RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 AFAP1Q8N556 730 aa12.86□□□□□ -0.35
TPM3-213ENST00000368545 CAMSAP2Q08AD1 1489 aa12.86□□□□□ -0.35
TPM3-213ENST00000368545 HFM1A2PYH4 1435 aa12.85□□□□□ -0.35
TPM3-213ENST00000368545 PDE4DQ08499 809 aa12.85□□□□□ -0.35
TPM3-213ENST00000368545 GCC2Q8IWJ2 1684 aa12.85□□□□□ -0.35
TPM3-213ENST00000368545 CROCC2H7BZ55 1655 aa12.85□□□□□ -0.35
TPM3-213ENST00000368545 RAB3GAP2Q9H2M9 1393 aa12.84□□□□□ -0.35
TPM3-213ENST00000368545 CFDP1Q9UEE9 299 aaPredicted RBP12.84□□□□□ -0.35
TPM3-213ENST00000368545 CDC42BPBQ9Y5S2 1711 aa12.84□□□□□ -0.35
TPM3-213ENST00000368545 TNRQ92752 1358 aa12.84□□□□□ -0.35
TPM3-213ENST00000368545 MKRN3Q13064 507 aaKnown RBP12.83□□□□□ -0.36
TPM3-213ENST00000368545 FARP1Q9Y4F1 1045 aaPredicted RBP12.83□□□□□ -0.36
TPM3-213ENST00000368545 DAPK1P53355 1430 aa12.83□□□□□ -0.36
TPM3-213ENST00000368545 CLSPNQ9HAW4 1339 aa12.82□□□□□ -0.36
TPM3-213ENST00000368545 MS4A4AQ96JQ5 239 aa12.82□□□□□ -0.36
TPM3-213ENST00000368545 ADGBQ8N7X0 1667 aa12.82□□□□□ -0.36
TPM3-213ENST00000368545 A2MP01023 1474 aa12.82□□□□□ -0.36
TPM3-213ENST00000368545 ATP7AQ04656 1500 aa12.81□□□□□ -0.36
TPM3-213ENST00000368545 PZPP20742 1482 aa12.81□□□□□ -0.36
TPM3-213ENST00000368545 CACNB1Q02641 598 aaPredicted RBP12.81□□□□□ -0.36
TPM3-213ENST00000368545 JCADQ9P266 1359 aa12.81□□□□□ -0.36
TPM3-213ENST00000368545 SAMD9LQ8IVG5 1584 aa12.8□□□□□ -0.36
TPM3-213ENST00000368545 DHX57Q6P158 1386 aaKnown RBP12.8□□□□□ -0.36
TPM3-213ENST00000368545 SPATA31A6Q5VVP1 1343 aa12.8□□□□□ -0.36
TPM3-213ENST00000368545 ROCK1Q13464 1354 aa12.8□□□□□ -0.36
TPM3-213ENST00000368545 ARHGEF5Q12774 1597 aa12.79□□□□□ -0.36
TPM3-213ENST00000368545 KIAA1107Q9UPP5 1409 aa12.79□□□□□ -0.36
TPM3-213ENST00000368545 NAIPQ13075 1403 aa12.79□□□□□ -0.36
TPM3-213ENST00000368545 SETD1AO15047 1707 aaKnown RBP12.79□□□□□ -0.36
TPM3-213ENST00000368545 ABCC5O15440 1437 aa12.78□□□□□ -0.36
TPM3-213ENST00000368545 POTEDQ86YR6 584 aa12.78□□□□□ -0.36
TPM3-213ENST00000368545 FAM117AQ9C073 453 aa12.78□□□□□ -0.36
TPM3-213ENST00000368545 SPAG9O60271 1321 aaKnown RBP12.77□□□□□ -0.36
TPM3-213ENST00000368545 INO80Q9ULG1 1556 aaPredicted RBP12.77□□□□□ -0.37
TPM3-213ENST00000368545 ABCC3O15438 1527 aa12.77□□□□□ -0.37
TPM3-213ENST00000368545 UGGT1Q9NYU2 1555 aa12.76□□□□□ -0.37
TPM3-213ENST00000368545 ADGRL2O95490 1459 aa12.76□□□□□ -0.37
TPM3-213ENST00000368545 ZNF644Q9H582 1327 aaPredicted RBP12.76□□□□□ -0.37
TPM3-213ENST00000368545 ACIN1Q9UKV3 1341 aaKnown RBP12.76□□□□□ -0.37
TPM3-213ENST00000368545 MAP3K13O43283 966 aa12.76□□□□□ -0.37
TPM3-213ENST00000368545 ZNF777Q9ULD5 760 aaPredicted RBP12.74□□□□□ -0.37
TPM3-213ENST00000368545 CCDC141Q6ZP82 1450 aa12.73□□□□□ -0.37
TPM3-213ENST00000368545 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
TPM3-213ENST00000368545 RTEL1-TNFRSF6BF6WH68 1400 aa12.73□□□□□ -0.37
TPM3-213ENST00000368545 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
TPM3-213ENST00000368545 SYCP2Q9BX26 1530 aa12.72□□□□□ -0.37
TPM3-213ENST00000368545 RSPH4AQ5TD94 716 aa12.72□□□□□ -0.37
TPM3-213ENST00000368545 NPM2Q86SE8 214 aaKnown RBP12.72□□□□□ -0.37
TPM3-213ENST00000368545 MBD5Q9P267 1494 aa12.72□□□□□ -0.37
TPM3-213ENST00000368545 MAST1Q9Y2H9 1570 aa12.72□□□□□ -0.37
TPM3-213ENST00000368545 ZC3H13Q5T200 1668 aaKnown RBP12.72□□□□□ -0.37
TPM3-213ENST00000368545 RXRBP28702 533 aa12.71□□□□□ -0.37
TPM3-213ENST00000368545 CHIC2Q9UKJ5 165 aa12.71□□□□□ -0.37
TPM3-213ENST00000368545 APBB1O00213 710 aa12.71□□□□□ -0.38
TPM3-213ENST00000368545 CCDC125Q86Z20 511 aa12.71□□□□□ -0.38
TPM3-213ENST00000368545 STRCP1A6NGW2 1772 aa12.71□□□□□ -0.38
TPM3-213ENST00000368545 PLEKHG3A1L390 1219 aa12.7□□□□□ -0.38
TPM3-213ENST00000368545 ANKRD30AQ9BXX3 1397 aa12.7□□□□□ -0.38
TPM3-213ENST00000368545 KIF12Q96FN5 646 aa12.7□□□□□ -0.38
TPM3-213ENST00000368545 RRP7BPQ9NSQ0 103 aa12.7□□□□□ -0.38
TPM3-213ENST00000368545 ROBO1Q9Y6N7 1651 aa12.69□□□□□ -0.38
TPM3-213ENST00000368545 GPR37O15354 613 aa12.68□□□□□ -0.38
TPM3-213ENST00000368545 PHLPP1O60346 1717 aa12.68□□□□□ -0.38
TPM3-213ENST00000368545 NCOA3Q9Y6Q9 1424 aa12.68□□□□□ -0.38
TPM3-213ENST00000368545 NKTRP30414 1462 aaKnown RBP12.68□□□□□ -0.38
TPM3-213ENST00000368545 SHPRHQ149N8 1683 aa12.67□□□□□ -0.38
TPM3-213ENST00000368545 TSPY4P0CV99 314 aa12.67□□□□□ -0.38
TPM3-213ENST00000368545 TSPY10P0CW01 314 aa12.67□□□□□ -0.38
TPM3-213ENST00000368545 SCAF11Q99590 1463 aaKnown RBP12.67□□□□□ -0.38
TPM3-213ENST00000368545 ATAD2Q6PL18 1390 aa12.67□□□□□ -0.38
TPM3-213ENST00000368545 DPYSL4O14531 572 aa12.67□□□□□ -0.38
TPM3-213ENST00000368545 LRP5O75197 1615 aa12.66□□□□□ -0.38
TPM3-213ENST00000368545 SLIT1O75093 1534 aa12.66□□□□□ -0.38
TPM3-213ENST00000368545 PPP1R15BQ5SWA1 713 aa12.65□□□□□ -0.38
TPM3-213ENST00000368545 MEX3CQ5U5Q3 659 aaKnown RBP12.65□□□□□ -0.38
TPM3-213ENST00000368545 DHX29Q7Z478 1369 aaKnown RBP12.65□□□□□ -0.38
TPM3-213ENST00000368545 XIRP1Q702N8 1843 aaKnown RBP12.65□□□□□ -0.38
TPM3-213ENST00000368545 HNRNPMP52272 730 aaKnown RBP eCLIP12.65□□□□□ -0.38
TPM3-213ENST00000368545 ARHGAP23Q9P227 1491 aa12.64□□□□□ -0.39
TPM3-213ENST00000368545 GGT6Q6P531 493 aa12.64□□□□□ -0.39
TPM3-213ENST00000368545 EMILIN3Q9NT22 766 aa12.64□□□□□ -0.39
TPM3-213ENST00000368545 DDRGK1Q96HY6 314 aa12.62□□□□□ -0.39
TPM3-213ENST00000368545 ANKRD50Q9ULJ7 1429 aa12.62□□□□□ -0.39
TPM3-213ENST00000368545 MSH6P52701 1360 aa12.62□□□□□ -0.39
TPM3-213ENST00000368545 KIF15Q9NS87 1388 aa12.62□□□□□ -0.39
TPM3-213ENST00000368545 AHDC1Q5TGY3 1603 aaPredicted RBP12.62□□□□□ -0.39
TPM3-213ENST00000368545 KDM5AP29375 1690 aaKnown RBP12.61□□□□□ -0.39
TPM3-213ENST00000368545 PDIA6Q15084 440 aa12.61□□□□□ -0.39
TPM3-213ENST00000368545 EID1Q9Y6B2 187 aa12.61□□□□□ -0.39
TPM3-213ENST00000368545 COL16A1Q07092 1604 aaPredicted RBP12.61□□□□□ -0.39
TPM3-213ENST00000368545 KCNA6P17658 529 aa12.61□□□□□ -0.39
TPM3-213ENST00000368545 FLIIQ13045 1269 aa12.61□□□□□ -0.39
TPM3-213ENST00000368545 NWD1Q149M9 1564 aa12.6□□□□□ -0.39
TPM3-213ENST00000368545 GPHNQ9NQX3 736 aaPredicted RBP12.6□□□□□ -0.39
TPM3-213ENST00000368545 RBM6P78332 1123 aaKnown RBP12.59□□□□□ -0.39
TPM3-213ENST00000368545 TRIM52Q96A61 297 aa12.59□□□□□ -0.39
TPM3-213ENST00000368545 NGLY1Q96IV0 654 aa12.59□□□□□ -0.39
TPM3-213ENST00000368545 PRDM15P57071 1507 aaPredicted RBP12.59□□□□□ -0.39
TPM3-213ENST00000368545 DUOX2Q9NRD8 1548 aa12.59□□□□□ -0.39
TPM3-213ENST00000368545 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms