RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 C14orf93Q9H972 538 aaKnown RBP13.35□□□□□ -0.27
CALD1-203ENST00000393118 APBB1O00213 710 aa13.34□□□□□ -0.27
CALD1-203ENST00000393118 SLC52A1Q9NWF4 448 aa13.34□□□□□ -0.27
CALD1-203ENST00000393118 MFAP1P55081 439 aaKnown RBP13.34□□□□□ -0.27
CALD1-203ENST00000393118 ADCY10Q96PN6 1610 aa13.34□□□□□ -0.27
CALD1-203ENST00000393118 SPINK5Q9NQ38 1064 aaPredicted RBP13.33□□□□□ -0.27
CALD1-203ENST00000393118 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
CALD1-203ENST00000393118 EXOSC9Q06265 439 aaKnown RBP13.33□□□□□ -0.28
CALD1-203ENST00000393118 CDK19Q9BWU1 502 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 MAST1Q9Y2H9 1570 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 CHD1O14646 1710 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 USP35Q9P2H5 1018 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 RNF123Q5XPI4 1314 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 RPGRIP1LQ68CZ1 1315 aa13.33□□□□□ -0.28
CALD1-203ENST00000393118 PREX2Q70Z35 1606 aa13.32□□□□□ -0.28
CALD1-203ENST00000393118 WAPLQ7Z5K2 1190 aa13.31□□□□□ -0.28
CALD1-203ENST00000393118 ARID3AQ99856 593 aa13.31□□□□□ -0.28
CALD1-203ENST00000393118 CFAP65Q6ZU64 1925 aaKnown RBP13.31□□□□□ -0.28
CALD1-203ENST00000393118 TXNDC2Q86VQ3 553 aa13.31□□□□□ -0.28
CALD1-203ENST00000393118 RTEL1-TNFRSF6BF6WH68 1400 aa13.31□□□□□ -0.28
CALD1-203ENST00000393118 ASXL1Q8IXJ9 1541 aa13.31□□□□□ -0.28
CALD1-203ENST00000393118 LMOD2Q6P5Q4 547 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 COG3Q96JB2 828 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 EIF2AK4Q9P2K8 1649 aaKnown RBP13.3□□□□□ -0.28
CALD1-203ENST00000393118 MYO5CQ9NQX4 1742 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 FBLN1P23142 703 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 PDE3AQ14432 1141 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 KDM5DQ9BY66 1539 aa13.3□□□□□ -0.28
CALD1-203ENST00000393118 PRKAR2BP31323 418 aa13.29□□□□□ -0.28
CALD1-203ENST00000393118 DMRT2Q9Y5R5 561 aa13.29□□□□□ -0.28
CALD1-203ENST00000393118 MAGI2Q86UL8 1455 aa13.28□□□□□ -0.28
CALD1-203ENST00000393118 TRHP20396 242 aaPredicted RBP13.28□□□□□ -0.28
CALD1-203ENST00000393118 TRIM44Q96DX7 344 aaPredicted RBP13.28□□□□□ -0.28
CALD1-203ENST00000393118 ATP10AO60312 1499 aa13.28□□□□□ -0.28
CALD1-203ENST00000393118 CROCC2H7BZ55 1655 aa13.28□□□□□ -0.28
CALD1-203ENST00000393118 ATP7AQ04656 1500 aa13.28□□□□□ -0.28
CALD1-203ENST00000393118 CALD1Q05682 793 aaKnown RBP13.27□□□□□ -0.28
CALD1-203ENST00000393118 NKTRP30414 1462 aaKnown RBP13.27□□□□□ -0.28
CALD1-203ENST00000393118 ZNF518AQ6AHZ1 1483 aa13.27□□□□□ -0.29
CALD1-203ENST00000393118 RARSP54136 660 aaKnown RBP13.27□□□□□ -0.29
CALD1-203ENST00000393118 NGDNQ8NEJ9 315 aaKnown RBP13.27□□□□□ -0.29
CALD1-203ENST00000393118 CDC42BPBQ9Y5S2 1711 aa13.26□□□□□ -0.29
CALD1-203ENST00000393118 WDR63Q8IWG1 891 aa13.26□□□□□ -0.29
CALD1-203ENST00000393118 UGGT1Q9NYU2 1555 aa13.26□□□□□ -0.29
CALD1-203ENST00000393118 RTF1Q92541 710 aaKnown RBP13.26□□□□□ -0.29
CALD1-203ENST00000393118 ZMYND15Q9H091 742 aa13.26□□□□□ -0.29
CALD1-203ENST00000393118 PDZRN3Q9UPQ7 1066 aa13.26□□□□□ -0.29
CALD1-203ENST00000393118 DDX19BQ9UMR2 479 aa13.25□□□□□ -0.29
CALD1-203ENST00000393118 LTV1Q96GA3 475 aaPredicted RBP13.25□□□□□ -0.29
CALD1-203ENST00000393118 THUMPD2Q9BTF0 503 aaKnown RBP13.25□□□□□ -0.29
CALD1-203ENST00000393118 CHMP4BQ9H444 224 aaKnown RBP13.25□□□□□ -0.29
CALD1-203ENST00000393118 TMPOP42166 694 aaKnown RBP13.25□□□□□ -0.29
CALD1-203ENST00000393118 ANKRD45Q5TZF3 282 aa13.25□□□□□ -0.29
CALD1-203ENST00000393118 LNPKQ9C0E8 428 aa13.25□□□□□ -0.29
CALD1-203ENST00000393118 IGHDP01880 384 aa13.24□□□□□ -0.29
CALD1-203ENST00000393118 TNNQ9UQP3 1299 aa13.24□□□□□ -0.29
CALD1-203ENST00000393118 HSCBQ8IWL3 235 aa13.24□□□□□ -0.29
CALD1-203ENST00000393118 NOB1Q9ULX3 412 aaKnown RBP13.24□□□□□ -0.29
CALD1-203ENST00000393118 HSP90AB1P08238 724 aaKnown RBP13.24□□□□□ -0.29
CALD1-203ENST00000393118 ABCC1P33527 1531 aa13.24□□□□□ -0.29
CALD1-203ENST00000393118 RRS1Q15050 365 aaKnown RBP13.23□□□□□ -0.29
CALD1-203ENST00000393118 SLC4A10Q6U841 1118 aa13.23□□□□□ -0.29
CALD1-203ENST00000393118 EID1Q9Y6B2 187 aa13.23□□□□□ -0.29
CALD1-203ENST00000393118 ZCCHC11Q5TAX3 1644 aaKnown RBP13.23□□□□□ -0.29
CALD1-203ENST00000393118 ANP32BQ92688 251 aaKnown RBP13.22□□□□□ -0.29
CALD1-203ENST00000393118 GZF1Q9H116 711 aaPredicted RBP13.22□□□□□ -0.29
CALD1-203ENST00000393118 PIK3C2GO75747 1445 aa13.22□□□□□ -0.29
CALD1-203ENST00000393118 AMPHP49418 695 aa13.22□□□□□ -0.29
CALD1-203ENST00000393118 NFKBIBQ15653 356 aa13.22□□□□□ -0.29
CALD1-203ENST00000393118 C1orf115Q9H7X2 142 aa13.22□□□□□ -0.29
CALD1-203ENST00000393118 ATAD2Q6PL18 1390 aa13.21□□□□□ -0.29
CALD1-203ENST00000393118 LMOD3Q0VAK6 560 aa13.21□□□□□ -0.29
CALD1-203ENST00000393118 BLMP54132 1417 aaPredicted RBP13.21□□□□□ -0.29
CALD1-203ENST00000393118 SSH1Q8WYL5 1049 aa13.21□□□□□ -0.3
CALD1-203ENST00000393118 MVPQ14764 893 aaKnown RBP13.2□□□□□ -0.3
CALD1-203ENST00000393118 FOXD4L1Q9NU39 408 aa13.2□□□□□ -0.3
CALD1-203ENST00000393118 SLC26A8Q96RN1 970 aa13.2□□□□□ -0.3
CALD1-203ENST00000393118 KIF16BQ96L93 1317 aa13.2□□□□□ -0.3
CALD1-203ENST00000393118 FYB1O15117 783 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 EMILIN1Q9Y6C2 1016 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 NUTM2GQ5VZR2 741 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 ATF7IPQ6VMQ6 1270 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 NME9Q86XW9 330 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.19□□□□□ -0.3
CALD1-203ENST00000393118 PRDM15P57071 1507 aaPredicted RBP13.19□□□□□ -0.3
CALD1-203ENST00000393118 UHRF1BP1LA0JNW5 1464 aa13.19□□□□□ -0.3
CALD1-203ENST00000393118 NPATQ14207 1427 aa13.18□□□□□ -0.3
CALD1-203ENST00000393118 L1TD1Q5T7N2 865 aaKnown RBP13.18□□□□□ -0.3
CALD1-203ENST00000393118 GNAI1P63096 354 aa13.18□□□□□ -0.3
CALD1-203ENST00000393118 TRPM1Q7Z4N2 1603 aa13.18□□□□□ -0.3
CALD1-203ENST00000393118 POLR3AO14802 1390 aaPredicted RBP13.18□□□□□ -0.3
CALD1-203ENST00000393118 RLBP1P12271 317 aa13.18□□□□□ -0.3
CALD1-203ENST00000393118 NECTIN2Q92692 538 aa13.18□□□□□ -0.3
CALD1-203ENST00000393118 ZMYM4Q5VZL5 1548 aa13.17□□□□□ -0.3
CALD1-203ENST00000393118 TMEM57Q8N5G2 664 aa13.17□□□□□ -0.3
CALD1-203ENST00000393118 PCDHB15Q9Y5E8 787 aa13.17□□□□□ -0.3
CALD1-203ENST00000393118 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
CALD1-203ENST00000393118 IQGAP3Q86VI3 1631 aa13.17□□□□□ -0.3
CALD1-203ENST00000393118 FRAT2O75474 233 aaPredicted RBP13.16□□□□□ -0.3
CALD1-203ENST00000393118 DCTN1Q14203 1278 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms