RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TBX22Q9Y458 520 aa17.95■□□□□ 0.46
SQSTM1-201ENST00000360718 DIP2AQ14689 1571 aa17.95■□□□□ 0.46
SQSTM1-201ENST00000360718 MINK1Q8N4C8 1332 aaPredicted RBP17.95■□□□□ 0.46
SQSTM1-201ENST00000360718 ROBO2Q9HCK4 1378 aa17.94■□□□□ 0.46
SQSTM1-201ENST00000360718 PANK3Q9H999 370 aa17.93■□□□□ 0.46
SQSTM1-201ENST00000360718 PER1O15534 1290 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-201ENST00000360718 FKBP8Q14318 412 aa17.92■□□□□ 0.46
SQSTM1-201ENST00000360718 FAM135BQ49AJ0 1406 aa17.91■□□□□ 0.46
SQSTM1-201ENST00000360718 NCKAP5LQ9HCH0 1330 aa17.91■□□□□ 0.46
SQSTM1-201ENST00000360718 CNGB1Q14028 1251 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-201ENST00000360718 PRKRIP1Q9H875 184 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-201ENST00000360718 CABP2Q9NPB3 220 aa17.91■□□□□ 0.46
SQSTM1-201ENST00000360718 EVC2Q86UK5 1308 aa17.9■□□□□ 0.46
SQSTM1-201ENST00000360718 XRN1Q8IZH2 1706 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-201ENST00000360718 AMOTL2Q9Y2J4 779 aa17.89■□□□□ 0.46
SQSTM1-201ENST00000360718 SIRT1Q96EB6 747 aa17.89■□□□□ 0.45
SQSTM1-201ENST00000360718 TSHZ2Q9NRE2 1034 aa17.89■□□□□ 0.45
SQSTM1-201ENST00000360718 NPHP4O75161 1426 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-201ENST00000360718 HSPA2P54652 639 aa17.88■□□□□ 0.45
SQSTM1-201ENST00000360718 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.88■□□□□ 0.45
SQSTM1-201ENST00000360718 LMTK3Q96Q04 1460 aa17.87■□□□□ 0.45
SQSTM1-201ENST00000360718 SLC12A5Q9H2X9 1139 aa17.87■□□□□ 0.45
SQSTM1-201ENST00000360718 CHD2O14647 1828 aaKnown RBP17.87■□□□□ 0.45
SQSTM1-201ENST00000360718 CDK19Q9BWU1 502 aa17.86■□□□□ 0.45
SQSTM1-201ENST00000360718 KCNA6P17658 529 aa17.85■□□□□ 0.45
SQSTM1-201ENST00000360718 SRPK2P78362 688 aaKnown RBP17.85■□□□□ 0.45
SQSTM1-201ENST00000360718 PTCH1Q13635 1447 aa17.85■□□□□ 0.45
SQSTM1-201ENST00000360718 PUS7Q96PZ0 661 aaKnown RBP17.84■□□□□ 0.45
SQSTM1-201ENST00000360718 PIK3R4Q99570 1358 aa17.84■□□□□ 0.45
SQSTM1-201ENST00000360718 CCDC184Q52MB2 194 aa17.84■□□□□ 0.45
SQSTM1-201ENST00000360718 TMC1Q8TDI8 760 aa17.84■□□□□ 0.45
SQSTM1-201ENST00000360718 CARD14Q9BXL6 1004 aa17.84■□□□□ 0.45
SQSTM1-201ENST00000360718 KTN1Q86UP2 1357 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-201ENST00000360718 ADGRB2O60241 1585 aa17.81■□□□□ 0.44
SQSTM1-201ENST00000360718 WASLO00401 505 aaPredicted RBP17.81■□□□□ 0.44
SQSTM1-201ENST00000360718 AMER1Q5JTC6 1135 aaPredicted RBP17.8■□□□□ 0.44
SQSTM1-201ENST00000360718 CC2D1BQ5T0F9 858 aaKnown RBP17.8■□□□□ 0.44
SQSTM1-201ENST00000360718 KNSTRNQ9Y448 316 aa17.8■□□□□ 0.44
SQSTM1-201ENST00000360718 ATAD2Q6PL18 1390 aa17.79■□□□□ 0.44
SQSTM1-201ENST00000360718 CD163L1Q9NR16 1453 aa17.79■□□□□ 0.44
SQSTM1-201ENST00000360718 STRCQ7RTU9 1775 aa17.79■□□□□ 0.44
SQSTM1-201ENST00000360718 PARD3Q8TEW0 1356 aa17.78■□□□□ 0.44
SQSTM1-201ENST00000360718 RALBP1Q15311 655 aa17.78■□□□□ 0.44
SQSTM1-201ENST00000360718 RBM33Q96EV2 1170 aaKnown RBP17.77■□□□□ 0.44
SQSTM1-201ENST00000360718 PRR36Q9H6K5 1346 aa17.77■□□□□ 0.44
SQSTM1-201ENST00000360718 A0A1W2PP64 1363 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 ANKRD36BQ8N2N9 1353 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 NINLQ9Y2I6 1382 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 NSD3Q9BZ95 1437 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 CABP1Q9NZU7 370 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 ATP7BP35670 1465 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 NWD1Q149M9 1564 aa17.76■□□□□ 0.43
SQSTM1-201ENST00000360718 NALCNQ8IZF0 1738 aa17.75■□□□□ 0.43
SQSTM1-201ENST00000360718 HNRNPUQ00839 825 aaKnown RBP eCLIP17.75■□□□□ 0.43
SQSTM1-201ENST00000360718 USP32Q8NFA0 1604 aa17.74■□□□□ 0.43
SQSTM1-201ENST00000360718 NUDT16Q96DE0 195 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-201ENST00000360718 STRCP1A6NGW2 1772 aa17.74■□□□□ 0.43
SQSTM1-201ENST00000360718 NUTM2FA1L443 756 aa17.73■□□□□ 0.43
SQSTM1-201ENST00000360718 PPIP5K1Q6PFW1 1433 aa17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 MRS2Q9HD23 443 aa17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 RGPD8O14715 1765 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 TOPAZ1Q8N9V7 1692 aa17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 NPC1L1Q9UHC9 1359 aa17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 MYBBP1AQ9BQG0 1328 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-201ENST00000360718 CCDC61Q9Y6R9 512 aa17.69■□□□□ 0.42
SQSTM1-201ENST00000360718 TERF2IPQ9NYB0 399 aa17.69■□□□□ 0.42
SQSTM1-201ENST00000360718 FMN2Q9NZ56 1722 aa17.68■□□□□ 0.42
SQSTM1-201ENST00000360718 NKTRP30414 1462 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-201ENST00000360718 CPSF1Q10570 1443 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-201ENST00000360718 CDC42BPGQ6DT37 1551 aa17.68■□□□□ 0.42
SQSTM1-201ENST00000360718 AKAP12Q02952 1782 aa17.66■□□□□ 0.42
SQSTM1-201ENST00000360718 ADGRL3Q9HAR2 1447 aa17.66■□□□□ 0.42
SQSTM1-201ENST00000360718 ERICH6BQ5W0A0 696 aa17.66■□□□□ 0.42
SQSTM1-201ENST00000360718 BRD4O60885 1362 aaPredicted RBP17.66■□□□□ 0.42
SQSTM1-201ENST00000360718 ITSN1Q15811 1721 aa17.65■□□□□ 0.42
SQSTM1-201ENST00000360718 HDGFL2Q7Z4V5 671 aaPredicted RBP17.65■□□□□ 0.42
SQSTM1-201ENST00000360718 NLRP13Q86W25 1043 aa17.65■□□□□ 0.42
SQSTM1-201ENST00000360718 MON2Q7Z3U7 1717 aa17.65■□□□□ 0.42
SQSTM1-201ENST00000360718 CGNL1Q0VF96 1302 aa17.65■□□□□ 0.42
SQSTM1-201ENST00000360718 PPP2R1AP30153 589 aa17.64■□□□□ 0.41
SQSTM1-201ENST00000360718 PROSER2Q86WR7 435 aaPredicted RBP17.63■□□□□ 0.41
SQSTM1-201ENST00000360718 FYB1O15117 783 aa17.62■□□□□ 0.41
SQSTM1-201ENST00000360718 FAM9BQ8IZU0 186 aa17.62■□□□□ 0.41
SQSTM1-201ENST00000360718 KIF20BQ96Q89 1820 aa17.62■□□□□ 0.41
SQSTM1-201ENST00000360718 PLEKHG3A1L390 1219 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 GGNBP2Q9H3C7 697 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 ACEP12821 1306 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 ANKARQ7Z5J8 1434 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 ANKRD26Q9UPS8 1709 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 PMFBP1Q8TBY8 1022 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 NSD2O96028 1365 aa17.61■□□□□ 0.41
SQSTM1-201ENST00000360718 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.6■□□□□ 0.41
SQSTM1-201ENST00000360718 PNISRQ8TF01 805 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-201ENST00000360718 NRKQ7Z2Y5 1582 aa17.6■□□□□ 0.41
SQSTM1-201ENST00000360718 TMEM94Q12767 1356 aa17.6■□□□□ 0.41
SQSTM1-201ENST00000360718 EDC4Q6P2E9 1401 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-201ENST00000360718 TNNT2P45379 298 aaPredicted RBP17.59■□□□□ 0.41
SQSTM1-201ENST00000360718 C14orf37Q86TY3 774 aa17.59■□□□□ 0.41
SQSTM1-201ENST00000360718 MORC1Q86VD1 984 aa17.59■□□□□ 0.41
SQSTM1-201ENST00000360718 ANP32EQ9BTT0 268 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms