RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 NGEFQ8N5V2 710 aa11.57□□□□□ -0.56
LIG4-202ENST00000405925 PNISRQ8TF01 805 aaKnown RBP11.57□□□□□ -0.56
LIG4-202ENST00000405925 RALGAPBQ86X10 1494 aa11.56□□□□□ -0.56
LIG4-202ENST00000405925 CLASP1Q7Z460 1538 aa11.56□□□□□ -0.56
LIG4-202ENST00000405925 NME9Q86XW9 330 aa11.55□□□□□ -0.56
LIG4-202ENST00000405925 PHF8Q9UPP1 1060 aa11.55□□□□□ -0.56
LIG4-202ENST00000405925 ABCC1P33527 1531 aa11.55□□□□□ -0.56
LIG4-202ENST00000405925 SULT6B1Q6IMI4 303 aa11.55□□□□□ -0.56
LIG4-202ENST00000405925 ZFYVE16Q7Z3T8 1539 aa11.55□□□□□ -0.56
LIG4-202ENST00000405925 CFAP65Q6ZU64 1925 aaKnown RBP11.55□□□□□ -0.56
LIG4-202ENST00000405925 MAST1Q9Y2H9 1570 aa11.54□□□□□ -0.56
LIG4-202ENST00000405925 ZC3H6P61129 1189 aaKnown RBP11.54□□□□□ -0.56
LIG4-202ENST00000405925 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
LIG4-202ENST00000405925 CDCA7LQ96GN5 454 aa11.54□□□□□ -0.56
LIG4-202ENST00000405925 EIF2S2P20042 333 aaKnown RBP11.54□□□□□ -0.56
LIG4-202ENST00000405925 SYTL4Q96C24 671 aaPredicted RBP11.54□□□□□ -0.56
LIG4-202ENST00000405925 ARHGEF12Q9NZN5 1544 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 PIP4K2BP78356 416 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 STRN4Q9NRL3 753 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 NPATQ14207 1427 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 ERICH6BQ5W0A0 696 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 PRDM11Q9NQV5 511 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 PREX2Q70Z35 1606 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 TSPOAP1O95153 1857 aa11.53□□□□□ -0.56
LIG4-202ENST00000405925 MEX3CQ5U5Q3 659 aaKnown RBP11.52□□□□□ -0.56
LIG4-202ENST00000405925 TTC5Q8N0Z6 440 aa11.52□□□□□ -0.56
LIG4-202ENST00000405925 TSPYL4Q9UJ04 414 aa11.52□□□□□ -0.57
LIG4-202ENST00000405925 RRP1P56182 461 aaKnown RBP11.52□□□□□ -0.57
LIG4-202ENST00000405925 TESK2Q96S53 571 aa11.52□□□□□ -0.57
LIG4-202ENST00000405925 GNAI1P63096 354 aa11.51□□□□□ -0.57
LIG4-202ENST00000405925 MLH3Q9UHC1 1453 aa11.51□□□□□ -0.57
LIG4-202ENST00000405925 ZKSCAN2Q63HK3 967 aa11.51□□□□□ -0.57
LIG4-202ENST00000405925 RWDD1Q9H446 243 aaPredicted RBP11.51□□□□□ -0.57
LIG4-202ENST00000405925 COG6Q9Y2V7 657 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 NUTM2BA6NNL0 878 aaPredicted RBP11.5□□□□□ -0.57
LIG4-202ENST00000405925 NUTM2EB1AL46 878 aaPredicted RBP11.5□□□□□ -0.57
LIG4-202ENST00000405925 NUTM2AQ8IVF1 878 aaPredicted RBP11.5□□□□□ -0.57
LIG4-202ENST00000405925 CFAP74Q9C0B2 1584 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 CASC1Q6TDU7 716 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 DNAJC5Q9H3Z4 198 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 KCNA6P17658 529 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 GAS2L2Q8NHY3 880 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 EMILIN1Q9Y6C2 1016 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 ACEP12821 1306 aa11.5□□□□□ -0.57
LIG4-202ENST00000405925 KDM6BO15054 1643 aa11.49□□□□□ -0.57
LIG4-202ENST00000405925 NCKAP5LQ9HCH0 1330 aa11.49□□□□□ -0.57
LIG4-202ENST00000405925 EXOC6Q8TAG9 804 aa11.49□□□□□ -0.57
LIG4-202ENST00000405925 CADPS2Q86UW7 1296 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 CHMP3Q9Y3E7 222 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 GCC2Q8IWJ2 1684 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 ADGBQ8N7X0 1667 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 TOM1L2Q6ZVM7 507 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 DMRT2Q9Y5R5 561 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 ADCY10Q96PN6 1610 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 CRBNQ96SW2 442 aa11.48□□□□□ -0.57
LIG4-202ENST00000405925 PLEKHO1Q53GL0 409 aaPredicted RBP11.47□□□□□ -0.57
LIG4-202ENST00000405925 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
LIG4-202ENST00000405925 SMG6Q86US8 1419 aaKnown RBP11.47□□□□□ -0.57
LIG4-202ENST00000405925 FBLN1P23142 703 aa11.47□□□□□ -0.57
LIG4-202ENST00000405925 KCNH5Q8NCM2 988 aa11.47□□□□□ -0.57
LIG4-202ENST00000405925 TSR2Q969E8 191 aaKnown RBP11.46□□□□□ -0.57
LIG4-202ENST00000405925 CDC42BPAQ5VT25 1732 aa11.46□□□□□ -0.57
LIG4-202ENST00000405925 TATP17735 454 aaPredicted RBP11.46□□□□□ -0.57
LIG4-202ENST00000405925 MAGI2Q86UL8 1455 aa11.46□□□□□ -0.57
LIG4-202ENST00000405925 FKBP5Q13451 457 aaPredicted RBP11.46□□□□□ -0.58
LIG4-202ENST00000405925 ZNF530Q6P9A1 599 aaPredicted RBP11.46□□□□□ -0.58
LIG4-202ENST00000405925 HMMRO75330 724 aa11.45□□□□□ -0.58
LIG4-202ENST00000405925 YTHDC2Q9H6S0 1430 aaKnown RBP11.45□□□□□ -0.58
LIG4-202ENST00000405925 KRT28Q7Z3Y7 464 aa11.45□□□□□ -0.58
LIG4-202ENST00000405925 EXOSC9Q06265 439 aaKnown RBP11.45□□□□□ -0.58
LIG4-202ENST00000405925 HDAC5Q9UQL6 1122 aa11.45□□□□□ -0.58
LIG4-202ENST00000405925 FCHSD2O94868 740 aa11.45□□□□□ -0.58
LIG4-202ENST00000405925 LTKP29376 864 aa11.44□□□□□ -0.58
LIG4-202ENST00000405925 DZIP1LQ8IYY4 767 aaKnown RBP11.44□□□□□ -0.58
LIG4-202ENST00000405925 UHRF1BP1Q6BDS2 1440 aa11.44□□□□□ -0.58
LIG4-202ENST00000405925 BECN1Q14457 450 aa11.44□□□□□ -0.58
LIG4-202ENST00000405925 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
LIG4-202ENST00000405925 NINLQ9Y2I6 1382 aa11.44□□□□□ -0.58
LIG4-202ENST00000405925 FYB1O15117 783 aa11.44□□□□□ -0.58
LIG4-202ENST00000405925 API5Q9BZZ5 524 aaKnown RBP11.44□□□□□ -0.58
LIG4-202ENST00000405925 TMEM2Q9UHN6 1383 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 HECW2Q9P2P5 1572 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 GTF2E1P29083 439 aaPredicted RBP11.43□□□□□ -0.58
LIG4-202ENST00000405925 TAF7LQ5H9L4 462 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 EIF2AK4Q9P2K8 1649 aaKnown RBP11.43□□□□□ -0.58
LIG4-202ENST00000405925 KCNJ4P48050 445 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 DDX54Q8TDD1 881 aaKnown RBP11.43□□□□□ -0.58
LIG4-202ENST00000405925 ANKRD36BQ8N2N9 1353 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 KIF16BQ96L93 1317 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 MSH6P52701 1360 aa11.43□□□□□ -0.58
LIG4-202ENST00000405925 ARAP3Q8WWN8 1544 aa11.42□□□□□ -0.58
LIG4-202ENST00000405925 TMPOP42166 694 aaKnown RBP11.42□□□□□ -0.58
LIG4-202ENST00000405925 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
LIG4-202ENST00000405925 PPIP5K1Q6PFW1 1433 aa11.42□□□□□ -0.58
LIG4-202ENST00000405925 NEXNQ0ZGT2 675 aa11.42□□□□□ -0.58
LIG4-202ENST00000405925 USHBP1Q8N6Y0 703 aa11.42□□□□□ -0.58
LIG4-202ENST00000405925 TTC21BQ7Z4L5 1316 aa11.42□□□□□ -0.58
LIG4-202ENST00000405925 LRPPRCP42704 1394 aaKnown RBP11.42□□□□□ -0.58
LIG4-202ENST00000405925 PANK1Q8TE04 598 aa11.41□□□□□ -0.58
LIG4-202ENST00000405925 DDRGK1Q96HY6 314 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms