RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 MINK1Q8N4C8 1332 aaPredicted RBP31.82■■■□□ 2.68
SDF4-202ENST00000360001 PTPRUQ92729 1446 aa31.82■■■□□ 2.68
SDF4-202ENST00000360001 ROBO2Q9HCK4 1378 aa31.76■■■□□ 2.68
SDF4-202ENST00000360001 CABP2Q9NPB3 220 aa31.74■■■□□ 2.67
SDF4-202ENST00000360001 CNGB1Q14028 1251 aaPredicted RBP31.72■■■□□ 2.67
SDF4-202ENST00000360001 PIK3R4Q99570 1358 aa31.71■■■□□ 2.67
SDF4-202ENST00000360001 AMOTL2Q9Y2J4 779 aa31.71■■■□□ 2.67
SDF4-202ENST00000360001 XRN1Q8IZH2 1706 aaKnown RBP31.71■■■□□ 2.67
SDF4-202ENST00000360001 SRPK2P78362 688 aaKnown RBP31.7■■■□□ 2.66
SDF4-202ENST00000360001 KTN1Q86UP2 1357 aaKnown RBP31.69■■■□□ 2.66
SDF4-202ENST00000360001 CDK19Q9BWU1 502 aa31.68■■■□□ 2.66
SDF4-202ENST00000360001 SLC12A5Q9H2X9 1139 aa31.68■■■□□ 2.66
SDF4-202ENST00000360001 NPHP4O75161 1426 aaPredicted RBP31.68■■■□□ 2.66
SDF4-202ENST00000360001 PTCH1Q13635 1447 aa31.68■■■□□ 2.66
SDF4-202ENST00000360001 TMC1Q8TDI8 760 aa31.67■■■□□ 2.66
SDF4-202ENST00000360001 YTHDC1Q96MU7 727 aaKnown RBP31.67■■■□□ 2.66
SDF4-202ENST00000360001 ATAD2Q6PL18 1390 aa31.67■■■□□ 2.66
SDF4-202ENST00000360001 KNSTRNQ9Y448 316 aa31.67■■■□□ 2.66
SDF4-202ENST00000360001 PARD3Q8TEW0 1356 aa31.66■■■□□ 2.66
SDF4-202ENST00000360001 RALBP1Q15311 655 aa31.65■■■□□ 2.66
SDF4-202ENST00000360001 CARD14Q9BXL6 1004 aa31.65■■■□□ 2.66
SDF4-202ENST00000360001 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.65■■■□□ 2.66
SDF4-202ENST00000360001 NCKAP5LQ9HCH0 1330 aa31.64■■■□□ 2.66
SDF4-202ENST00000360001 NINLQ9Y2I6 1382 aa31.64■■■□□ 2.66
SDF4-202ENST00000360001 AMER1Q5JTC6 1135 aaPredicted RBP31.63■■■□□ 2.65
SDF4-202ENST00000360001 CCDC184Q52MB2 194 aa31.63■■■□□ 2.65
SDF4-202ENST00000360001 ADGRB2O60241 1585 aa31.62■■■□□ 2.65
SDF4-202ENST00000360001 CHD2O14647 1828 aaKnown RBP31.62■■■□□ 2.65
SDF4-202ENST00000360001 WASLO00401 505 aaPredicted RBP31.62■■■□□ 2.65
SDF4-202ENST00000360001 CC2D1BQ5T0F9 858 aaKnown RBP31.61■■■□□ 2.65
SDF4-202ENST00000360001 NPC1L1Q9UHC9 1359 aa31.6■■■□□ 2.65
SDF4-202ENST00000360001 ANKRD36BQ8N2N9 1353 aa31.59■■■□□ 2.65
SDF4-202ENST00000360001 KCNA6P17658 529 aa31.58■■■□□ 2.65
SDF4-202ENST00000360001 MYBBP1AQ9BQG0 1328 aaKnown RBP31.57■■■□□ 2.64
SDF4-202ENST00000360001 NSD3Q9BZ95 1437 aa31.56■■■□□ 2.64
SDF4-202ENST00000360001 MRS2Q9HD23 443 aa31.55■■■□□ 2.64
SDF4-202ENST00000360001 LMTK3Q96Q04 1460 aa31.54■■■□□ 2.64
SDF4-202ENST00000360001 CD163L1Q9NR16 1453 aa31.53■■■□□ 2.64
SDF4-202ENST00000360001 USP32Q8NFA0 1604 aa31.52■■■□□ 2.64
SDF4-202ENST00000360001 A0A1W2PP64 1363 aa31.51■■■□□ 2.63
SDF4-202ENST00000360001 HSPA2P54652 639 aa31.5■■■□□ 2.63
SDF4-202ENST00000360001 CABP1Q9NZU7 370 aa31.5■■■□□ 2.63
SDF4-202ENST00000360001 ATP7BP35670 1465 aa31.48■■■□□ 2.63
SDF4-202ENST00000360001 NUDT16Q96DE0 195 aaKnown RBP31.47■■■□□ 2.63
SDF4-202ENST00000360001 TERF2IPQ9NYB0 399 aa31.47■■■□□ 2.63
SDF4-202ENST00000360001 BRD4O60885 1362 aaPredicted RBP31.47■■■□□ 2.63
SDF4-202ENST00000360001 NWD1Q149M9 1564 aa31.46■■■□□ 2.63
SDF4-202ENST00000360001 NLRP13Q86W25 1043 aa31.45■■■□□ 2.63
SDF4-202ENST00000360001 PRR36Q9H6K5 1346 aa31.45■■■□□ 2.63
SDF4-202ENST00000360001 PPIP5K1Q6PFW1 1433 aa31.45■■■□□ 2.63
SDF4-202ENST00000360001 CCDC61Q9Y6R9 512 aa31.43■■■□□ 2.62
SDF4-202ENST00000360001 CGNL1Q0VF96 1302 aa31.41■■■□□ 2.62
SDF4-202ENST00000360001 HDGFL2Q7Z4V5 671 aaPredicted RBP31.41■■■□□ 2.62
SDF4-202ENST00000360001 TOPAZ1Q8N9V7 1692 aa31.41■■■□□ 2.62
SDF4-202ENST00000360001 NALCNQ8IZF0 1738 aa31.39■■■□□ 2.62
SDF4-202ENST00000360001 CDC42BPGQ6DT37 1551 aa31.38■■■□□ 2.61
SDF4-202ENST00000360001 CPSF1Q10570 1443 aaKnown RBP31.38■■■□□ 2.61
SDF4-202ENST00000360001 CENPBP07199 599 aaPredicted RBP31.38■■■□□ 2.61
SDF4-202ENST00000360001 PPP2R1AP30153 589 aa31.37■■■□□ 2.61
SDF4-202ENST00000360001 STRCQ7RTU9 1775 aa31.37■■■□□ 2.61
SDF4-202ENST00000360001 NSD2O96028 1365 aa31.36■■■□□ 2.61
SDF4-202ENST00000360001 FAM9BQ8IZU0 186 aa31.36■■■□□ 2.61
SDF4-202ENST00000360001 PNISRQ8TF01 805 aaKnown RBP31.34■■■□□ 2.61
SDF4-202ENST00000360001 NUTM2FA1L443 756 aa31.34■■■□□ 2.61
SDF4-202ENST00000360001 FMN2Q9NZ56 1722 aa31.33■■■□□ 2.61
SDF4-202ENST00000360001 AKAP12Q02952 1782 aa31.33■■■□□ 2.61
SDF4-202ENST00000360001 ITSN1Q15811 1721 aa31.32■■■□□ 2.6
SDF4-202ENST00000360001 NKTRP30414 1462 aaKnown RBP31.32■■■□□ 2.6
SDF4-202ENST00000360001 RBM33Q96EV2 1170 aaKnown RBP31.32■■■□□ 2.6
SDF4-202ENST00000360001 ADGRL3Q9HAR2 1447 aa31.31■■■□□ 2.6
SDF4-202ENST00000360001 MON2Q7Z3U7 1717 aa31.31■■■□□ 2.6
SDF4-202ENST00000360001 MORC1Q86VD1 984 aa31.3■■■□□ 2.6
SDF4-202ENST00000360001 PLEKHG3A1L390 1219 aa31.3■■■□□ 2.6
SDF4-202ENST00000360001 ANKARQ7Z5J8 1434 aa31.3■■■□□ 2.6
SDF4-202ENST00000360001 RGPD8O14715 1765 aaPredicted RBP31.29■■■□□ 2.6
SDF4-202ENST00000360001 STRCP1A6NGW2 1772 aa31.28■■■□□ 2.6
SDF4-202ENST00000360001 EDC4Q6P2E9 1401 aaKnown RBP31.28■■■□□ 2.6
SDF4-202ENST00000360001 KIF20BQ96Q89 1820 aa31.28■■■□□ 2.6
SDF4-202ENST00000360001 ANKRD26Q9UPS8 1709 aa31.28■■■□□ 2.6
SDF4-202ENST00000360001 FYB1O15117 783 aa31.27■■■□□ 2.6
SDF4-202ENST00000360001 ZNF692Q9BU19 519 aaPredicted RBP31.25■■■□□ 2.59
SDF4-202ENST00000360001 GGNBP2Q9H3C7 697 aa31.24■■■□□ 2.59
SDF4-202ENST00000360001 ACEP12821 1306 aa31.23■■■□□ 2.59
SDF4-202ENST00000360001 PROSER2Q86WR7 435 aaPredicted RBP31.23■■■□□ 2.59
SDF4-202ENST00000360001 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.21■■■□□ 2.59
SDF4-202ENST00000360001 NRKQ7Z2Y5 1582 aa31.2■■■□□ 2.59
SDF4-202ENST00000360001 HNRNPUQ00839 825 aaKnown RBP eCLIP31.2■■■□□ 2.59
SDF4-202ENST00000360001 TNNT2P45379 298 aaPredicted RBP31.19■■■□□ 2.58
SDF4-202ENST00000360001 POLR3AO14802 1390 aaPredicted RBP31.18■■■□□ 2.58
SDF4-202ENST00000360001 C14orf37Q86TY3 774 aa31.18■■■□□ 2.58
SDF4-202ENST00000360001 USP6P35125 1406 aa31.17■■■□□ 2.58
SDF4-202ENST00000360001 PMFBP1Q8TBY8 1022 aa31.17■■■□□ 2.58
SDF4-202ENST00000360001 NME9Q86XW9 330 aa31.13■■■□□ 2.57
SDF4-202ENST00000360001 TMEM94Q12767 1356 aa31.13■■■□□ 2.57
SDF4-202ENST00000360001 SSH2Q76I76 1423 aa31.13■■■□□ 2.57
SDF4-202ENST00000360001 NCOA3Q9Y6Q9 1424 aa31.13■■■□□ 2.57
SDF4-202ENST00000360001 TTC21BQ7Z4L5 1316 aa31.11■■■□□ 2.57
SDF4-202ENST00000360001 NGDNQ8NEJ9 315 aaKnown RBP31.11■■■□□ 2.57
SDF4-202ENST00000360001 C19orf44Q9H6X5 657 aa31.1■■■□□ 2.57
SDF4-202ENST00000360001 MTHFSP49914 203 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms