RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 ABCA9Q8IUA7 1624 aa17.43■□□□□ 0.38
SYNE3-201ENST00000334258 MCM4P33991 863 aa17.43■□□□□ 0.38
SYNE3-201ENST00000334258 PDE4CQ08493 712 aa17.43■□□□□ 0.38
SYNE3-201ENST00000334258 FBXO31Q5XUX0 539 aaPredicted RBP17.42■□□□□ 0.38
SYNE3-201ENST00000334258 PCDHB15Q9Y5E8 787 aa17.42■□□□□ 0.38
SYNE3-201ENST00000334258 AEBP2Q6ZN18 517 aaPredicted RBP17.42■□□□□ 0.38
SYNE3-201ENST00000334258 WWC1Q8IX03 1113 aa17.42■□□□□ 0.38
SYNE3-201ENST00000334258 YEATS2Q9ULM3 1422 aa17.41■□□□□ 0.38
SYNE3-201ENST00000334258 MFAP1P55081 439 aaKnown RBP17.41■□□□□ 0.38
SYNE3-201ENST00000334258 TSPOAP1O95153 1857 aa17.41■□□□□ 0.38
SYNE3-201ENST00000334258 RWDD1Q9H446 243 aaPredicted RBP17.41■□□□□ 0.38
SYNE3-201ENST00000334258 TRAK2O60296 914 aa17.4■□□□□ 0.38
SYNE3-201ENST00000334258 MAST1Q9Y2H9 1570 aa17.4■□□□□ 0.38
SYNE3-201ENST00000334258 TNNQ9UQP3 1299 aa17.39■□□□□ 0.38
SYNE3-201ENST00000334258 PIK3C2GO75747 1445 aa17.39■□□□□ 0.37
SYNE3-201ENST00000334258 PLXNC1O60486 1568 aa17.39■□□□□ 0.37
SYNE3-201ENST00000334258 HSP90AA1P07900 732 aaKnown RBP17.39■□□□□ 0.37
SYNE3-201ENST00000334258 TRAK1Q9UPV9 953 aa17.39■□□□□ 0.37
SYNE3-201ENST00000334258 ZNF518AQ6AHZ1 1483 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 HSP90AA2PQ14568 343 aaPredicted RBP17.38■□□□□ 0.37
SYNE3-201ENST00000334258 RTEL1-TNFRSF6BF6WH68 1400 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 RLBP1P12271 317 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 FGD1P98174 961 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 ATP10AO60312 1499 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 AAMPQ13685 434 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 NGEFQ8N5V2 710 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 CHMP5Q9NZZ3 219 aa17.38■□□□□ 0.37
SYNE3-201ENST00000334258 ASXL1Q8IXJ9 1541 aa17.37■□□□□ 0.37
SYNE3-201ENST00000334258 RARSP54136 660 aaKnown RBP17.37■□□□□ 0.37
SYNE3-201ENST00000334258 MYH16Q9H6N6 1097 aa17.37■□□□□ 0.37
SYNE3-201ENST00000334258 C22orf23Q9BZE7 217 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 STK26Q9P289 416 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 UNC13BO14795 1591 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 NINLQ9Y2I6 1382 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 RIMBP3CA6NJZ7 1639 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 RIMBP3BA6NNM3 1639 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 RIMBP3Q9UFD9 1639 aa17.36■□□□□ 0.37
SYNE3-201ENST00000334258 POGZQ7Z3K3 1410 aa17.35■□□□□ 0.37
SYNE3-201ENST00000334258 FTSJ3Q8IY81 847 aaKnown RBP17.35■□□□□ 0.37
SYNE3-201ENST00000334258 CLCN1P35523 988 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 FSD2A1L4K1 749 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 TRHP20396 242 aaPredicted RBP17.34■□□□□ 0.37
SYNE3-201ENST00000334258 MRE11P49959 708 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 HSCBQ8IWL3 235 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 KIDINS220Q9ULH0 1771 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 IQGAP3Q86VI3 1631 aa17.34■□□□□ 0.37
SYNE3-201ENST00000334258 EIF2AK4Q9P2K8 1649 aaKnown RBP17.34■□□□□ 0.37
SYNE3-201ENST00000334258 TRIM44Q96DX7 344 aaPredicted RBP17.34■□□□□ 0.37
SYNE3-201ENST00000334258 TCP11L2Q8N4U5 519 aa17.33■□□□□ 0.36
SYNE3-201ENST00000334258 MORC1Q86VD1 984 aa17.32■□□□□ 0.36
SYNE3-201ENST00000334258 STAG3Q9UJ98 1225 aa17.32■□□□□ 0.36
SYNE3-201ENST00000334258 IDI1Q13907 227 aa17.31■□□□□ 0.36
SYNE3-201ENST00000334258 CARD14Q9BXL6 1004 aa17.31■□□□□ 0.36
SYNE3-201ENST00000334258 BCL11BQ9C0K0 894 aaPredicted RBP17.31■□□□□ 0.36
SYNE3-201ENST00000334258 NLRP1Q9C000 1473 aa17.3■□□□□ 0.36
SYNE3-201ENST00000334258 RUNDC1Q96C34 613 aa17.3■□□□□ 0.36
SYNE3-201ENST00000334258 GRPEL1Q9HAV7 217 aa17.3■□□□□ 0.36
SYNE3-201ENST00000334258 INO80Q9ULG1 1556 aaPredicted RBP17.29■□□□□ 0.36
SYNE3-201ENST00000334258 LAMC1P11047 1609 aa17.29■□□□□ 0.36
SYNE3-201ENST00000334258 NPC1L1Q9UHC9 1359 aa17.29■□□□□ 0.36
SYNE3-201ENST00000334258 SCAF11Q99590 1463 aaKnown RBP17.29■□□□□ 0.36
SYNE3-201ENST00000334258 DDX11L8A8MPP1 907 aa17.29■□□□□ 0.36
SYNE3-201ENST00000334258 NPATQ14207 1427 aa17.28■□□□□ 0.36
SYNE3-201ENST00000334258 ESPNB1AK53 854 aa17.28■□□□□ 0.36
SYNE3-201ENST00000334258 ARAP3Q8WWN8 1544 aa17.28■□□□□ 0.36
SYNE3-201ENST00000334258 CLTCL1P53675 1640 aa17.26■□□□□ 0.35
SYNE3-201ENST00000334258 NOS1P29475 1434 aa17.26■□□□□ 0.35
SYNE3-201ENST00000334258 MVPQ14764 893 aaKnown RBP17.26■□□□□ 0.35
SYNE3-201ENST00000334258 ZKSCAN2Q63HK3 967 aa17.26■□□□□ 0.35
SYNE3-201ENST00000334258 DZIP1LQ8IYY4 767 aaKnown RBP17.26■□□□□ 0.35
SYNE3-201ENST00000334258 ITPRIPQ8IWB1 547 aa17.25■□□□□ 0.35
SYNE3-201ENST00000334258 RRP9O43818 475 aaKnown RBP17.25■□□□□ 0.35
SYNE3-201ENST00000334258 HSP90AB1P08238 724 aaKnown RBP17.25■□□□□ 0.35
SYNE3-201ENST00000334258 PDIA4P13667 645 aaKnown RBP17.24■□□□□ 0.35
SYNE3-201ENST00000334258 SMC4Q9NTJ3 1288 aa17.24■□□□□ 0.35
SYNE3-201ENST00000334258 WDR63Q8IWG1 891 aa17.23■□□□□ 0.35
SYNE3-201ENST00000334258 FOXD4L1Q9NU39 408 aa17.23■□□□□ 0.35
SYNE3-201ENST00000334258 SYNMO15061 1565 aa17.23■□□□□ 0.35
SYNE3-201ENST00000334258 CEP152O94986 1710 aa17.23■□□□□ 0.35
SYNE3-201ENST00000334258 U2AF1L5P0DN76 240 aaPredicted RBP17.23■□□□□ 0.35
SYNE3-201ENST00000334258 U2AF1Q01081 240 aaKnown RBP eCLIP17.23■□□□□ 0.35
SYNE3-201ENST00000334258 CFAP53Q96M91 514 aa17.23■□□□□ 0.35
SYNE3-201ENST00000334258 FRMPD1Q5SYB0 1578 aa17.22■□□□□ 0.35
SYNE3-201ENST00000334258 MTHFSP49914 203 aa17.22■□□□□ 0.35
SYNE3-201ENST00000334258 ABCA6Q8N139 1617 aa17.22■□□□□ 0.35
SYNE3-201ENST00000334258 MROH1Q8NDA8 1641 aa17.21■□□□□ 0.35
SYNE3-201ENST00000334258 STAC3Q96MF2 364 aa17.21■□□□□ 0.35
SYNE3-201ENST00000334258 GBP4Q96PP9 640 aa17.21■□□□□ 0.35
SYNE3-201ENST00000334258 ESF1Q9H501 851 aaKnown RBP17.21■□□□□ 0.35
SYNE3-201ENST00000334258 PTPRTO14522 1441 aa17.21■□□□□ 0.35
SYNE3-201ENST00000334258 CEBPAP49715 358 aaPredicted RBP17.21■□□□□ 0.35
SYNE3-201ENST00000334258 POLR3AO14802 1390 aaPredicted RBP17.21■□□□□ 0.34
SYNE3-201ENST00000334258 TSR2Q969E8 191 aaKnown RBP17.2■□□□□ 0.34
SYNE3-201ENST00000334258 MLH3Q9UHC1 1453 aa17.2■□□□□ 0.34
SYNE3-201ENST00000334258 SLC12A5Q9H2X9 1139 aa17.2■□□□□ 0.34
SYNE3-201ENST00000334258 TNPO1Q92973 898 aaKnown RBP17.19■□□□□ 0.34
SYNE3-201ENST00000334258 HECW2Q9P2P5 1572 aa17.19■□□□□ 0.34
SYNE3-201ENST00000334258 PPRC1Q5VV67 1664 aaKnown RBP17.19■□□□□ 0.34
SYNE3-201ENST00000334258 ZMYM3Q14202 1370 aa17.19■□□□□ 0.34
SYNE3-201ENST00000334258 ERBB4Q15303 1308 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms