RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PER1O15534 1290 aaPredicted RBP5.69□□□□□ -1.5
MCF2-201ENST00000338585 ADAMTS13Q76LX8 1427 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 HDGFP51858 240 aaKnown RBP5.69□□□□□ -1.5
MCF2-201ENST00000338585 CDCA8Q53HL2 280 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 WAPLQ7Z5K2 1190 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 SLC26A8Q96RN1 970 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 SLIT1O75093 1534 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 TULP4Q9NRJ4 1543 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 MINK1Q8N4C8 1332 aaPredicted RBP5.68□□□□□ -1.5
MCF2-201ENST00000338585 LRPPRCP42704 1394 aaKnown RBP5.68□□□□□ -1.5
MCF2-201ENST00000338585 PLEKHG1Q9ULL1 1385 aa5.68□□□□□ -1.5
MCF2-201ENST00000338585 PLEKHH1Q9ULM0 1364 aa5.68□□□□□ -1.5
MCF2-201ENST00000338585 THEMISQ8N1K5 641 aaPredicted RBP5.68□□□□□ -1.5
MCF2-201ENST00000338585 ZNF219Q9P2Y4 722 aaPredicted RBP5.68□□□□□ -1.5
MCF2-201ENST00000338585 POGKQ9P215 609 aa5.68□□□□□ -1.5
MCF2-201ENST00000338585 EID1Q9Y6B2 187 aa5.68□□□□□ -1.5
MCF2-201ENST00000338585 U3KPZ7 1027 aaPredicted RBP5.68□□□□□ -1.5
MCF2-201ENST00000338585 CABP2Q9NPB3 220 aa5.67□□□□□ -1.5
MCF2-201ENST00000338585 ABCC11Q96J66 1382 aa5.67□□□□□ -1.5
MCF2-201ENST00000338585 CC2D1BQ5T0F9 858 aaKnown RBP5.67□□□□□ -1.5
MCF2-201ENST00000338585 MED14O60244 1454 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 SLC12A5Q9H2X9 1139 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 DLC1Q96QB1 1528 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 EVC2Q86UK5 1308 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 ZNF142P52746 1687 aaPredicted RBP5.66□□□□□ -1.5
MCF2-201ENST00000338585 PTPRUQ92729 1446 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 TMC1Q8TDI8 760 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 CARD14Q9BXL6 1004 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 MRS2Q9HD23 443 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 ROBO2Q9HCK4 1378 aa5.66□□□□□ -1.5
MCF2-201ENST00000338585 SRPK2P78362 688 aaKnown RBP5.66□□□□□ -1.5
MCF2-201ENST00000338585 KTN1Q86UP2 1357 aaKnown RBP5.65□□□□□ -1.5
MCF2-201ENST00000338585 TECPR2O15040 1411 aa5.65□□□□□ -1.5
MCF2-201ENST00000338585 SETD1BQ9UPS6 1966 aaKnown RBP5.65□□□□□ -1.5
MCF2-201ENST00000338585 AMER1Q5JTC6 1135 aaPredicted RBP5.65□□□□□ -1.5
MCF2-201ENST00000338585 KNSTRNQ9Y448 316 aa5.65□□□□□ -1.5
MCF2-201ENST00000338585 PARD3Q8TEW0 1356 aa5.65□□□□□ -1.5
MCF2-201ENST00000338585 KNDC1Q76NI1 1749 aa5.65□□□□□ -1.51
MCF2-201ENST00000338585 CDK19Q9BWU1 502 aa5.65□□□□□ -1.51
MCF2-201ENST00000338585 TBX22Q9Y458 520 aa5.65□□□□□ -1.51
MCF2-201ENST00000338585 CPS1P31327 1500 aa5.65□□□□□ -1.51
MCF2-201ENST00000338585 CENPBP07199 599 aaPredicted RBP5.64□□□□□ -1.51
MCF2-201ENST00000338585 RALBP1Q15311 655 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 ANKLE2Q86XL3 938 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 PCDH10Q9P2E7 1040 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 FAM135BQ49AJ0 1406 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 MYBBP1AQ9BQG0 1328 aaKnown RBP5.64□□□□□ -1.51
MCF2-201ENST00000338585 KDM4FA0A1W2PPD8 638 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 FAM9BQ8IZU0 186 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 AMOTL2Q9Y2J4 779 aa5.64□□□□□ -1.51
MCF2-201ENST00000338585 NSD3Q9BZ95 1437 aa5.63□□□□□ -1.51
MCF2-201ENST00000338585 PUS7Q96PZ0 661 aaKnown RBP5.63□□□□□ -1.51
MCF2-201ENST00000338585 NCKAP5LQ9HCH0 1330 aa5.63□□□□□ -1.51
MCF2-201ENST00000338585 PIP4P2Q8N4L2 257 aa5.63□□□□□ -1.51
MCF2-201ENST00000338585 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.62□□□□□ -1.51
MCF2-201ENST00000338585 WASLO00401 505 aaPredicted RBP5.62□□□□□ -1.51
MCF2-201ENST00000338585 KCNA6P17658 529 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 SIRT1Q96EB6 747 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 DIP2AQ14689 1571 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 A0A1W2PP64 1363 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 ATAD2Q6PL18 1390 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 ANKRD36BQ8N2N9 1353 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 CABP1Q9NZU7 370 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 CD163L1Q9NR16 1453 aa5.62□□□□□ -1.51
MCF2-201ENST00000338585 XRN1Q8IZH2 1706 aaKnown RBP5.62□□□□□ -1.51
MCF2-201ENST00000338585 NUTM2FA1L443 756 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 NLRP13Q86W25 1043 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 NPHP4O75161 1426 aaPredicted RBP5.61□□□□□ -1.51
MCF2-201ENST00000338585 BRD4O60885 1362 aaPredicted RBP5.61□□□□□ -1.51
MCF2-201ENST00000338585 NPC1L1Q9UHC9 1359 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 PRR36Q9H6K5 1346 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 SENP3-EIF4A1A0A087X0R7 540 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 PPP2R1AP30153 589 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 HSPA2P54652 639 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 HNRNPUQ00839 825 aaKnown RBP eCLIP5.61□□□□□ -1.51
MCF2-201ENST00000338585 PNISRQ8TF01 805 aaKnown RBP5.61□□□□□ -1.51
MCF2-201ENST00000338585 RBM33Q96EV2 1170 aaKnown RBP5.61□□□□□ -1.51
MCF2-201ENST00000338585 PTCH1Q13635 1447 aa5.61□□□□□ -1.51
MCF2-201ENST00000338585 NINLQ9Y2I6 1382 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 NUDT16Q96DE0 195 aaKnown RBP5.6□□□□□ -1.51
MCF2-201ENST00000338585 ATP7BP35670 1465 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 ADGRB2O60241 1585 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 PPIP5K1Q6PFW1 1433 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 TNNT2P45379 298 aaPredicted RBP5.6□□□□□ -1.51
MCF2-201ENST00000338585 TERF2IPQ9NYB0 399 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 PIK3R4Q99570 1358 aa5.6□□□□□ -1.51
MCF2-201ENST00000338585 CHD2O14647 1828 aaKnown RBP5.59□□□□□ -1.51
MCF2-201ENST00000338585 ABCB7O75027 752 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 AKT1S1Q96B36 256 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 USP32Q8NFA0 1604 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 CGNL1Q0VF96 1302 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 HDGFL2Q7Z4V5 671 aaPredicted RBP5.59□□□□□ -1.51
MCF2-201ENST00000338585 MORC1Q86VD1 984 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 GGNBP2Q9H3C7 697 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 CCDC61Q9Y6R9 512 aa5.59□□□□□ -1.51
MCF2-201ENST00000338585 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.58□□□□□ -1.52
MCF2-201ENST00000338585 CPSF1Q10570 1443 aaKnown RBP5.58□□□□□ -1.52
MCF2-201ENST00000338585 NKTRP30414 1462 aaKnown RBP5.58□□□□□ -1.52
MCF2-201ENST00000338585 LMTK3Q96Q04 1460 aa5.58□□□□□ -1.52
MCF2-201ENST00000338585 FYB1O15117 783 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms