RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PRAG1Q86YV5 1406 aa17.21■□□□□ 0.35
USP4-204ENST00000416417 ESCO1Q5FWF5 840 aa17.21■□□□□ 0.34
USP4-204ENST00000416417 IFT172Q9UG01 1749 aa17.2■□□□□ 0.34
USP4-204ENST00000416417 ANKRD30BQ9BXX2 1392 aa17.2■□□□□ 0.34
USP4-204ENST00000416417 SOS2Q07890 1332 aaPredicted RBP17.19■□□□□ 0.34
USP4-204ENST00000416417 LRPPRCP42704 1394 aaKnown RBP17.19■□□□□ 0.34
USP4-204ENST00000416417 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
USP4-204ENST00000416417 NGLY1Q96IV0 654 aa17.17■□□□□ 0.34
USP4-204ENST00000416417 QTRT2Q9H974 415 aaKnown RBP17.17■□□□□ 0.34
USP4-204ENST00000416417 LAMC1P11047 1609 aa17.17■□□□□ 0.34
USP4-204ENST00000416417 FOXO3O43524 673 aa17.16■□□□□ 0.34
USP4-204ENST00000416417 UPF1Q92900 1129 aaKnown RBP eCLIP17.16■□□□□ 0.34
USP4-204ENST00000416417 RAB3GAP2Q9H2M9 1393 aa17.16■□□□□ 0.34
USP4-204ENST00000416417 CDC42BPGQ6DT37 1551 aa17.16■□□□□ 0.34
USP4-204ENST00000416417 CFAP70Q5T0N1 1121 aa17.16■□□□□ 0.34
USP4-204ENST00000416417 ABCC11Q96J66 1382 aa17.15■□□□□ 0.34
USP4-204ENST00000416417 TECPR2O15040 1411 aa17.15■□□□□ 0.34
USP4-204ENST00000416417 YTHDC2Q9H6S0 1430 aaKnown RBP17.15■□□□□ 0.34
USP4-204ENST00000416417 SAFB2Q14151 953 aaKnown RBP eCLIP17.14■□□□□ 0.33
USP4-204ENST00000416417 NPHP3Q7Z494 1330 aa17.13■□□□□ 0.33
USP4-204ENST00000416417 RGS12O14924 1447 aa17.12■□□□□ 0.33
USP4-204ENST00000416417 C14orf93Q9H972 538 aaKnown RBP17.12■□□□□ 0.33
USP4-204ENST00000416417 PXDNQ92626 1479 aa17.12■□□□□ 0.33
USP4-204ENST00000416417 RBM6P78332 1123 aaKnown RBP17.11■□□□□ 0.33
USP4-204ENST00000416417 USP21Q9UK80 565 aa17.11■□□□□ 0.33
USP4-204ENST00000416417 KNDC1Q76NI1 1749 aa17.11■□□□□ 0.33
USP4-204ENST00000416417 CDK12Q9NYV4 1490 aaPredicted RBP17.1■□□□□ 0.33
USP4-204ENST00000416417 PLEKHG5O94827 1062 aa17.1■□□□□ 0.33
USP4-204ENST00000416417 NRXN1Q9ULB1 1477 aa17.08■□□□□ 0.33
USP4-204ENST00000416417 COL22A1Q8NFW1 1626 aaPredicted RBP17.08■□□□□ 0.33
USP4-204ENST00000416417 PRAM1Q96QH2 718 aa17.08■□□□□ 0.32
USP4-204ENST00000416417 KDM2AQ9Y2K7 1162 aa17.08■□□□□ 0.32
USP4-204ENST00000416417 MYOM2P54296 1465 aa17.08■□□□□ 0.32
USP4-204ENST00000416417 FMN2Q9NZ56 1722 aa17.07■□□□□ 0.32
USP4-204ENST00000416417 DHX57Q6P158 1386 aaKnown RBP17.07■□□□□ 0.32
USP4-204ENST00000416417 KRT28Q7Z3Y7 464 aa17.06■□□□□ 0.32
USP4-204ENST00000416417 FNBP4Q8N3X1 1017 aaPredicted RBP17.06■□□□□ 0.32
USP4-204ENST00000416417 TRPC5Q9UL62 973 aaPredicted RBP17.05■□□□□ 0.32
USP4-204ENST00000416417 SIRT1Q96EB6 747 aa17.04■□□□□ 0.32
USP4-204ENST00000416417 HIRIP3Q9BW71 556 aaPredicted RBP17.04■□□□□ 0.32
USP4-204ENST00000416417 POGKQ9P215 609 aa17.04■□□□□ 0.32
USP4-204ENST00000416417 TRAK1Q9UPV9 953 aa17.04■□□□□ 0.32
USP4-204ENST00000416417 RGPD8O14715 1765 aaPredicted RBP17.03■□□□□ 0.32
USP4-204ENST00000416417 SPATA31A3Q5VYP0 1347 aa17.03■□□□□ 0.32
USP4-204ENST00000416417 ACIN1Q9UKV3 1341 aaKnown RBP17.03■□□□□ 0.32
USP4-204ENST00000416417 DCAF11Q8TEB1 546 aa17.03■□□□□ 0.32
USP4-204ENST00000416417 PHF8Q9UPP1 1060 aa17.03■□□□□ 0.32
USP4-204ENST00000416417 ATRNO75882 1429 aa17.03■□□□□ 0.32
USP4-204ENST00000416417 CABLES1Q8TDN4 633 aa17.02■□□□□ 0.32
USP4-204ENST00000416417 BCL9LQ86UU0 1499 aa17.02■□□□□ 0.32
USP4-204ENST00000416417 PMFBP1Q8TBY8 1022 aa17.01■□□□□ 0.31
USP4-204ENST00000416417 LMOD2Q6P5Q4 547 aa17.01■□□□□ 0.31
USP4-204ENST00000416417 KIF1AQ12756 1690 aa17■□□□□ 0.31
USP4-204ENST00000416417 MINK1Q8N4C8 1332 aaPredicted RBP17■□□□□ 0.31
USP4-204ENST00000416417 ADGRB1O14514 1584 aa16.99■□□□□ 0.31
USP4-204ENST00000416417 MARF1Q9Y4F3 1742 aaKnown RBP16.98■□□□□ 0.31
USP4-204ENST00000416417 HAP1P54257 671 aaPredicted RBP16.97■□□□□ 0.31
USP4-204ENST00000416417 PSME1Q06323 249 aa16.97■□□□□ 0.31
USP4-204ENST00000416417 DLC1Q96QB1 1528 aa16.97■□□□□ 0.31
USP4-204ENST00000416417 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
USP4-204ENST00000416417 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
USP4-204ENST00000416417 GJD4Q96KN9 370 aaPredicted RBP16.96■□□□□ 0.3
USP4-204ENST00000416417 PRR36Q9H6K5 1346 aa16.95■□□□□ 0.3
USP4-204ENST00000416417 ATAD2Q6PL18 1390 aa16.95■□□□□ 0.3
USP4-204ENST00000416417 UNC5CLQ8IV45 518 aa16.94■□□□□ 0.3
USP4-204ENST00000416417 SLIT2O94813 1529 aa16.94■□□□□ 0.3
USP4-204ENST00000416417 SBNO1A3KN83 1393 aa16.92■□□□□ 0.3
USP4-204ENST00000416417 ADGRB2O60241 1585 aa16.92■□□□□ 0.3
USP4-204ENST00000416417 RALGAPBQ86X10 1494 aa16.92■□□□□ 0.3
USP4-204ENST00000416417 GLI3P10071 1580 aa16.91■□□□□ 0.3
USP4-204ENST00000416417 ANKARQ7Z5J8 1434 aa16.91■□□□□ 0.3
USP4-204ENST00000416417 WASLO00401 505 aaPredicted RBP16.91■□□□□ 0.3
USP4-204ENST00000416417 HRCP23327 699 aa16.91■□□□□ 0.3
USP4-204ENST00000416417 CCDC9Q9Y3X0 531 aaKnown RBP16.9■□□□□ 0.3
USP4-204ENST00000416417 ABCA3Q99758 1704 aa16.89■□□□□ 0.29
USP4-204ENST00000416417 FAM83GA6ND36 823 aa16.89■□□□□ 0.29
USP4-204ENST00000416417 ARHGEF10O15013 1369 aa16.89■□□□□ 0.29
USP4-204ENST00000416417 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.88■□□□□ 0.29
USP4-204ENST00000416417 TULP4Q9NRJ4 1543 aa16.88■□□□□ 0.29
USP4-204ENST00000416417 PAK3O75914 559 aaPredicted RBP16.87■□□□□ 0.29
USP4-204ENST00000416417 NGDNQ8NEJ9 315 aaKnown RBP16.87■□□□□ 0.29
USP4-204ENST00000416417 TRPM3Q9HCF6 1732 aaPredicted RBP16.87■□□□□ 0.29
USP4-204ENST00000416417 EP400Q96L91 3159 aa16.87■□□□□ 0.29
USP4-204ENST00000416417 PLCH1Q4KWH8 1693 aa16.86■□□□□ 0.29
USP4-204ENST00000416417 GPRASP1Q5JY77 1395 aa16.86■□□□□ 0.29
USP4-204ENST00000416417 ARHGEF28Q8N1W1 1705 aaKnown RBP16.86■□□□□ 0.29
USP4-204ENST00000416417 NBPF1Q3BBV0 1214 aa16.86■□□□□ 0.29
USP4-204ENST00000416417 SEPT12Q8IYM1 358 aa16.86■□□□□ 0.29
USP4-204ENST00000416417 VPS72Q15906 364 aa16.85■□□□□ 0.29
USP4-204ENST00000416417 NUDT16Q96DE0 195 aaKnown RBP16.85■□□□□ 0.29
USP4-204ENST00000416417 EIF3AQ14152 1382 aaKnown RBP16.84■□□□□ 0.29
USP4-204ENST00000416417 STAC3Q96MF2 364 aa16.84■□□□□ 0.29
USP4-204ENST00000416417 CDK19Q9BWU1 502 aa16.84■□□□□ 0.29
USP4-204ENST00000416417 ALS2Q96Q42 1657 aa16.83■□□□□ 0.29
USP4-204ENST00000416417 NUTM2GQ5VZR2 741 aa16.83■□□□□ 0.28
USP4-204ENST00000416417 BTG4Q9NY30 223 aa16.83■□□□□ 0.28
USP4-204ENST00000416417 BRWD3Q6RI45 1802 aa16.83■□□□□ 0.28
USP4-204ENST00000416417 ATP7BP35670 1465 aa16.82■□□□□ 0.28
USP4-204ENST00000416417 A0A0G2JS52 829 aa16.82■□□□□ 0.28
USP4-204ENST00000416417 MYT1Q01538 1121 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms