RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 DDX58O95786 925 aaKnown RBP20.52■□□□□ 0.88
SMARCA4-201ENST00000344626 FAM135AQ9P2D6 1515 aa20.52■□□□□ 0.88
SMARCA4-201ENST00000344626 C9orf78Q9NZ63 289 aaPredicted RBP20.52■□□□□ 0.87
SMARCA4-201ENST00000344626 KRT28Q7Z3Y7 464 aa20.51■□□□□ 0.87
SMARCA4-201ENST00000344626 ZNF518AQ6AHZ1 1483 aa20.51■□□□□ 0.87
SMARCA4-201ENST00000344626 ADGRF5Q8IZF2 1346 aa20.5■□□□□ 0.87
SMARCA4-201ENST00000344626 FBXW7Q969H0 707 aa20.5■□□□□ 0.87
SMARCA4-201ENST00000344626 NAIPQ13075 1403 aa20.5■□□□□ 0.87
SMARCA4-201ENST00000344626 RRS1Q15050 365 aaKnown RBP20.5■□□□□ 0.87
SMARCA4-201ENST00000344626 ZNF530Q6P9A1 599 aaPredicted RBP20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 NUP153P49790 1475 aaKnown RBP20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 LMTK3Q96Q04 1460 aa20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 ATAD2Q6PL18 1390 aa20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 THOC2Q8NI27 1593 aaKnown RBP20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 GPATCH8Q9UKJ3 1502 aaKnown RBP20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 A2MP01023 1474 aa20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 SULT6B1Q6IMI4 303 aa20.49■□□□□ 0.87
SMARCA4-201ENST00000344626 CABP4P57796 275 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 GNAI1P63096 354 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 KCNH5Q8NCM2 988 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 NCOA1Q15788 1441 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 NBPF8Q3BBV2 869 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 UHRF1BP1LA0JNW5 1464 aa20.48■□□□□ 0.87
SMARCA4-201ENST00000344626 TRAPPC8Q9Y2L5 1435 aa20.47■□□□□ 0.87
SMARCA4-201ENST00000344626 FKBP5Q13451 457 aaPredicted RBP20.47■□□□□ 0.87
SMARCA4-201ENST00000344626 TPRNQ4KMQ1 711 aa20.47■□□□□ 0.87
SMARCA4-201ENST00000344626 SPG7Q9UQ90 795 aa20.47■□□□□ 0.87
SMARCA4-201ENST00000344626 ZKSCAN2Q63HK3 967 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 HSCBQ8IWL3 235 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 GAS2L2Q8NHY3 880 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 C8orf37Q96NL8 207 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 ZMYM3Q14202 1370 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 UGGT2Q9NYU1 1516 aa20.46■□□□□ 0.87
SMARCA4-201ENST00000344626 WASHC2AQ641Q2 1341 aa20.45■□□□□ 0.86
SMARCA4-201ENST00000344626 KDM5BQ9UGL1 1544 aa20.44■□□□□ 0.86
SMARCA4-201ENST00000344626 RIC3Q7Z5B4 369 aa20.44■□□□□ 0.86
SMARCA4-201ENST00000344626 CNTLNQ9NXG0 1405 aa20.44■□□□□ 0.86
SMARCA4-201ENST00000344626 PRKAR2BP31323 418 aa20.44■□□□□ 0.86
SMARCA4-201ENST00000344626 VPS37DQ86XT2 251 aa20.43■□□□□ 0.86
SMARCA4-201ENST00000344626 NBR1Q14596 966 aa20.43■□□□□ 0.86
SMARCA4-201ENST00000344626 WASLO00401 505 aaPredicted RBP20.43■□□□□ 0.86
SMARCA4-201ENST00000344626 API5Q9BZZ5 524 aaKnown RBP20.43■□□□□ 0.86
SMARCA4-201ENST00000344626 LRPPRCP42704 1394 aaKnown RBP20.42■□□□□ 0.86
SMARCA4-201ENST00000344626 TRIM6-TRIM34B2RNG4 842 aa20.41■□□□□ 0.86
SMARCA4-201ENST00000344626 CHRNA2Q15822 529 aa20.41■□□□□ 0.86
SMARCA4-201ENST00000344626 TOMM22Q9NS69 142 aa20.4■□□□□ 0.86
SMARCA4-201ENST00000344626 CEP170Q5SW79 1584 aa20.4■□□□□ 0.86
SMARCA4-201ENST00000344626 ABCC10Q5T3U5 1492 aa20.4■□□□□ 0.86
SMARCA4-201ENST00000344626 KIAA0556O60303 1618 aa20.39■□□□□ 0.86
SMARCA4-201ENST00000344626 C19orf44Q9H6X5 657 aa20.39■□□□□ 0.85
SMARCA4-201ENST00000344626 UHRF1BP1Q6BDS2 1440 aa20.38■□□□□ 0.85
SMARCA4-201ENST00000344626 ZBED9Q6R2W3 1325 aa20.38■□□□□ 0.85
SMARCA4-201ENST00000344626 NOS1P29475 1434 aa20.38■□□□□ 0.85
SMARCA4-201ENST00000344626 CTTNBP2Q8WZ74 1663 aa20.37■□□□□ 0.85
SMARCA4-201ENST00000344626 NPHP3Q7Z494 1330 aa20.37■□□□□ 0.85
SMARCA4-201ENST00000344626 BRD4O60885 1362 aaPredicted RBP20.36■□□□□ 0.85
SMARCA4-201ENST00000344626 GOLGA6L4A6NEF3 574 aa20.36■□□□□ 0.85
SMARCA4-201ENST00000344626 EXOC5O00471 708 aa20.36■□□□□ 0.85
SMARCA4-201ENST00000344626 GNL2Q13823 731 aaKnown RBP20.36■□□□□ 0.85
SMARCA4-201ENST00000344626 WDR97A6NE52 1622 aa20.36■□□□□ 0.85
SMARCA4-201ENST00000344626 PTCD1O75127 700 aaKnown RBP20.35■□□□□ 0.85
SMARCA4-201ENST00000344626 LRRFIP1Q32MZ4 808 aaKnown RBP20.35■□□□□ 0.85
SMARCA4-201ENST00000344626 NME9Q86XW9 330 aa20.35■□□□□ 0.85
SMARCA4-201ENST00000344626 SYCP2Q9BX26 1530 aa20.35■□□□□ 0.85
SMARCA4-201ENST00000344626 HMGB2P26583 209 aaKnown RBP20.34■□□□□ 0.85
SMARCA4-201ENST00000344626 KCNA6P17658 529 aa20.34■□□□□ 0.85
SMARCA4-201ENST00000344626 KIF6Q6ZMV9 814 aa20.33■□□□□ 0.85
SMARCA4-201ENST00000344626 PPP2R1AP30153 589 aa20.33■□□□□ 0.84
SMARCA4-201ENST00000344626 ITSN2Q9NZM3 1697 aa20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 DDX19BQ9UMR2 479 aa20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 KIF16BQ96L93 1317 aa20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 USHBP1Q8N6Y0 703 aa20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 HSP90B1P14625 803 aaKnown RBP20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 MPRIPQ6WCQ1 1025 aa20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 NOL10Q9BSC4 688 aaKnown RBP20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 BCL11BQ9C0K0 894 aaPredicted RBP20.32■□□□□ 0.84
SMARCA4-201ENST00000344626 BICDL1Q6ZP65 573 aa20.31■□□□□ 0.84
SMARCA4-201ENST00000344626 PLIN1O60240 522 aa20.31■□□□□ 0.84
SMARCA4-201ENST00000344626 CABLES1Q8TDN4 633 aa20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 ZNF428Q96B54 188 aa20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 C14orf93Q9H972 538 aaKnown RBP20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 DUOX2Q9NRD8 1548 aa20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 TCP11L2Q8N4U5 519 aa20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 PNISRQ8TF01 805 aaKnown RBP20.3■□□□□ 0.84
SMARCA4-201ENST00000344626 LRRC59Q96AG4 307 aaKnown RBP20.29■□□□□ 0.84
SMARCA4-201ENST00000344626 TRIM34Q9BYJ4 488 aa20.29■□□□□ 0.84
SMARCA4-201ENST00000344626 RIMS2Q9UQ26 1411 aa20.29■□□□□ 0.84
SMARCA4-201ENST00000344626 RAD21O60216 631 aa20.28■□□□□ 0.84
SMARCA4-201ENST00000344626 DZIP1LQ8IYY4 767 aaKnown RBP20.28■□□□□ 0.84
SMARCA4-201ENST00000344626 TMOD3Q9NYL9 352 aa20.27■□□□□ 0.84
SMARCA4-201ENST00000344626 ATP10AO60312 1499 aa20.27■□□□□ 0.84
SMARCA4-201ENST00000344626 ACEP12821 1306 aa20.27■□□□□ 0.84
SMARCA4-201ENST00000344626 CCDC30Q5VVM6 783 aa20.26■□□□□ 0.83
SMARCA4-201ENST00000344626 DISP1Q96F81 1524 aa20.26■□□□□ 0.83
SMARCA4-201ENST00000344626 HSP90AB4PQ58FF6 505 aa20.26■□□□□ 0.83
SMARCA4-201ENST00000344626 G3BP1Q13283 466 aaKnown RBP eCLIP20.25■□□□□ 0.832e-7■■□□□ 14.1
SMARCA4-201ENST00000344626 ADAMTS8Q9UP79 889 aa20.25■□□□□ 0.83
SMARCA4-201ENST00000344626 PBRM1Q86U86 1689 aa20.25■□□□□ 0.83
SMARCA4-201ENST00000344626 MYL6BP14649 208 aa20.25■□□□□ 0.83
SMARCA4-201ENST00000344626 HDGFL1Q5TGJ6 251 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms