RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 C1orf167Q5SNV9 1468 aa22.47■■□□□ 1.19
VAPA-201ENST00000340541 RXRBP28702 533 aa22.45■■□□□ 1.18
VAPA-201ENST00000340541 TMEM132EQ6IEE7 984 aa22.45■■□□□ 1.18
VAPA-201ENST00000340541 DCAF11Q8TEB1 546 aa22.45■■□□□ 1.18
VAPA-201ENST00000340541 LRPPRCP42704 1394 aaKnown RBP22.45■■□□□ 1.18
VAPA-201ENST00000340541 KNDC1Q76NI1 1749 aa22.45■■□□□ 1.18
VAPA-201ENST00000340541 CFAP70Q5T0N1 1121 aa22.44■■□□□ 1.18
VAPA-201ENST00000340541 YTHDC2Q9H6S0 1430 aaKnown RBP22.42■■□□□ 1.18
VAPA-201ENST00000340541 PNPLA6Q8IY17 1366 aa22.42■■□□□ 1.18
VAPA-201ENST00000340541 ABCC11Q96J66 1382 aa22.42■■□□□ 1.18
VAPA-201ENST00000340541 STAC3Q96MF2 364 aa22.42■■□□□ 1.18
VAPA-201ENST00000340541 KDM2AQ9Y2K7 1162 aa22.42■■□□□ 1.18
VAPA-201ENST00000340541 CDK12Q9NYV4 1490 aaPredicted RBP22.41■■□□□ 1.18
VAPA-201ENST00000340541 DDX17Q92841 729 aaKnown RBP22.41■■□□□ 1.18
VAPA-201ENST00000340541 ADGRB1O14514 1584 aa22.41■■□□□ 1.18
VAPA-201ENST00000340541 AFF2P51816 1311 aa22.4■■□□□ 1.18
VAPA-201ENST00000340541 SOS2Q07890 1332 aaPredicted RBP22.4■■□□□ 1.18
VAPA-201ENST00000340541 STK26Q9P289 416 aa22.4■■□□□ 1.18
VAPA-201ENST00000340541 ORAI2Q96SN7 254 aa22.39■■□□□ 1.17
VAPA-201ENST00000340541 SIN3AQ96ST3 1273 aa22.37■■□□□ 1.17
VAPA-201ENST00000340541 PLEKHH1Q9ULM0 1364 aa22.36■■□□□ 1.17
VAPA-201ENST00000340541 WAPLQ7Z5K2 1190 aa22.35■■□□□ 1.17
VAPA-201ENST00000340541 UPF1Q92900 1129 aaKnown RBP eCLIP22.35■■□□□ 1.17
VAPA-201ENST00000340541 QTRT2Q9H974 415 aaKnown RBP22.35■■□□□ 1.17
VAPA-201ENST00000340541 SIRT1Q96EB6 747 aa22.34■■□□□ 1.17
VAPA-201ENST00000340541 C8orf37Q96NL8 207 aa22.34■■□□□ 1.17
VAPA-201ENST00000340541 RBM6P78332 1123 aaKnown RBP22.33■■□□□ 1.17
VAPA-201ENST00000340541 CDC42BPGQ6DT37 1551 aa22.33■■□□□ 1.16
VAPA-201ENST00000340541 DLC1Q96QB1 1528 aa22.32■■□□□ 1.16
VAPA-201ENST00000340541 NGLY1Q96IV0 654 aa22.32■■□□□ 1.16
VAPA-201ENST00000340541 NPHP3Q7Z494 1330 aa22.31■■□□□ 1.16
VAPA-201ENST00000340541 ESCO1Q5FWF5 840 aa22.31■■□□□ 1.16
VAPA-201ENST00000340541 KIAA1210Q9ULL0 1709 aa22.31■■□□□ 1.16
VAPA-201ENST00000340541 L3MBTL2Q969R5 705 aa22.3■■□□□ 1.16
VAPA-201ENST00000340541 ADAMTS2O95450 1211 aa22.28■■□□□ 1.16
VAPA-201ENST00000340541 NEUROD1Q13562 356 aa22.28■■□□□ 1.16
VAPA-201ENST00000340541 FNBP4Q8N3X1 1017 aaPredicted RBP22.27■■□□□ 1.16
VAPA-201ENST00000340541 COL22A1Q8NFW1 1626 aaPredicted RBP22.25■■□□□ 1.15
VAPA-201ENST00000340541 PRAM1Q96QH2 718 aa22.25■■□□□ 1.15
VAPA-201ENST00000340541 FMN2Q9NZ56 1722 aa22.24■■□□□ 1.15
VAPA-201ENST00000340541 FOXO3O43524 673 aa22.24■■□□□ 1.15
VAPA-201ENST00000340541 USP21Q9UK80 565 aa22.24■■□□□ 1.15
VAPA-201ENST00000340541 TRAK1Q9UPV9 953 aa22.24■■□□□ 1.15
VAPA-201ENST00000340541 ARHGEF28Q8N1W1 1705 aaKnown RBP22.23■■□□□ 1.15
VAPA-201ENST00000340541 TRPC5Q9UL62 973 aaPredicted RBP22.23■■□□□ 1.15
VAPA-201ENST00000340541 PXDNQ92626 1479 aa22.22■■□□□ 1.15
VAPA-201ENST00000340541 NBPF1Q3BBV0 1214 aa22.21■■□□□ 1.15
VAPA-201ENST00000340541 PCGF6Q9BYE7 350 aa22.21■■□□□ 1.15
VAPA-201ENST00000340541 ADGRB2O60241 1585 aa22.21■■□□□ 1.15
VAPA-201ENST00000340541 SAFB2Q14151 953 aaKnown RBP eCLIP22.2■■□□□ 1.14
VAPA-201ENST00000340541 RGS12O14924 1447 aa22.2■■□□□ 1.14
VAPA-201ENST00000340541 POGKQ9P215 609 aa22.19■■□□□ 1.14
VAPA-201ENST00000340541 TRPM1Q7Z4N2 1603 aa22.18■■□□□ 1.14
VAPA-201ENST00000340541 NUTM2FA1L443 756 aa22.16■■□□□ 1.14
VAPA-201ENST00000340541 ATRNO75882 1429 aa22.15■■□□□ 1.14
VAPA-201ENST00000340541 SPATA31A3Q5VYP0 1347 aa22.15■■□□□ 1.14
VAPA-201ENST00000340541 RGPD8O14715 1765 aaPredicted RBP22.15■■□□□ 1.14
VAPA-201ENST00000340541 XPCQ01831 940 aaPredicted RBP22.14■■□□□ 1.13
VAPA-201ENST00000340541 KIF1AQ12756 1690 aa22.14■■□□□ 1.13
VAPA-201ENST00000340541 USP32Q8NFA0 1604 aa22.13■■□□□ 1.13
VAPA-201ENST00000340541 PSME1Q06323 249 aa22.13■■□□□ 1.13
VAPA-201ENST00000340541 NBPF8Q3BBV2 869 aa22.13■■□□□ 1.13
VAPA-201ENST00000340541 KRT28Q7Z3Y7 464 aa22.13■■□□□ 1.13
VAPA-201ENST00000340541 ATAD2Q6PL18 1390 aa22.12■■□□□ 1.13
VAPA-201ENST00000340541 MINK1Q8N4C8 1332 aaPredicted RBP22.12■■□□□ 1.13
VAPA-201ENST00000340541 BCL9LQ86UU0 1499 aa22.12■■□□□ 1.13
VAPA-201ENST00000340541 TONSLQ96HA7 1378 aa22.12■■□□□ 1.13
VAPA-201ENST00000340541 MARF1Q9Y4F3 1742 aaKnown RBP22.11■■□□□ 1.13
VAPA-201ENST00000340541 HIRIP3Q9BW71 556 aaPredicted RBP22.11■■□□□ 1.13
VAPA-201ENST00000340541 PHF8Q9UPP1 1060 aa22.11■■□□□ 1.13
VAPA-201ENST00000340541 ANKARQ7Z5J8 1434 aa22.09■■□□□ 1.13
VAPA-201ENST00000340541 GJD4Q96KN9 370 aaPredicted RBP22.08■■□□□ 1.13
VAPA-201ENST00000340541 WASLO00401 505 aaPredicted RBP22.07■■□□□ 1.12
VAPA-201ENST00000340541 CCDC125Q86Z20 511 aa22.07■■□□□ 1.12
VAPA-201ENST00000340541 UNC5CLQ8IV45 518 aa22.07■■□□□ 1.12
VAPA-201ENST00000340541 TULP4Q9NRJ4 1543 aa22.06■■□□□ 1.12
VAPA-201ENST00000340541 SBNO1A3KN83 1393 aa22.06■■□□□ 1.12
VAPA-201ENST00000340541 GPRASP1Q5JY77 1395 aa22.06■■□□□ 1.12
VAPA-201ENST00000340541 PRR36Q9H6K5 1346 aa22.06■■□□□ 1.12
VAPA-201ENST00000340541 ROCK2O75116 1388 aaKnown RBP22.05■■□□□ 1.12
VAPA-201ENST00000340541 SLIT2O94813 1529 aa22.04■■□□□ 1.12
VAPA-201ENST00000340541 TNS3Q68CZ2 1445 aa22.04■■□□□ 1.12
VAPA-201ENST00000340541 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.03■■□□□ 1.12
VAPA-201ENST00000340541 EIF3AQ14152 1382 aaKnown RBP22.03■■□□□ 1.12
VAPA-201ENST00000340541 QRICH2Q9H0J4 1663 aa22.03■■□□□ 1.12
VAPA-201ENST00000340541 CENPJQ9HC77 1338 aaPredicted RBP22.03■■□□□ 1.12
VAPA-201ENST00000340541 RALGAPBQ86X10 1494 aa22.03■■□□□ 1.12
VAPA-201ENST00000340541 ARHGEF10O15013 1369 aa22.02■■□□□ 1.12
VAPA-201ENST00000340541 CLSPNQ9HAW4 1339 aa22.02■■□□□ 1.12
VAPA-201ENST00000340541 ATP7BP35670 1465 aa22.02■■□□□ 1.12
VAPA-201ENST00000340541 HAP1P54257 671 aaPredicted RBP22■■□□□ 1.11
VAPA-201ENST00000340541 CDK19Q9BWU1 502 aa21.99■■□□□ 1.11
VAPA-201ENST00000340541 TOPAZ1Q8N9V7 1692 aa21.98■■□□□ 1.11
VAPA-201ENST00000340541 ITSN1Q15811 1721 aa21.97■■□□□ 1.11
VAPA-201ENST00000340541 PMFBP1Q8TBY8 1022 aa21.97■■□□□ 1.11
VAPA-201ENST00000340541 VPS72Q15906 364 aa21.96■■□□□ 1.11
VAPA-201ENST00000340541 NUDT16Q96DE0 195 aaKnown RBP21.96■■□□□ 1.11
VAPA-201ENST00000340541 ONECUT3O60422 494 aaPredicted RBP21.95■■□□□ 1.1
VAPA-201ENST00000340541 LMOD2Q6P5Q4 547 aa21.95■■□□□ 1.1
VAPA-201ENST00000340541 CABLES1Q8TDN4 633 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms