RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FANCIQ9NVI1 1328 aa13.61□□□□□ -0.23
LIMA1-201ENST00000341247 DUSP27Q5VZP5 1158 aa13.61□□□□□ -0.23
LIMA1-201ENST00000341247 TULP4Q9NRJ4 1543 aa13.61□□□□□ -0.23
LIMA1-201ENST00000341247 DMRT2Q9Y5R5 561 aa13.61□□□□□ -0.23
LIMA1-201ENST00000341247 NPM2Q86SE8 214 aaKnown RBP13.6□□□□□ -0.23
LIMA1-201ENST00000341247 SRPK2P78362 688 aaKnown RBP13.6□□□□□ -0.23
LIMA1-201ENST00000341247 SLC24A1O60721 1099 aa13.59□□□□□ -0.23
LIMA1-201ENST00000341247 MINK1Q8N4C8 1332 aaPredicted RBP13.59□□□□□ -0.23
LIMA1-201ENST00000341247 CLTCQ00610 1675 aaKnown RBP13.58□□□□□ -0.24
LIMA1-201ENST00000341247 RPGRIP1LQ68CZ1 1315 aa13.58□□□□□ -0.24
LIMA1-201ENST00000341247 MYT1Q01538 1121 aa13.57□□□□□ -0.24
LIMA1-201ENST00000341247 SBNO2Q9Y2G9 1366 aa13.57□□□□□ -0.24
LIMA1-201ENST00000341247 MTHFSP49914 203 aa13.57□□□□□ -0.24
LIMA1-201ENST00000341247 SLFN5Q08AF3 891 aa13.56□□□□□ -0.24
LIMA1-201ENST00000341247 POGKQ9P215 609 aa13.56□□□□□ -0.24
LIMA1-201ENST00000341247 EVC2Q86UK5 1308 aa13.56□□□□□ -0.24
LIMA1-201ENST00000341247 BCAR3O75815 825 aa13.56□□□□□ -0.24
LIMA1-201ENST00000341247 NPC1L1Q9UHC9 1359 aa13.55□□□□□ -0.24
LIMA1-201ENST00000341247 ZNF521Q96K83 1311 aa13.55□□□□□ -0.24
LIMA1-201ENST00000341247 PRAM1Q96QH2 718 aa13.54□□□□□ -0.24
LIMA1-201ENST00000341247 GGNBP2Q9H3C7 697 aa13.54□□□□□ -0.24
LIMA1-201ENST00000341247 PTPRMP28827 1452 aa13.54□□□□□ -0.24
LIMA1-201ENST00000341247 SLC52A1Q9NWF4 448 aa13.53□□□□□ -0.24
LIMA1-201ENST00000341247 CGNL1Q0VF96 1302 aa13.53□□□□□ -0.24
LIMA1-201ENST00000341247 INSRP06213 1382 aa13.53□□□□□ -0.24
LIMA1-201ENST00000341247 SHPRHQ149N8 1683 aa13.52□□□□□ -0.25
LIMA1-201ENST00000341247 PAK3O75914 559 aaPredicted RBP13.52□□□□□ -0.25
LIMA1-201ENST00000341247 U2AF1L5P0DN76 240 aaPredicted RBP13.51□□□□□ -0.25
LIMA1-201ENST00000341247 U2AF1Q01081 240 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMA1-201ENST00000341247 ANP32AP39687 249 aaKnown RBP13.51□□□□□ -0.25
LIMA1-201ENST00000341247 WWC1Q8IX03 1113 aa13.51□□□□□ -0.25
LIMA1-201ENST00000341247 TCP11L2Q8N4U5 519 aa13.51□□□□□ -0.25
LIMA1-201ENST00000341247 U2SURPO15042 1029 aaKnown RBP13.5□□□□□ -0.25
LIMA1-201ENST00000341247 ALKQ9UM73 1620 aa13.5□□□□□ -0.25
LIMA1-201ENST00000341247 CANXP27824 592 aaKnown RBP13.5□□□□□ -0.25
LIMA1-201ENST00000341247 PLPPR3Q6T4P5 718 aa13.5□□□□□ -0.25
LIMA1-201ENST00000341247 FRAT1Q92837 279 aaPredicted RBP13.5□□□□□ -0.25
LIMA1-201ENST00000341247 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
LIMA1-201ENST00000341247 WAPLQ7Z5K2 1190 aa13.5□□□□□ -0.25
LIMA1-201ENST00000341247 A2ML1A8K2U0 1454 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 E9PSI1 815 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 CD163L1Q9NR16 1453 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 FBLN1P23142 703 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.49□□□□□ -0.25
LIMA1-201ENST00000341247 CFAP53Q96M91 514 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 ZFYVE9O95405 1425 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 PDE4AP27815 886 aa13.49□□□□□ -0.25
LIMA1-201ENST00000341247 SETD1AO15047 1707 aaKnown RBP13.48□□□□□ -0.25
LIMA1-201ENST00000341247 A0A1W2PP64 1363 aa13.48□□□□□ -0.25
LIMA1-201ENST00000341247 POLR3AO14802 1390 aaPredicted RBP13.48□□□□□ -0.25
LIMA1-201ENST00000341247 PPM1GO15355 546 aaPredicted RBP13.48□□□□□ -0.25
LIMA1-201ENST00000341247 AGLP35573 1532 aa13.48□□□□□ -0.25
LIMA1-201ENST00000341247 YTHDC2Q9H6S0 1430 aaKnown RBP13.48□□□□□ -0.25
LIMA1-201ENST00000341247 REREQ9P2R6 1566 aa13.48□□□□□ -0.25
LIMA1-201ENST00000341247 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.48□□□□□ -0.25
LIMA1-201ENST00000341247 TCERG1O14776 1098 aaKnown RBP13.47□□□□□ -0.25
LIMA1-201ENST00000341247 RUNDC1Q96C34 613 aa13.47□□□□□ -0.25
LIMA1-201ENST00000341247 NOP58Q9Y2X3 529 aaKnown RBP13.47□□□□□ -0.25
LIMA1-201ENST00000341247 SPATA31D1Q6ZQQ2 1576 aa13.47□□□□□ -0.25
LIMA1-201ENST00000341247 RGS3P49796 1198 aa13.47□□□□□ -0.25
LIMA1-201ENST00000341247 NBR1Q14596 966 aa13.47□□□□□ -0.25
LIMA1-201ENST00000341247 NRXN3Q9Y4C0 1643 aa13.47□□□□□ -0.25
LIMA1-201ENST00000341247 ARHGEF40Q8TER5 1519 aa13.46□□□□□ -0.25
LIMA1-201ENST00000341247 PANK1Q8TE04 598 aa13.46□□□□□ -0.25
LIMA1-201ENST00000341247 CABP1Q9NZU7 370 aa13.46□□□□□ -0.25
LIMA1-201ENST00000341247 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
LIMA1-201ENST00000341247 TRMT2AQ8IZ69 625 aaKnown RBP13.46□□□□□ -0.25
LIMA1-201ENST00000341247 CDK19Q9BWU1 502 aa13.46□□□□□ -0.25
LIMA1-201ENST00000341247 ANKRD36BQ8N2N9 1353 aa13.45□□□□□ -0.26
LIMA1-201ENST00000341247 ESF1Q9H501 851 aaKnown RBP13.45□□□□□ -0.26
LIMA1-201ENST00000341247 NKTRP30414 1462 aaKnown RBP13.45□□□□□ -0.26
LIMA1-201ENST00000341247 COG6Q9Y2V7 657 aa13.45□□□□□ -0.26
LIMA1-201ENST00000341247 METP08581 1390 aa13.44□□□□□ -0.26
LIMA1-201ENST00000341247 ZMYM3Q14202 1370 aa13.44□□□□□ -0.26
LIMA1-201ENST00000341247 TNNQ9UQP3 1299 aa13.44□□□□□ -0.26
LIMA1-201ENST00000341247 CLUAP1Q96AJ1 413 aa13.43□□□□□ -0.26
LIMA1-201ENST00000341247 NLRP1Q9C000 1473 aa13.43□□□□□ -0.26
LIMA1-201ENST00000341247 CEBPAP49715 358 aaPredicted RBP13.43□□□□□ -0.26
LIMA1-201ENST00000341247 IPO9Q96P70 1041 aaKnown RBP13.43□□□□□ -0.26
LIMA1-201ENST00000341247 FYB1O15117 783 aa13.43□□□□□ -0.26
LIMA1-201ENST00000341247 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
LIMA1-201ENST00000341247 ZBTB47Q9UFB7 747 aaPredicted RBP13.42□□□□□ -0.26
LIMA1-201ENST00000341247 BACH2Q9BYV9 841 aa13.42□□□□□ -0.26
LIMA1-201ENST00000341247 RIMS2Q9UQ26 1411 aa13.42□□□□□ -0.26
LIMA1-201ENST00000341247 USP32Q8NFA0 1604 aa13.41□□□□□ -0.26
LIMA1-201ENST00000341247 TSR2Q969E8 191 aaKnown RBP13.41□□□□□ -0.26
LIMA1-201ENST00000341247 TXNDC2Q86VQ3 553 aa13.41□□□□□ -0.26
LIMA1-201ENST00000341247 HDGFL2Q7Z4V5 671 aaPredicted RBP13.4□□□□□ -0.26
LIMA1-201ENST00000341247 CENPQQ7L2Z9 268 aaPredicted RBP13.4□□□□□ -0.26
LIMA1-201ENST00000341247 KDM2BQ8NHM5 1336 aa13.4□□□□□ -0.27
LIMA1-201ENST00000341247 NUTM2FA1L443 756 aa13.39□□□□□ -0.27
LIMA1-201ENST00000341247 IQSEC2Q5JU85 1478 aa13.39□□□□□ -0.27
LIMA1-201ENST00000341247 ABCC11Q96J66 1382 aa13.38□□□□□ -0.27
LIMA1-201ENST00000341247 IGHDP01880 384 aa13.38□□□□□ -0.27
LIMA1-201ENST00000341247 ZRANB1Q9UGI0 708 aa13.38□□□□□ -0.27
LIMA1-201ENST00000341247 ATAD2Q6PL18 1390 aa13.37□□□□□ -0.27
LIMA1-201ENST00000341247 MS4A1P11836 297 aa13.37□□□□□ -0.27
LIMA1-201ENST00000341247 RARSP54136 660 aaKnown RBP13.37□□□□□ -0.27
LIMA1-201ENST00000341247 MAPK8IP3Q9UPT6 1336 aa13.37□□□□□ -0.27
LIMA1-201ENST00000341247 RLBP1P12271 317 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms