRPF39-202ENST00000424478 AKAP12Q02952 1782 aa18.37■□□□□ 0.53
PRPF39-202ENST00000424478 UBAP1LF5GYI3 381 aa18.37■□□□□ 0.53
PRPF39-202ENST00000424478 USP6P35125 1406 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms