RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CBX1P83916 185 aa14.98□□□□□ -0.01
SHMT2-201ENST00000328923 MAP3K4Q9Y6R4 1608 aa14.98□□□□□ -0.01
SHMT2-201ENST00000328923 NUP155O75694 1391 aa14.98□□□□□ -0.01
SHMT2-201ENST00000328923 PKD2Q13563 968 aa14.97□□□□□ -0.01
SHMT2-201ENST00000328923 SPRYD3Q8NCJ5 442 aa14.97□□□□□ -0.01
SHMT2-201ENST00000328923 CGNQ9P2M7 1197 aaKnown RBP14.97□□□□□ -0.01
SHMT2-201ENST00000328923 CENPQQ7L2Z9 268 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-201ENST00000328923 POLR3GLQ9BT43 218 aa14.96□□□□□ -0.01
SHMT2-201ENST00000328923 PLXNC1O60486 1568 aa14.96□□□□□ -0.02
SHMT2-201ENST00000328923 EFCAB2Q5VUJ9 269 aa14.96□□□□□ -0.02
SHMT2-201ENST00000328923 ISY1Q9ULR0 285 aaKnown RBP14.96□□□□□ -0.02
SHMT2-201ENST00000328923 ABCC1P33527 1531 aa14.95□□□□□ -0.02
SHMT2-201ENST00000328923 SEC24BO95487 1268 aa14.95□□□□□ -0.02
SHMT2-201ENST00000328923 RGS22Q8NE09 1264 aa14.95□□□□□ -0.02
SHMT2-201ENST00000328923 VIRMAQ69YN4 1812 aaKnown RBP14.95□□□□□ -0.02
SHMT2-201ENST00000328923 C20orf194Q5TEA3 1177 aa14.94□□□□□ -0.02
SHMT2-201ENST00000328923 XPCQ01831 940 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-201ENST00000328923 IRX3P78415 501 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-201ENST00000328923 CCDC173Q0VFZ6 552 aa14.93□□□□□ -0.02
SHMT2-201ENST00000328923 CERS3Q8IU89 383 aa14.93□□□□□ -0.02
SHMT2-201ENST00000328923 PPP1R9BQ96SB3 815 aa14.92□□□□□ -0.02
SHMT2-201ENST00000328923 CARD11Q9BXL7 1154 aa14.92□□□□□ -0.02
SHMT2-201ENST00000328923 FANCAO15360 1455 aa14.91□□□□□ -0.02
SHMT2-201ENST00000328923 TAF3Q5VWG9 929 aa14.91□□□□□ -0.02
SHMT2-201ENST00000328923 TBC1D2Q9BYX2 928 aa14.91□□□□□ -0.02
SHMT2-201ENST00000328923 FAM135AQ9P2D6 1515 aa14.91□□□□□ -0.02
SHMT2-201ENST00000328923 CFAP74Q9C0B2 1584 aa14.91□□□□□ -0.02
SHMT2-201ENST00000328923 COL17A1Q9UMD9 1497 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-201ENST00000328923 CD109Q6YHK3 1445 aa14.9□□□□□ -0.02
SHMT2-201ENST00000328923 UNC13BO14795 1591 aa14.9□□□□□ -0.02
SHMT2-201ENST00000328923 IGSF3O75054 1194 aa14.9□□□□□ -0.02
SHMT2-201ENST00000328923 CDCA7LQ96GN5 454 aa14.9□□□□□ -0.02
SHMT2-201ENST00000328923 IRX5P78411 483 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-201ENST00000328923 TRAPPC8Q9Y2L5 1435 aa14.9□□□□□ -0.02
SHMT2-201ENST00000328923 DUOX2Q9NRD8 1548 aa14.89□□□□□ -0.03
SHMT2-201ENST00000328923 ATP2B3Q16720 1220 aa14.89□□□□□ -0.03
SHMT2-201ENST00000328923 RNF216Q9NWF9 866 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-201ENST00000328923 LAMC1P11047 1609 aa14.89□□□□□ -0.03
SHMT2-201ENST00000328923 JARID2Q92833 1246 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-201ENST00000328923 ADGRL1O94910 1474 aa14.88□□□□□ -0.03
SHMT2-201ENST00000328923 SAMD1Q6SPF0 538 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-201ENST00000328923 ST20-MTHFSA0A0A6YYL1 179 aa14.87□□□□□ -0.03
SHMT2-201ENST00000328923 VGFO15240 615 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-201ENST00000328923 NLRP1Q9C000 1473 aa14.87□□□□□ -0.03
SHMT2-201ENST00000328923 TRPM1Q7Z4N2 1603 aa14.87□□□□□ -0.03
SHMT2-201ENST00000328923 ERBINQ96RT1 1412 aa14.86□□□□□ -0.03
SHMT2-201ENST00000328923 ZNF500O60304 480 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-201ENST00000328923 SASS6Q6UVJ0 657 aa14.86□□□□□ -0.03
SHMT2-201ENST00000328923 PANK3Q9H999 370 aa14.86□□□□□ -0.03
SHMT2-201ENST00000328923 NASPP49321 788 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-201ENST00000328923 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.86□□□□□ -0.03
SHMT2-201ENST00000328923 DDX11L8A8MPP1 907 aa14.85□□□□□ -0.03
SHMT2-201ENST00000328923 AEBP1Q8IUX7 1158 aa14.85□□□□□ -0.03
SHMT2-201ENST00000328923 TSC1Q92574 1164 aa14.85□□□□□ -0.03
SHMT2-201ENST00000328923 IQGAP3Q86VI3 1631 aa14.85□□□□□ -0.03
SHMT2-201ENST00000328923 NEO1Q92859 1461 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 PER1O15534 1290 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-201ENST00000328923 CHMP5Q9NZZ3 219 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 RTEL1-TNFRSF6BF6WH68 1400 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 MAGI2Q86UL8 1455 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 ZNF710Q8N1W2 664 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 AFAP1Q8N556 730 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 ZFYVE16Q7Z3T8 1539 aa14.84□□□□□ -0.03
SHMT2-201ENST00000328923 EIF3AQ14152 1382 aaKnown RBP14.83□□□□□ -0.04
SHMT2-201ENST00000328923 KCNJ4P48050 445 aa14.83□□□□□ -0.04
SHMT2-201ENST00000328923 NOL7Q9UMY1 257 aaKnown RBP14.83□□□□□ -0.04
SHMT2-201ENST00000328923 SPAG9O60271 1321 aaKnown RBP14.82□□□□□ -0.04
SHMT2-201ENST00000328923 SPDYE4A6NLX3 237 aa14.82□□□□□ -0.04
SHMT2-201ENST00000328923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.04
SHMT2-201ENST00000328923 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-201ENST00000328923 GPRASP1Q5JY77 1395 aa14.81□□□□□ -0.04
SHMT2-201ENST00000328923 KCNG1Q9UIX4 513 aa14.81□□□□□ -0.04
SHMT2-201ENST00000328923 SCAPERQ9BY12 1400 aa14.81□□□□□ -0.04
SHMT2-201ENST00000328923 INO80Q9ULG1 1556 aaPredicted RBP14.81□□□□□ -0.04
SHMT2-201ENST00000328923 ZBTB9Q96C00 473 aa14.8□□□□□ -0.04
SHMT2-201ENST00000328923 CSPP1Q1MSJ5 1256 aa14.8□□□□□ -0.04
SHMT2-201ENST00000328923 ZNF771Q7L3S4 317 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-201ENST00000328923 PRDM15P57071 1507 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-201ENST00000328923 PRAG1Q86YV5 1406 aa14.79□□□□□ -0.04
SHMT2-201ENST00000328923 HAP1P54257 671 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-201ENST00000328923 CHMP4CQ96CF2 233 aa14.79□□□□□ -0.04
SHMT2-201ENST00000328923 ATP7AQ04656 1500 aa14.78□□□□□ -0.04
SHMT2-201ENST00000328923 DNAJC2Q99543 621 aaKnown RBP14.78□□□□□ -0.04
SHMT2-201ENST00000328923 SLC52A1Q9NWF4 448 aa14.78□□□□□ -0.04
SHMT2-201ENST00000328923 PLA2R1Q13018 1463 aa14.78□□□□□ -0.04
SHMT2-201ENST00000328923 CCDC144AA2RUR9 1427 aa14.78□□□□□ -0.04
SHMT2-201ENST00000328923 POGZQ7Z3K3 1410 aa14.78□□□□□ -0.04
SHMT2-201ENST00000328923 TBC1D32Q96NH3 1257 aa14.77□□□□□ -0.04
SHMT2-201ENST00000328923 ZNF518AQ6AHZ1 1483 aa14.77□□□□□ -0.04
SHMT2-201ENST00000328923 SLC20A2Q08357 652 aa14.77□□□□□ -0.05
SHMT2-201ENST00000328923 ZBTB7CA1YPR0 619 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 HS1BP3Q53T59 392 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 RICTORQ6R327 1708 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 NGEFQ8N5V2 710 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 ZNF521Q96K83 1311 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 DUSP27Q5VZP5 1158 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 EIF2AK4Q9P2K8 1649 aaKnown RBP14.76□□□□□ -0.05
SHMT2-201ENST00000328923 KIDINS220Q9ULH0 1771 aa14.76□□□□□ -0.05
SHMT2-201ENST00000328923 FAM177BA6PVY3 158 aa14.75□□□□□ -0.05
SHMT2-201ENST00000328923 MYRIPQ8NFW9 859 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms