RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 IFT57Q9NWB7 429 aa13.92□□□□□ -0.18
VCL-202ENST00000372755 PSMA5P28066 241 aa13.92□□□□□ -0.18
VCL-202ENST00000372755 EPS15P42566 896 aa13.92□□□□□ -0.18
VCL-202ENST00000372755 RIC3Q7Z5B4 369 aa13.91□□□□□ -0.18
VCL-202ENST00000372755 HSP90B2PQ58FF3 399 aa13.91□□□□□ -0.18
VCL-202ENST00000372755 WASHC4Q2M389 1173 aa13.91□□□□□ -0.18
VCL-202ENST00000372755 FBXO3Q9UK99 471 aa13.91□□□□□ -0.18
VCL-202ENST00000372755 RDXP35241 583 aaKnown RBP13.91□□□□□ -0.18
VCL-202ENST00000372755 NOM1Q5C9Z4 860 aaKnown RBP13.91□□□□□ -0.18
VCL-202ENST00000372755 CDC45O75419 566 aa13.9□□□□□ -0.18
VCL-202ENST00000372755 NEUROD6Q96NK8 337 aa13.9□□□□□ -0.18
VCL-202ENST00000372755 OFD1O75665 1012 aa13.9□□□□□ -0.18
VCL-202ENST00000372755 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.9□□□□□ -0.18
VCL-202ENST00000372755 DHX57Q6P158 1386 aaKnown RBP13.9□□□□□ -0.18
VCL-202ENST00000372755 STAC3Q96MF2 364 aa13.9□□□□□ -0.18
VCL-202ENST00000372755 FANCIQ9NVI1 1328 aa13.9□□□□□ -0.18
VCL-202ENST00000372755 C22orf23Q9BZE7 217 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 MIA2Q96PC5 1412 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 FOSBP53539 338 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 FAM13BQ9NYF5 915 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 MYO6Q9UM54 1294 aa13.89□□□□□ -0.19
VCL-202ENST00000372755 UBTFL1P0CB47 393 aaPredicted RBP13.88□□□□□ -0.19
VCL-202ENST00000372755 FAM43AQ8N2R8 423 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 PTPRGP23470 1445 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 LETM1O95202 739 aaPredicted RBP13.88□□□□□ -0.19
VCL-202ENST00000372755 ERCC4Q92889 916 aaPredicted RBP13.88□□□□□ -0.19
VCL-202ENST00000372755 CCDC39Q9UFE4 941 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 CCDC27Q2M243 656 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 VSIG10Q8N0Z9 540 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 CALRP27797 417 aaKnown RBP13.88□□□□□ -0.19
VCL-202ENST00000372755 HSP90AB2PQ58FF8 381 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 SART3Q15020 963 aaKnown RBP13.88□□□□□ -0.19
VCL-202ENST00000372755 CNTROBQ8N137 903 aa13.88□□□□□ -0.19
VCL-202ENST00000372755 DCTN1Q14203 1278 aa13.87□□□□□ -0.19
VCL-202ENST00000372755 CADPSQ9ULU8 1353 aa13.87□□□□□ -0.19
VCL-202ENST00000372755 LNPKQ9C0E8 428 aa13.87□□□□□ -0.19
VCL-202ENST00000372755 CAGE1Q8TC20 777 aa13.86□□□□□ -0.19
VCL-202ENST00000372755 TBC1D2BQ9UPU7 963 aa13.86□□□□□ -0.19
VCL-202ENST00000372755 SAMD1Q6SPF0 538 aaPredicted RBP13.86□□□□□ -0.19
VCL-202ENST00000372755 FYB1O15117 783 aa13.86□□□□□ -0.19
VCL-202ENST00000372755 PDILTQ8N807 584 aa13.86□□□□□ -0.19
VCL-202ENST00000372755 SDF4Q9BRK5 362 aa13.86□□□□□ -0.19
VCL-202ENST00000372755 ZFYVE27Q5T4F4 411 aa13.85□□□□□ -0.19
VCL-202ENST00000372755 ATF3P18847 181 aa13.85□□□□□ -0.19
VCL-202ENST00000372755 FSD1Q9BTV5 496 aa13.85□□□□□ -0.19
VCL-202ENST00000372755 AIMP1Q12904 312 aaKnown RBP13.85□□□□□ -0.19
VCL-202ENST00000372755 TOP2AP11388 1531 aaKnown RBP13.85□□□□□ -0.19
VCL-202ENST00000372755 HIP1O00291 1037 aa13.84□□□□□ -0.19
VCL-202ENST00000372755 CCP110O43303 1012 aa13.84□□□□□ -0.19
VCL-202ENST00000372755 GNAI3P08754 354 aa13.84□□□□□ -0.19
VCL-202ENST00000372755 SLC3A2P08195 630 aaKnown RBP13.84□□□□□ -0.19
VCL-202ENST00000372755 KIF7Q2M1P5 1343 aa13.83□□□□□ -0.19
VCL-202ENST00000372755 SMARCE1Q969G3 411 aa13.83□□□□□ -0.2
VCL-202ENST00000372755 NLRP2Q9NX02 1062 aa13.83□□□□□ -0.2
VCL-202ENST00000372755 HMOX1P09601 288 aa13.83□□□□□ -0.2
VCL-202ENST00000372755 PIP4K2AP48426 406 aaPredicted RBP13.83□□□□□ -0.2
VCL-202ENST00000372755 MRE11P49959 708 aa13.83□□□□□ -0.2
VCL-202ENST00000372755 FILIP1LQ4L180 1135 aa13.83□□□□□ -0.2
VCL-202ENST00000372755 IKQ13123 557 aaPredicted RBP13.83□□□□□ -0.2
VCL-202ENST00000372755 CLASRPQ8N2M8 674 aaKnown RBP13.83□□□□□ -0.2
VCL-202ENST00000372755 TXLNAP40222 546 aa13.82□□□□□ -0.2
VCL-202ENST00000372755 CCDC30Q5VVM6 783 aa13.82□□□□□ -0.2
VCL-202ENST00000372755 WWC2Q6AWC2 1192 aa13.82□□□□□ -0.2
VCL-202ENST00000372755 CCDC191Q8NCU4 936 aa13.82□□□□□ -0.2
VCL-202ENST00000372755 MAGEC2Q9UBF1 373 aaPredicted RBP13.82□□□□□ -0.2
VCL-202ENST00000372755 CDK5RAP3Q96JB5 506 aa13.82□□□□□ -0.2
VCL-202ENST00000372755 MCM2P49736 904 aa13.81□□□□□ -0.2
VCL-202ENST00000372755 MBD3O95983 291 aa13.81□□□□□ -0.2
VCL-202ENST00000372755 CWC15Q9P013 229 aaKnown RBP13.81□□□□□ -0.2
VCL-202ENST00000372755 MYOM3Q5VTT5 1437 aa13.81□□□□□ -0.2
VCL-202ENST00000372755 PDCP20941 246 aa13.81□□□□□ -0.2
VCL-202ENST00000372755 NASPP49321 788 aaPredicted RBP13.81□□□□□ -0.2
VCL-202ENST00000372755 MTERF4Q7Z6M4 381 aaKnown RBP13.81□□□□□ -0.2
VCL-202ENST00000372755 KINO60870 393 aaKnown RBP13.81□□□□□ -0.2
VCL-202ENST00000372755 ZNF396Q96N95 335 aaPredicted RBP13.81□□□□□ -0.2
VCL-202ENST00000372755 ERC1Q8IUD2 1116 aa13.8□□□□□ -0.2
VCL-202ENST00000372755 KLHL34Q8N239 644 aa13.8□□□□□ -0.2
VCL-202ENST00000372755 GAS2L2Q8NHY3 880 aa13.8□□□□□ -0.2
VCL-202ENST00000372755 KIF6Q6ZMV9 814 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 TMEM132AQ24JP5 1023 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 DHX8Q14562 1220 aaKnown RBP13.79□□□□□ -0.2
VCL-202ENST00000372755 TRIM5Q9C035 493 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 SYCP1Q15431 976 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 CCAR1Q8IX12 1150 aaKnown RBP13.79□□□□□ -0.2
VCL-202ENST00000372755 PANK1Q8TE04 598 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 MAP7D2Q96T17 732 aa13.79□□□□□ -0.2
VCL-202ENST00000372755 SMC2O95347 1197 aa13.78□□□□□ -0.2
VCL-202ENST00000372755 MTMR7Q9Y216 660 aa13.78□□□□□ -0.2
VCL-202ENST00000372755 GGNBP2Q9H3C7 697 aa13.78□□□□□ -0.2
VCL-202ENST00000372755 SURF6O75683 361 aaKnown RBP13.78□□□□□ -0.2
VCL-202ENST00000372755 DNAJC2Q99543 621 aaKnown RBP13.78□□□□□ -0.2
VCL-202ENST00000372755 TSPY26PQ9H489 355 aa13.78□□□□□ -0.2
VCL-202ENST00000372755 CCDC7Q96M83 1385 aa13.77□□□□□ -0.2
VCL-202ENST00000372755 H0YHG0 523 aa13.77□□□□□ -0.2
VCL-202ENST00000372755 KRT18P05783 430 aaKnown RBP13.77□□□□□ -0.21
VCL-202ENST00000372755 PLEKHO1Q53GL0 409 aaPredicted RBP13.77□□□□□ -0.21
VCL-202ENST00000372755 GPRASP1Q5JY77 1395 aa13.77□□□□□ -0.21
VCL-202ENST00000372755 GNL3LQ9NVN8 582 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms