RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 KIAA0586Q9BVV6 1533 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 GNL2Q13823 731 aaKnown RBP8.06□□□□□ -1.12
SMC1A-202ENST00000375340 GRIN2AQ12879 1464 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 RALGAPBQ86X10 1494 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 VGFO15240 615 aaPredicted RBP8.06□□□□□ -1.12
SMC1A-202ENST00000375340 FOSBP53539 338 aa8.06□□□□□ -1.12
SMC1A-202ENST00000375340 KIAA0556O60303 1618 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 TCOF1Q13428 1488 aaKnown RBP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 ZNF608Q9ULD9 1512 aaPredicted RBP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 PHF14O94880 888 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 NGDNQ8NEJ9 315 aaKnown RBP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 DNAJC5BQ9UF47 199 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 KIF16BQ96L93 1317 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 HDGFP51858 240 aaKnown RBP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 EIF2S2P20042 333 aaKnown RBP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.05□□□□□ -1.12
SMC1A-202ENST00000375340 ANO2Q9NQ90 1003 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 SCAPERQ9BY12 1400 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 ADAMTS12P58397 1594 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 CDC45O75419 566 aa8.05□□□□□ -1.12
SMC1A-202ENST00000375340 FAM13BQ9NYF5 915 aa8.04□□□□□ -1.12
SMC1A-202ENST00000375340 GPRASP1Q5JY77 1395 aa8.04□□□□□ -1.12
SMC1A-202ENST00000375340 NASPP49321 788 aaPredicted RBP8.04□□□□□ -1.12
SMC1A-202ENST00000375340 CAVIN1Q6NZI2 390 aaKnown RBP8.04□□□□□ -1.12
SMC1A-202ENST00000375340 WWC1Q8IX03 1113 aa8.04□□□□□ -1.12
SMC1A-202ENST00000375340 FBXW7Q969H0 707 aa8.04□□□□□ -1.12
SMC1A-202ENST00000375340 MVPQ14764 893 aaKnown RBP8.04□□□□□ -1.12
SMC1A-202ENST00000375340 FAM43AQ8N2R8 423 aa8.04□□□□□ -1.12
SMC1A-202ENST00000375340 ZNF428Q96B54 188 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 INTS3Q68E01 1043 aaKnown RBP8.03□□□□□ -1.12
SMC1A-202ENST00000375340 PRKAR2BP31323 418 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 NUTM2GQ5VZR2 741 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 IGHDP01880 384 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 PDE3AQ14432 1141 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 GPATCH8Q9UKJ3 1502 aaKnown RBP8.03□□□□□ -1.12
SMC1A-202ENST00000375340 NINLQ9Y2I6 1382 aa8.03□□□□□ -1.12
SMC1A-202ENST00000375340 MAP4K4O95819 1239 aaPredicted RBP8.03□□□□□ -1.12
SMC1A-202ENST00000375340 SYCP2Q9BX26 1530 aa8.02□□□□□ -1.12
SMC1A-202ENST00000375340 NUP153P49790 1475 aaKnown RBP8.02□□□□□ -1.12
SMC1A-202ENST00000375340 PRAM1Q96QH2 718 aa8.02□□□□□ -1.13
SMC1A-202ENST00000375340 MAGI3Q5TCQ9 1506 aa8.02□□□□□ -1.13
SMC1A-202ENST00000375340 RNF214Q8ND24 703 aa8.02□□□□□ -1.13
SMC1A-202ENST00000375340 R3HCC1Q9Y3T6 440 aaKnown RBP8.02□□□□□ -1.13
SMC1A-202ENST00000375340 MRE11P49959 708 aa8.02□□□□□ -1.13
SMC1A-202ENST00000375340 RBM10P98175 930 aaKnown RBP8.02□□□□□ -1.13
SMC1A-202ENST00000375340 CSB-PGBD3P0DP91 1061 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 CCDC27Q2M243 656 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 TSPYL4Q9UJ04 414 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 EIF2AK4Q9P2K8 1649 aaKnown RBP8.01□□□□□ -1.13
SMC1A-202ENST00000375340 REC8O95072 547 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 CSPP1Q1MSJ5 1256 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 DUSP27Q5VZP5 1158 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 NGEFQ8N5V2 710 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 GNAI1P63096 354 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 DHX29Q7Z478 1369 aaKnown RBP8.01□□□□□ -1.13
SMC1A-202ENST00000375340 SAMD9Q5K651 1589 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 TMEM57Q8N5G2 664 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 API5Q9BZZ5 524 aaKnown RBP8.01□□□□□ -1.13
SMC1A-202ENST00000375340 PRPF40AO75400 957 aaKnown RBP8.01□□□□□ -1.13
SMC1A-202ENST00000375340 MPNDQ8N594 471 aa8.01□□□□□ -1.13
SMC1A-202ENST00000375340 ZNF592Q92610 1267 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 DIAPH3Q9NSV4 1193 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 H3BQV1 296 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 CDK11BP21127 795 aaKnown RBP8□□□□□ -1.13
SMC1A-202ENST00000375340 FKBP5Q13451 457 aaPredicted RBP8□□□□□ -1.13
SMC1A-202ENST00000375340 IFFO2Q5TF58 517 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 GRPEL1Q9HAV7 217 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 LRPPRCP42704 1394 aaKnown RBP8□□□□□ -1.13
SMC1A-202ENST00000375340 CHD1LQ86WJ1 897 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 PZPP20742 1482 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 TEX14Q8IWB6 1497 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 CDK19Q9BWU1 502 aa8□□□□□ -1.13
SMC1A-202ENST00000375340 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.99□□□□□ -1.13
SMC1A-202ENST00000375340 ASXL1Q8IXJ9 1541 aa7.99□□□□□ -1.13
SMC1A-202ENST00000375340 THUMPD2Q9BTF0 503 aaKnown RBP7.99□□□□□ -1.13
SMC1A-202ENST00000375340 NRDCO43847 1150 aa7.99□□□□□ -1.13
SMC1A-202ENST00000375340 WDR63Q8IWG1 891 aa7.99□□□□□ -1.13
SMC1A-202ENST00000375340 PRAG1Q86YV5 1406 aa7.99□□□□□ -1.13
SMC1A-202ENST00000375340 TWISTNBQ3B726 338 aaPredicted RBP7.99□□□□□ -1.13
SMC1A-202ENST00000375340 ABCA5Q8WWZ7 1642 aa7.99□□□□□ -1.13
SMC1A-202ENST00000375340 VPS37CA5D8V6 355 aaPredicted RBP7.99□□□□□ -1.13
SMC1A-202ENST00000375340 RARSP54136 660 aaKnown RBP7.99□□□□□ -1.13
SMC1A-202ENST00000375340 RRS1Q15050 365 aaKnown RBP7.98□□□□□ -1.13
SMC1A-202ENST00000375340 K7ELQ4 463 aaPredicted RBP7.98□□□□□ -1.13
SMC1A-202ENST00000375340 SMARCA5O60264 1052 aaPredicted RBP7.98□□□□□ -1.13
SMC1A-202ENST00000375340 AAMPQ13685 434 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 CABP1Q9NZU7 370 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 ATF7IPQ6VMQ6 1270 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 SCAF11Q99590 1463 aaKnown RBP7.98□□□□□ -1.13
SMC1A-202ENST00000375340 ZMYM4Q5VZL5 1548 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 NUCB2P80303 420 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 GORABQ5T7V8 394 aa7.98□□□□□ -1.13
SMC1A-202ENST00000375340 CREBRFQ8IUR6 639 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 TBC1D2Q9BYX2 928 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 ADGRF5Q8IZF2 1346 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 PARD3Q8TEW0 1356 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 C8orf34Q49A92 452 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 KDM5CP41229 1560 aa7.97□□□□□ -1.13
SMC1A-202ENST00000375340 HTATSF1O43719 755 aaKnown RBP7.97□□□□□ -1.13
SMC1A-202ENST00000375340 NPHP1O15259 732 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms