RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CAMSAP1Q5T5Y3 1602 aa12.88□□□□□ -0.35
SS18-203ENST00000415083 FAM161AQ3B820 660 aa12.88□□□□□ -0.35
SS18-203ENST00000415083 PANK1Q8TE04 598 aa12.88□□□□□ -0.35
SS18-203ENST00000415083 RLBP1P12271 317 aa12.88□□□□□ -0.35
SS18-203ENST00000415083 IL27Q8NEV9 243 aa12.88□□□□□ -0.35
SS18-203ENST00000415083 E9PSI1 815 aa12.87□□□□□ -0.35
SS18-203ENST00000415083 RTN4Q9NQC3 1192 aaKnown RBP12.87□□□□□ -0.35
SS18-203ENST00000415083 RRP7AQ9Y3A4 280 aaKnown RBP12.87□□□□□ -0.35
SS18-203ENST00000415083 RGS3P49796 1198 aa12.87□□□□□ -0.35
SS18-203ENST00000415083 C14orf93Q9H972 538 aaKnown RBP12.87□□□□□ -0.35
SS18-203ENST00000415083 TRAK1Q9UPV9 953 aa12.87□□□□□ -0.35
SS18-203ENST00000415083 MYO5BQ9ULV0 1848 aa12.87□□□□□ -0.35
SS18-203ENST00000415083 ABCC3O15438 1527 aa12.86□□□□□ -0.35
SS18-203ENST00000415083 NEXMIFQ5QGS0 1516 aa12.86□□□□□ -0.35
SS18-203ENST00000415083 CENPJQ9HC77 1338 aaPredicted RBP12.86□□□□□ -0.35
SS18-203ENST00000415083 ADGRB2O60241 1585 aa12.86□□□□□ -0.35
SS18-203ENST00000415083 TNNT2P45379 298 aaPredicted RBP12.85□□□□□ -0.35
SS18-203ENST00000415083 POGZQ7Z3K3 1410 aa12.84□□□□□ -0.35
SS18-203ENST00000415083 NFKBIBQ15653 356 aa12.84□□□□□ -0.35
SS18-203ENST00000415083 COG6Q9Y2V7 657 aa12.84□□□□□ -0.35
SS18-203ENST00000415083 PCDHB15Q9Y5E8 787 aa12.84□□□□□ -0.35
SS18-203ENST00000415083 RARSP54136 660 aaKnown RBP12.83□□□□□ -0.36
SS18-203ENST00000415083 USP35Q9P2H5 1018 aa12.82□□□□□ -0.36
SS18-203ENST00000415083 NUTM2DQ5VT03 806 aaPredicted RBP12.82□□□□□ -0.36
SS18-203ENST00000415083 TCP11L2Q8N4U5 519 aa12.82□□□□□ -0.36
SS18-203ENST00000415083 MLH3Q9UHC1 1453 aa12.82□□□□□ -0.36
SS18-203ENST00000415083 COL3A1P02461 1466 aaPredicted RBP12.82□□□□□ -0.36
SS18-203ENST00000415083 NEUROD2Q15784 382 aa12.81□□□□□ -0.36
SS18-203ENST00000415083 CD109Q6YHK3 1445 aa12.81□□□□□ -0.36
SS18-203ENST00000415083 PDE3AQ14432 1141 aa12.81□□□□□ -0.36
SS18-203ENST00000415083 MTHFSP49914 203 aa12.81□□□□□ -0.36
SS18-203ENST00000415083 ANO8Q9HCE9 1232 aaPredicted RBP12.81□□□□□ -0.36
SS18-203ENST00000415083 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.8□□□□□ -0.36
SS18-203ENST00000415083 CLUAP1Q96AJ1 413 aa12.8□□□□□ -0.36
SS18-203ENST00000415083 CD163L1Q9NR16 1453 aa12.8□□□□□ -0.36
SS18-203ENST00000415083 DDRGK1Q96HY6 314 aa12.8□□□□□ -0.36
SS18-203ENST00000415083 BCL2L13Q9BXK5 485 aa12.79□□□□□ -0.36
SS18-203ENST00000415083 MORC1Q86VD1 984 aa12.79□□□□□ -0.36
SS18-203ENST00000415083 RUNDC1Q96C34 613 aa12.79□□□□□ -0.36
SS18-203ENST00000415083 PPM1GO15355 546 aaPredicted RBP12.79□□□□□ -0.36
SS18-203ENST00000415083 CHGAP10645 457 aaKnown RBP12.79□□□□□ -0.36
SS18-203ENST00000415083 DIP2CQ9Y2E4 1556 aa12.79□□□□□ -0.36
SS18-203ENST00000415083 FRAT2O75474 233 aaPredicted RBP12.78□□□□□ -0.36
SS18-203ENST00000415083 GGT6Q6P531 493 aa12.78□□□□□ -0.36
SS18-203ENST00000415083 ANKRD26Q9UPS8 1709 aa12.78□□□□□ -0.36
SS18-203ENST00000415083 PLEKHF1Q96S99 279 aa12.77□□□□□ -0.37
SS18-203ENST00000415083 CGNL1Q0VF96 1302 aa12.77□□□□□ -0.37
SS18-203ENST00000415083 RICTORQ6R327 1708 aa12.76□□□□□ -0.37
SS18-203ENST00000415083 FRAT1Q92837 279 aaPredicted RBP12.76□□□□□ -0.37
SS18-203ENST00000415083 CABP2Q9NPB3 220 aa12.76□□□□□ -0.37
SS18-203ENST00000415083 PTPRMP28827 1452 aa12.76□□□□□ -0.37
SS18-203ENST00000415083 ANKRD36BQ8N2N9 1353 aa12.76□□□□□ -0.37
SS18-203ENST00000415083 TMEM131LA2VDJ0 1609 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 CLTCQ00610 1675 aaKnown RBP12.75□□□□□ -0.37
SS18-203ENST00000415083 A0A1W2PP64 1363 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 CCDC27Q2M243 656 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 NGEFQ8N5V2 710 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 CFAP74Q9C0B2 1584 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 BRPF3Q9ULD4 1205 aa12.75□□□□□ -0.37
SS18-203ENST00000415083 NINLQ9Y2I6 1382 aa12.74□□□□□ -0.37
SS18-203ENST00000415083 WDR63Q8IWG1 891 aa12.74□□□□□ -0.37
SS18-203ENST00000415083 SENP3Q9H4L4 574 aaPredicted RBP12.74□□□□□ -0.37
SS18-203ENST00000415083 RAPGEF3O95398 923 aa12.74□□□□□ -0.37
SS18-203ENST00000415083 TRIM35Q9UPQ4 493 aa12.74□□□□□ -0.37
SS18-203ENST00000415083 GSE1Q14687 1217 aa12.73□□□□□ -0.37
SS18-203ENST00000415083 TSR2Q969E8 191 aaKnown RBP12.73□□□□□ -0.37
SS18-203ENST00000415083 SLC24A1O60721 1099 aa12.73□□□□□ -0.37
SS18-203ENST00000415083 PREX1Q8TCU6 1659 aa12.73□□□□□ -0.37
SS18-203ENST00000415083 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
SS18-203ENST00000415083 ABCC11Q96J66 1382 aa12.72□□□□□ -0.37
SS18-203ENST00000415083 ANTXR1Q9H6X2 564 aa12.72□□□□□ -0.37
SS18-203ENST00000415083 RPGRIP1LQ68CZ1 1315 aa12.72□□□□□ -0.37
SS18-203ENST00000415083 IDI1Q13907 227 aa12.72□□□□□ -0.37
SS18-203ENST00000415083 SAFB2Q14151 953 aaKnown RBP eCLIP12.71□□□□□ -0.37
SS18-203ENST00000415083 YEATS2Q9ULM3 1422 aa12.71□□□□□ -0.38
SS18-203ENST00000415083 KIF20BQ96Q89 1820 aa12.69□□□□□ -0.38
SS18-203ENST00000415083 PUS7Q96PZ0 661 aaKnown RBP12.69□□□□□ -0.38
SS18-203ENST00000415083 GGNBP2Q9H3C7 697 aa12.69□□□□□ -0.38
SS18-203ENST00000415083 ARHGAP31Q2M1Z3 1444 aa12.69□□□□□ -0.38
SS18-203ENST00000415083 SETD1AO15047 1707 aaKnown RBP12.69□□□□□ -0.38
SS18-203ENST00000415083 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.69□□□□□ -0.38
SS18-203ENST00000415083 ZFYVE9O95405 1425 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 EVC2Q86UK5 1308 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 FYB1O15117 783 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 FBLN1P23142 703 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 MVPQ14764 893 aaKnown RBP12.68□□□□□ -0.38
SS18-203ENST00000415083 NSD2O96028 1365 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 MAPK8IP3Q9UPT6 1336 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 U2AF1L5P0DN76 240 aaPredicted RBP12.68□□□□□ -0.38
SS18-203ENST00000415083 U2AF1Q01081 240 aaKnown RBP eCLIP12.68□□□□□ -0.382e-6■■■■□ 21.7
SS18-203ENST00000415083 MED14O60244 1454 aa12.68□□□□□ -0.38
SS18-203ENST00000415083 TBC1D32Q96NH3 1257 aa12.67□□□□□ -0.38
SS18-203ENST00000415083 TRIM27P14373 513 aa12.67□□□□□ -0.38
SS18-203ENST00000415083 EXOSC9Q06265 439 aaKnown RBP12.67□□□□□ -0.38
SS18-203ENST00000415083 NCBP3Q53F19 620 aaKnown RBP12.67□□□□□ -0.38
SS18-203ENST00000415083 CANXP27824 592 aaKnown RBP12.66□□□□□ -0.38
SS18-203ENST00000415083 TMPOP42166 694 aaKnown RBP12.66□□□□□ -0.38
SS18-203ENST00000415083 SSH1Q8WYL5 1049 aa12.66□□□□□ -0.38
SS18-203ENST00000415083 ARHGEF40Q8TER5 1519 aa12.66□□□□□ -0.38
SS18-203ENST00000415083 PNPLA6Q8IY17 1366 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms