RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IFT57Q9NWB7 429 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 CECR2Q9BXF3 1484 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 EXOC6Q8TAG9 804 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 SLC4A3P48751 1232 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 OFD1O75665 1012 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 PSMA5P28066 241 aa15.43■□□□□ 0.06
CCDC88C-204ENST00000389857 ERCC4Q92889 916 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-204ENST00000389857 WWC2Q6AWC2 1192 aa15.42■□□□□ 0.06
CCDC88C-204ENST00000389857 CAGE1Q8TC20 777 aa15.42■□□□□ 0.06
CCDC88C-204ENST00000389857 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.42■□□□□ 0.06
CCDC88C-204ENST00000389857 ZFYVE27Q5T4F4 411 aa15.42■□□□□ 0.06
CCDC88C-204ENST00000389857 RUNDC1Q96C34 613 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 AAMPQ13685 434 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 TSPYL4Q9UJ04 414 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 MIA2Q96PC5 1412 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 GNAI1P63096 354 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 RIC3Q7Z5B4 369 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 CCDC27Q2M243 656 aa15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 LETM1O95202 739 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-204ENST00000389857 FOSBP53539 338 aa15.4■□□□□ 0.06
CCDC88C-204ENST00000389857 WASHC4Q2M389 1173 aa15.4■□□□□ 0.06
CCDC88C-204ENST00000389857 SART3Q15020 963 aaKnown RBP15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 SAMD1Q6SPF0 538 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 CCDC39Q9UFE4 941 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 APAF1O14727 1248 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 CNTROBQ8N137 903 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 CCDC191Q8NCU4 936 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 MAP7D2Q96T17 732 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 PRDM2Q13029 1718 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 PDILTQ8N807 584 aa15.39■□□□□ 0.05
CCDC88C-204ENST00000389857 FYB1O15117 783 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 RAPGEF4Q8WZA2 1011 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 NEUROD6Q96NK8 337 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 FAM13BQ9NYF5 915 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 CWC15Q9P013 229 aaKnown RBP15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 CCP110O43303 1012 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 SMARCE1Q969G3 411 aa15.38■□□□□ 0.05
CCDC88C-204ENST00000389857 SLC3A2P08195 630 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-204ENST00000389857 TOP2AP11388 1531 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-204ENST00000389857 FAM43AQ8N2R8 423 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 KIF7Q2M1P5 1343 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 IKQ13123 557 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 VSIG10Q8N0Z9 540 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 PRKRIP1Q9H875 184 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 MAGEC2Q9UBF1 373 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 TMEM132AQ24JP5 1023 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 TBC1D2BQ9UPU7 963 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 PHF23Q9BUL5 403 aaPredicted RBP15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 CDK5RAP3Q96JB5 506 aa15.36■□□□□ 0.05
CCDC88C-204ENST00000389857 CDC45O75419 566 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 UBTFL1P0CB47 393 aaPredicted RBP15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 TXLNAP40222 546 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 ATF3P18847 181 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 SYCP1Q15431 976 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 FILIP1LQ4L180 1135 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 C22orf23Q9BZE7 217 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 HIP1O00291 1037 aa15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 ZRSR2Q15696 482 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-204ENST00000389857 JPH4Q96JJ6 628 aa15.34■□□□□ 0.05
CCDC88C-204ENST00000389857 SDF4Q9BRK5 362 aa15.34■□□□□ 0.05
CCDC88C-204ENST00000389857 KLHL34Q8N239 644 aa15.34■□□□□ 0.05
CCDC88C-204ENST00000389857 DCAF8L1A6NGE4 600 aa15.33■□□□□ 0.05
CCDC88C-204ENST00000389857 MTERF4Q7Z6M4 381 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-204ENST00000389857 DHX57Q6P158 1386 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-204ENST00000389857 PIP4K2AP48426 406 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-204ENST00000389857 KIF6Q6ZMV9 814 aa15.33■□□□□ 0.04
CCDC88C-204ENST00000389857 MROH2BQ7Z745 1585 aa15.32■□□□□ 0.04
CCDC88C-204ENST00000389857 AIMP1Q12904 312 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-204ENST00000389857 CCAR1Q8IX12 1150 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-204ENST00000389857 H0YHG0 523 aa15.32■□□□□ 0.04
CCDC88C-204ENST00000389857 ERLIN2O94905 339 aa15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 FANCIQ9NVI1 1328 aa15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 WIZO95785 1651 aa15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 FSD1Q9BTV5 496 aa15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 ZNF396Q96N95 335 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 LNPKQ9C0E8 428 aa15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 KINO60870 393 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-204ENST00000389857 NASPP49321 788 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-204ENST00000389857 CUX1P39880 1505 aa15.3■□□□□ 0.04
CCDC88C-204ENST00000389857 DHX8Q14562 1220 aaKnown RBP15.3■□□□□ 0.04
CCDC88C-204ENST00000389857 PAF1Q8N7H5 531 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 SMC2O95347 1197 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 SMG6Q86US8 1419 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 CCDC30Q5VVM6 783 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 PDCP20941 246 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 MCM2P49736 904 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 TTLL5Q6EMB2 1281 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 ANKRD18AQ8IVF6 992 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 ERC1Q8IUD2 1116 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 STAC3Q96MF2 364 aa15.29■□□□□ 0.04
CCDC88C-204ENST00000389857 TXLNBQ8N3L3 684 aa15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 KRT18P05783 430 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 MTMR7Q9Y216 660 aa15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 PTPRGP23470 1445 aa15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 CLASRPQ8N2M8 674 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 HMOX1P09601 288 aa15.28■□□□□ 0.04
CCDC88C-204ENST00000389857 MRE11P49959 708 aa15.27■□□□□ 0.04
CCDC88C-204ENST00000389857 TRIM5Q9C035 493 aa15.27■□□□□ 0.04
CCDC88C-204ENST00000389857 LUC7LQ9NQ29 371 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-204ENST00000389857 GNAI3P08754 354 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms