RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 WASHC2AQ641Q2 1341 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 NWD1Q149M9 1564 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 CPS1P31327 1500 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 DDX17Q92841 729 aaKnown RBP5.68□□□□□ -1.5
LIG4-201ENST00000356922 SIRT1Q96EB6 747 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 ORAI2Q96SN7 254 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 CDK19Q9BWU1 502 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 PTCH1Q13635 1447 aa5.68□□□□□ -1.5
LIG4-201ENST00000356922 FAM135BQ49AJ0 1406 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 TULP4Q9NRJ4 1543 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 SLC12A5Q9H2X9 1139 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 NALCNQ8IZF0 1738 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 WASLO00401 505 aaPredicted RBP5.67□□□□□ -1.5
LIG4-201ENST00000356922 C19orf44Q9H6X5 657 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 KIF7Q2M1P5 1343 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 DLC1Q96QB1 1528 aa5.67□□□□□ -1.5
LIG4-201ENST00000356922 C14orf37Q86TY3 774 aa5.66□□□□□ -1.5
LIG4-201ENST00000356922 POLR3GLQ9BT43 218 aa5.66□□□□□ -1.5
LIG4-201ENST00000356922 KNDC1Q76NI1 1749 aa5.66□□□□□ -1.5
LIG4-201ENST00000356922 QRICH2Q9H0J4 1663 aa5.66□□□□□ -1.5
LIG4-201ENST00000356922 PMFBP1Q8TBY8 1022 aa5.66□□□□□ -1.5
LIG4-201ENST00000356922 RGPD8O14715 1765 aaPredicted RBP5.66□□□□□ -1.5
LIG4-201ENST00000356922 CABP1Q9NZU7 370 aa5.65□□□□□ -1.5
LIG4-201ENST00000356922 SRPK2P78362 688 aaKnown RBP5.65□□□□□ -1.5
LIG4-201ENST00000356922 CERKQ8TCT0 537 aa5.65□□□□□ -1.5
LIG4-201ENST00000356922 NUDT16Q96DE0 195 aaKnown RBP5.65□□□□□ -1.5
LIG4-201ENST00000356922 NKTRP30414 1462 aaKnown RBP5.65□□□□□ -1.5
LIG4-201ENST00000356922 ADGRL3Q9HAR2 1447 aa5.65□□□□□ -1.51
LIG4-201ENST00000356922 USP32Q8NFA0 1604 aa5.65□□□□□ -1.51
LIG4-201ENST00000356922 XPCQ01831 940 aaPredicted RBP5.65□□□□□ -1.51
LIG4-201ENST00000356922 SLAIN2Q9P270 581 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 CARD14Q9BXL6 1004 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 ZNF316A6NFI3 1004 aaPredicted RBP5.64□□□□□ -1.51
LIG4-201ENST00000356922 FOXO3O43524 673 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 SBNO2Q9Y2G9 1366 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 MST1RQ04912 1400 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 DDX10Q13206 875 aaKnown RBP5.64□□□□□ -1.51
LIG4-201ENST00000356922 ESCO1Q5FWF5 840 aa5.64□□□□□ -1.51
LIG4-201ENST00000356922 ATP7BP35670 1465 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 PIP4K2BP78356 416 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 TMF1P82094 1093 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 BRINP3Q76B58 766 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 EIF3AQ14152 1382 aaKnown RBP5.63□□□□□ -1.51
LIG4-201ENST00000356922 CCDC7Q96M83 1385 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 CD163L1Q9NR16 1453 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 EVC2Q86UK5 1308 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 TMC1Q8TDI8 760 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 ATF3P18847 181 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 CCDC61Q9Y6R9 512 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 C1orf167Q5SNV9 1468 aa5.63□□□□□ -1.51
LIG4-201ENST00000356922 MSH6P52701 1360 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 CNGB1Q14028 1251 aaPredicted RBP5.62□□□□□ -1.51
LIG4-201ENST00000356922 ZRANB1Q9UGI0 708 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 UBAP1LF5GYI3 381 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 PER1O15534 1290 aaPredicted RBP5.62□□□□□ -1.51
LIG4-201ENST00000356922 FBLN1P23142 703 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 PANK3Q9H999 370 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 ACEP12821 1306 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 ADGRB2O60241 1585 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 CADPS2Q86UW7 1296 aa5.62□□□□□ -1.51
LIG4-201ENST00000356922 NCOA3Q9Y6Q9 1424 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 FMN2Q9NZ56 1722 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 PPIP5K1Q6PFW1 1433 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 EP400Q96L91 3159 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 CDC42BPGQ6DT37 1551 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 PLEKHG3A1L390 1219 aa5.61□□□□□ -1.51
LIG4-201ENST00000356922 MYOM1P52179 1685 aa5.6□□□□□ -1.51
LIG4-201ENST00000356922 PLEKHG5O94827 1062 aa5.6□□□□□ -1.51
LIG4-201ENST00000356922 NUTM2GQ5VZR2 741 aa5.6□□□□□ -1.51
LIG4-201ENST00000356922 PHF8Q9UPP1 1060 aa5.6□□□□□ -1.51
LIG4-201ENST00000356922 A0A1W2PP64 1363 aa5.6□□□□□ -1.51
LIG4-201ENST00000356922 SCAF1Q9H7N4 1312 aaKnown RBP5.6□□□□□ -1.51
LIG4-201ENST00000356922 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.59□□□□□ -1.51
LIG4-201ENST00000356922 CPSF1Q10570 1443 aaKnown RBP5.59□□□□□ -1.51
LIG4-201ENST00000356922 DCCP43146 1447 aa5.59□□□□□ -1.51
LIG4-201ENST00000356922 SRCAPQ6ZRS2 3230 aa5.59□□□□□ -1.51
LIG4-201ENST00000356922 NGDNQ8NEJ9 315 aaKnown RBP5.59□□□□□ -1.51
LIG4-201ENST00000356922 POLR3AO14802 1390 aaPredicted RBP5.58□□□□□ -1.52
LIG4-201ENST00000356922 SSH2Q76I76 1423 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 NME9Q86XW9 330 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 CABLES1Q8TDN4 633 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 TOPAZ1Q8N9V7 1692 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 FYB1O15117 783 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 TOM1O60784 492 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 KRT28Q7Z3Y7 464 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 PUS7Q96PZ0 661 aaKnown RBP5.58□□□□□ -1.52
LIG4-201ENST00000356922 ROBO1Q9Y6N7 1651 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 HSPA1LP34931 641 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 PSME1Q06323 249 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 ANKARQ7Z5J8 1434 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 ATAD2Q6PL18 1390 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 AMER1Q5JTC6 1135 aaPredicted RBP5.58□□□□□ -1.52
LIG4-201ENST00000356922 GGNBP2Q9H3C7 697 aa5.58□□□□□ -1.52
LIG4-201ENST00000356922 PAK3O75914 559 aaPredicted RBP5.57□□□□□ -1.52
LIG4-201ENST00000356922 KTN1Q86UP2 1357 aaKnown RBP5.57□□□□□ -1.52
LIG4-201ENST00000356922 SOS2Q07890 1332 aaPredicted RBP5.57□□□□□ -1.52
LIG4-201ENST00000356922 TTC21BQ7Z4L5 1316 aa5.57□□□□□ -1.52
LIG4-201ENST00000356922 CC2D1BQ5T0F9 858 aaKnown RBP5.57□□□□□ -1.52
LIG4-201ENST00000356922 PXDNQ92626 1479 aa5.57□□□□□ -1.52
LIG4-201ENST00000356922 USP6P35125 1406 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms