RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SMC4Q9NTJ3 1288 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 MS4A1P11836 297 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 GNL1P36915 607 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-202ENST00000375405 CDK5RAP3Q96JB5 506 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 PDE4AP27815 886 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 HSP90B2PQ58FF3 399 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 RAB3IL1Q8TBN0 382 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 TMCO5BA8MYB1 307 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 ECM2O94769 699 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-202ENST00000375405 GIMAP7Q8NHV1 300 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 ZCRB1Q8TBF4 217 aaKnown RBP5.58□□□□□ -1.52
SCN1A-202ENST00000375405 RRP7BPQ9NSQ0 103 aa5.58□□□□□ -1.52
SCN1A-202ENST00000375405 ATP2C2O75185 946 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 SATB1Q01826 763 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 PMFBP1Q8TBY8 1022 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 HDGFP51858 240 aaKnown RBP5.57□□□□□ -1.52
SCN1A-202ENST00000375405 RWDD1Q9H446 243 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-202ENST00000375405 CCDC91Q7Z6B0 441 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 ZNF652Q9Y2D9 606 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 APBB1IPQ7Z5R6 666 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-202ENST00000375405 SPAG9O60271 1321 aaKnown RBP5.57□□□□□ -1.52
SCN1A-202ENST00000375405 GOLGA6L7A0A1B0GV03 622 aa5.57□□□□□ -1.52
SCN1A-202ENST00000375405 STK31Q9BXU1 1019 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 CPLX2Q6PUV4 134 aaKnown RBP5.56□□□□□ -1.52
SCN1A-202ENST00000375405 ACBD3Q9H3P7 528 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 CHMP5Q9NZZ3 219 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 E9PSI1 815 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 MAFGO15525 162 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 DNAI2Q9GZS0 605 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 PRKCSHP14314 528 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-202ENST00000375405 CENPQQ7L2Z9 268 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-202ENST00000375405 CPLX1O14810 134 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 PLIN1O60240 522 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 NUCB2P80303 420 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 LEKR1Q6ZMV7 388 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 BCL2L13Q9BXK5 485 aa5.56□□□□□ -1.52
SCN1A-202ENST00000375405 BRPF1P55201 1214 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-202ENST00000375405 CT47B1P0C2W7 299 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-202ENST00000375405 RBM25P49756 843 aaKnown RBP5.55□□□□□ -1.52
SCN1A-202ENST00000375405 TRDNQ13061 729 aa5.55□□□□□ -1.52
SCN1A-202ENST00000375405 RILPL2Q969X0 211 aa5.55□□□□□ -1.52
SCN1A-202ENST00000375405 NUTM2FA1L443 756 aa5.55□□□□□ -1.52
SCN1A-202ENST00000375405 FERP16591 822 aa5.55□□□□□ -1.52
SCN1A-202ENST00000375405 ERCC5P28715 1186 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-202ENST00000375405 NOC2LQ9Y3T9 749 aaKnown RBP5.55□□□□□ -1.52
SCN1A-202ENST00000375405 EPB41L2O43491 1005 aaKnown RBP5.55□□□□□ -1.52
SCN1A-202ENST00000375405 UBE4AQ14139 1066 aa5.55□□□□□ -1.52
SCN1A-202ENST00000375405 MYO15BQ96JP2 1530 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 MRE11P49959 708 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 ITPRIPQ8IWB1 547 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 RUFY2Q8WXA3 655 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 FAM177BA6PVY3 158 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 CDCA8Q53HL2 280 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 CCDC129Q6ZRS4 1044 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 RSPH3Q86UC2 560 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 FAM184BQ9ULE4 1060 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 WASHC2AQ641Q2 1341 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 ANKRD18BA2A2Z9 1011 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 CFAP58Q5T655 872 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 TICAM2Q86XR7 235 aa5.54□□□□□ -1.52
SCN1A-202ENST00000375405 PPP1R12AO14974 1030 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-202ENST00000375405 BRMS1Q9HCU9 246 aa5.53□□□□□ -1.52
SCN1A-202ENST00000375405 CFAP45Q9UL16 551 aa5.53□□□□□ -1.52
SCN1A-202ENST00000375405 ZSCAN29Q8IWY8 852 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-202ENST00000375405 DCAF1Q9Y4B6 1507 aa5.53□□□□□ -1.52
SCN1A-202ENST00000375405 RIOK3O14730 519 aaKnown RBP5.53□□□□□ -1.52
SCN1A-202ENST00000375405 PSMC4P43686 418 aa5.53□□□□□ -1.52
SCN1A-202ENST00000375405 LRRFIP1Q32MZ4 808 aaKnown RBP5.53□□□□□ -1.52
SCN1A-202ENST00000375405 OTUD6BQ8N6M0 293 aa5.53□□□□□ -1.52
SCN1A-202ENST00000375405 MAGEC2Q9UBF1 373 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 GOLGA6L9A6NEM1 432 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 ATP2B1P20020 1258 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 GTF2F1P35269 517 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 NOP9Q86U38 636 aaKnown RBP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 TANGO6Q9C0B7 1094 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 CCDC113Q9H0I3 377 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 ERCC3P19447 782 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 SAFBQ15424 915 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 ERC1Q8IUD2 1116 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 BIN2Q9UBW5 565 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 ODF2LQ9ULJ1 636 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 KIAA0754O94854 1291 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 PRC1O43663 620 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 AMPHP49418 695 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 GIGYF2Q6Y7W6 1299 aaKnown RBP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 NGDNQ8NEJ9 315 aaKnown RBP5.52□□□□□ -1.53
SCN1A-202ENST00000375405 SIRT1Q96EB6 747 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 PPME1Q9Y570 386 aa5.52□□□□□ -1.53
SCN1A-202ENST00000375405 FAM193AP78312 1265 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 MAP2K1Q02750 393 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-202ENST00000375405 TAF12Q16514 161 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 C1orf141Q5JVX7 400 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 SFMBT1Q9UHJ3 866 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 HDAC5Q9UQL6 1122 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 PRPF40AO75400 957 aaKnown RBP5.51□□□□□ -1.53
SCN1A-202ENST00000375405 ZFYVE1Q9HBF4 777 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 NDC80O14777 642 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 OPA1O60313 960 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 BICD2Q8TD16 824 aa5.51□□□□□ -1.53
SCN1A-202ENST00000375405 CHMP4CQ96CF2 233 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms