RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 TOP2BQ02880 1626 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 TROQ12816 1431 aaPredicted RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 PPP2R5BQ15173 497 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 IRX6P78412 446 aaPredicted RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 WDR33Q9C0J8 1336 aaKnown RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 CCDC30Q5VVM6 783 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 ACBD3Q9H3P7 528 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 DIAPH1O60610 1272 aaKnown RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 NBR1Q14596 966 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 UHRF1BP1Q6BDS2 1440 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 IFT140Q96RY7 1462 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 JMYQ8N9B5 988 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 CCDC66A2RUB6 948 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 DDX58O95786 925 aaKnown RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 FRAT1Q92837 279 aaPredicted RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 TRHP20396 242 aaPredicted RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 ARGLU1Q9NWB6 273 aaPredicted RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 ADAMTS8Q9UP79 889 aa5.98□□□□□ -1.45
PCDH9-201ENST00000377861 DDX49Q9Y6V7 483 aaKnown RBP5.98□□□□□ -1.45
PCDH9-201ENST00000377861 DNTTIP2Q5QJE6 756 aaKnown RBP5.97□□□□□ -1.45
PCDH9-201ENST00000377861 ATF7IPQ6VMQ6 1270 aa5.97□□□□□ -1.45
PCDH9-201ENST00000377861 SH2B1Q9NRF2 756 aaPredicted RBP5.97□□□□□ -1.45
PCDH9-201ENST00000377861 AEBP1Q8IUX7 1158 aa5.97□□□□□ -1.45
PCDH9-201ENST00000377861 CWC15Q9P013 229 aaKnown RBP5.97□□□□□ -1.45
PCDH9-201ENST00000377861 V9GYY5 206 aaPredicted RBP5.97□□□□□ -1.45
PCDH9-201ENST00000377861 ANKRD20A12PQ8NF67 263 aa5.97□□□□□ -1.45
PCDH9-201ENST00000377861 OSCARQ8IYS5 282 aa5.97□□□□□ -1.45
PCDH9-201ENST00000377861 SCAND2PQ9GZW5 306 aaPredicted RBP5.97□□□□□ -1.45
PCDH9-201ENST00000377861 FGD1P98174 961 aa5.96□□□□□ -1.45
PCDH9-201ENST00000377861 FEZ1Q99689 392 aa5.96□□□□□ -1.45
PCDH9-201ENST00000377861 SRPK2P78362 688 aaKnown RBP5.96□□□□□ -1.45
PCDH9-201ENST00000377861 POLR3GO15318 223 aaPredicted RBP5.96□□□□□ -1.46
PCDH9-201ENST00000377861 KCNJ4P48050 445 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 IFT57Q9NWB7 429 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 PTPRCP08575 1304 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 ARAP1Q96P48 1450 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 SBNO2Q9Y2G9 1366 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 GOLGA6L9A6NEM1 432 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 COG3Q96JB2 828 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 DYNC1I1O14576 645 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 TRAK2O60296 914 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 GAS2L2Q8NHY3 880 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 JAKMIP3Q5VZ66 844 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 PPP2R1AP30153 589 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 CTNNA3Q9UI47 895 aa5.96□□□□□ -1.46
PCDH9-201ENST00000377861 RTEL1-TNFRSF6BF6WH68 1400 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 KCNH8Q96L42 1107 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 C14orf93Q9H972 538 aaKnown RBP5.95□□□□□ -1.46
PCDH9-201ENST00000377861 USP25Q9UHP3 1055 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 CDR1P51861 262 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC61Q9Y6R9 512 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 CDC45O75419 566 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 FMNL3Q8IVF7 1028 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 RPRD2Q5VT52 1461 aaKnown RBP5.95□□□□□ -1.46
PCDH9-201ENST00000377861 SRRTQ9BXP5 876 aaKnown RBP5.95□□□□□ -1.46
PCDH9-201ENST00000377861 GOLGA6L19H0YKK7 550 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 POLA1P09884 1462 aaPredicted RBP5.95□□□□□ -1.46
PCDH9-201ENST00000377861 ZSCAN30Q86W11 494 aa5.95□□□□□ -1.46
PCDH9-201ENST00000377861 KIF3BO15066 747 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 NEXNQ0ZGT2 675 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 ZNHIT6Q9NWK9 470 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 FAM13BQ9NYF5 915 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 IPO7O95373 1038 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 CT47A1Q5JQC4 288 aaPredicted RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 LUC7LQ9NQ29 371 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 CHGAP10645 457 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 THOC2Q8NI27 1593 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 NFKBIBQ15653 356 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 TMTC2Q8N394 836 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 CC2D1BQ5T0F9 858 aaKnown RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 NCOA2Q15596 1464 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 ESPNB1AK53 854 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 TCP11L2Q8N4U5 519 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 CAGE1Q8TC20 777 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 POLR3AO14802 1390 aaPredicted RBP5.94□□□□□ -1.46
PCDH9-201ENST00000377861 MCM4P33991 863 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 KANK3Q6NY19 840 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 CLEC17AQ6ZS10 378 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 ITPRIPQ8IWB1 547 aa5.94□□□□□ -1.46
PCDH9-201ENST00000377861 KLHL40Q2TBA0 621 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 PER1O15534 1290 aaPredicted RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CTR9Q6PD62 1173 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 XBP1P17861 261 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 SF3B2Q13435 895 aaKnown RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CLCN1P35523 988 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 MVPQ14764 893 aaKnown RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 MYO6Q9UM54 1294 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 GSDMDP57764 484 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC192P0DO97 292 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC146Q8IYE0 955 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 HOXB7P09629 217 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 APAF1O14727 1248 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CLASRPQ8N2M8 674 aaKnown RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 IBTKQ9P2D0 1353 aaPredicted RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 BECN2A8MW95 431 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 NAP1L5Q96NT1 182 aaPredicted RBP5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC141Q6ZP82 1450 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 CCDC196A0A1B0GTZ2 297 aa5.93□□□□□ -1.46
PCDH9-201ENST00000377861 SETQ01105 290 aaPredicted RBP5.92□□□□□ -1.46
PCDH9-201ENST00000377861 IQCEQ6IPM2 695 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms