RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 LMTK3Q96Q04 1460 aa13.8□□□□□ -0.2
HMGB3-201ENST00000325307 CNGB1Q14028 1251 aaPredicted RBP13.8□□□□□ -0.2
HMGB3-201ENST00000325307 DAXXQ9UER7 740 aaPredicted RBP13.8□□□□□ -0.2
HMGB3-201ENST00000325307 ROBO2Q9HCK4 1378 aa13.8□□□□□ -0.2
HMGB3-201ENST00000325307 TMC1Q8TDI8 760 aa13.79□□□□□ -0.2
HMGB3-201ENST00000325307 TECPR2O15040 1411 aa13.79□□□□□ -0.2
HMGB3-201ENST00000325307 ANP32CO43423 234 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 KCNA6P17658 529 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 CABP2Q9NPB3 220 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 SIRT1Q96EB6 747 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 FAM135BQ49AJ0 1406 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 PIK3R4Q99570 1358 aa13.78□□□□□ -0.2
HMGB3-201ENST00000325307 CPS1P31327 1500 aa13.76□□□□□ -0.21
HMGB3-201ENST00000325307 CDK19Q9BWU1 502 aa13.76□□□□□ -0.21
HMGB3-201ENST00000325307 PANK3Q9H999 370 aa13.76□□□□□ -0.21
HMGB3-201ENST00000325307 KNDC1Q76NI1 1749 aa13.75□□□□□ -0.21
HMGB3-201ENST00000325307 YTHDC1Q96MU7 727 aaKnown RBP13.75□□□□□ -0.21
HMGB3-201ENST00000325307 TULP4Q9NRJ4 1543 aa13.75□□□□□ -0.21
HMGB3-201ENST00000325307 PTCH1Q13635 1447 aa13.74□□□□□ -0.21
HMGB3-201ENST00000325307 WASLO00401 505 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-201ENST00000325307 C14orf37Q86TY3 774 aa13.73□□□□□ -0.21
HMGB3-201ENST00000325307 RBM33Q96EV2 1170 aaKnown RBP13.73□□□□□ -0.21
HMGB3-201ENST00000325307 SLC12A5Q9H2X9 1139 aa13.73□□□□□ -0.21
HMGB3-201ENST00000325307 PUS7Q96PZ0 661 aaKnown RBP13.72□□□□□ -0.21
HMGB3-201ENST00000325307 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.21
HMGB3-201ENST00000325307 NUTM2FA1L443 756 aa13.71□□□□□ -0.21
HMGB3-201ENST00000325307 XRN1Q8IZH2 1706 aaKnown RBP13.71□□□□□ -0.21
HMGB3-201ENST00000325307 CENPBP07199 599 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-201ENST00000325307 KNSTRNQ9Y448 316 aa13.71□□□□□ -0.21
HMGB3-201ENST00000325307 PROSER2Q86WR7 435 aaPredicted RBP13.7□□□□□ -0.22
HMGB3-201ENST00000325307 CHD2O14647 1828 aaKnown RBP13.69□□□□□ -0.22
HMGB3-201ENST00000325307 NUDT16Q96DE0 195 aaKnown RBP13.68□□□□□ -0.22
HMGB3-201ENST00000325307 CABP1Q9NZU7 370 aa13.68□□□□□ -0.22
HMGB3-201ENST00000325307 CC2D1BQ5T0F9 858 aaKnown RBP13.68□□□□□ -0.22
HMGB3-201ENST00000325307 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.67□□□□□ -0.22
HMGB3-201ENST00000325307 PER1O15534 1290 aaPredicted RBP13.67□□□□□ -0.22
HMGB3-201ENST00000325307 PRKRIP1Q9H875 184 aaPredicted RBP13.67□□□□□ -0.22
HMGB3-201ENST00000325307 GTF3C3Q9Y5Q9 886 aa13.67□□□□□ -0.22
HMGB3-201ENST00000325307 MYOM1P52179 1685 aa13.67□□□□□ -0.22
HMGB3-201ENST00000325307 TERF2IPQ9NYB0 399 aa13.67□□□□□ -0.22
HMGB3-201ENST00000325307 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
HMGB3-201ENST00000325307 DMRT2Q9Y5R5 561 aa13.66□□□□□ -0.22
HMGB3-201ENST00000325307 NINLQ9Y2I6 1382 aa13.66□□□□□ -0.22
HMGB3-201ENST00000325307 HDGFL2Q7Z4V5 671 aaPredicted RBP13.66□□□□□ -0.22
HMGB3-201ENST00000325307 CCDC61Q9Y6R9 512 aa13.66□□□□□ -0.22
HMGB3-201ENST00000325307 KTN1Q86UP2 1357 aaKnown RBP13.65□□□□□ -0.22
HMGB3-201ENST00000325307 AEBP2Q6ZN18 517 aaPredicted RBP13.65□□□□□ -0.23
HMGB3-201ENST00000325307 CARD14Q9BXL6 1004 aa13.65□□□□□ -0.23
HMGB3-201ENST00000325307 PPIP5K1Q6PFW1 1433 aa13.64□□□□□ -0.23
HMGB3-201ENST00000325307 ANKRD36BQ8N2N9 1353 aa13.64□□□□□ -0.23
HMGB3-201ENST00000325307 ADGRB2O60241 1585 aa13.64□□□□□ -0.23
HMGB3-201ENST00000325307 NSD3Q9BZ95 1437 aa13.64□□□□□ -0.23
HMGB3-201ENST00000325307 PRR36Q9H6K5 1346 aa13.63□□□□□ -0.23
HMGB3-201ENST00000325307 NWD1Q149M9 1564 aa13.63□□□□□ -0.23
HMGB3-201ENST00000325307 ZNF335Q9H4Z2 1342 aaPredicted RBP13.63□□□□□ -0.23
HMGB3-201ENST00000325307 NKTRP30414 1462 aaKnown RBP13.63□□□□□ -0.23
HMGB3-201ENST00000325307 A0A1W2PP64 1363 aa13.63□□□□□ -0.23
HMGB3-201ENST00000325307 ADGRL3Q9HAR2 1447 aa13.62□□□□□ -0.23
HMGB3-201ENST00000325307 TMEM94Q12767 1356 aa13.62□□□□□ -0.23
HMGB3-201ENST00000325307 RALBP1Q15311 655 aa13.61□□□□□ -0.23
HMGB3-201ENST00000325307 ATP7BP35670 1465 aa13.61□□□□□ -0.23
HMGB3-201ENST00000325307 AMER1Q5JTC6 1135 aaPredicted RBP13.61□□□□□ -0.23
HMGB3-201ENST00000325307 CGNL1Q0VF96 1302 aa13.6□□□□□ -0.23
HMGB3-201ENST00000325307 CCER2I3L3R5 266 aa13.6□□□□□ -0.23
HMGB3-201ENST00000325307 PMFBP1Q8TBY8 1022 aa13.6□□□□□ -0.23
HMGB3-201ENST00000325307 C19orf44Q9H6X5 657 aa13.6□□□□□ -0.23
HMGB3-201ENST00000325307 NGDNQ8NEJ9 315 aaKnown RBP13.59□□□□□ -0.23
HMGB3-201ENST00000325307 NALCNQ8IZF0 1738 aa13.59□□□□□ -0.23
HMGB3-201ENST00000325307 ATF3P18847 181 aa13.59□□□□□ -0.23
HMGB3-201ENST00000325307 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGB3-201ENST00000325307 MRS2Q9HD23 443 aa13.58□□□□□ -0.24
HMGB3-201ENST00000325307 ACEP12821 1306 aa13.58□□□□□ -0.24
HMGB3-201ENST00000325307 STRCP1A6NGW2 1772 aa13.58□□□□□ -0.24
HMGB3-201ENST00000325307 MYBBP1AQ9BQG0 1328 aaKnown RBP13.57□□□□□ -0.24
HMGB3-201ENST00000325307 CDC42BPGQ6DT37 1551 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 CD163L1Q9NR16 1453 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 ANKARQ7Z5J8 1434 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 PLEKHG3A1L390 1219 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 ESCO1Q5FWF5 840 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 ZNF692Q9BU19 519 aaPredicted RBP13.57□□□□□ -0.24
HMGB3-201ENST00000325307 PARD3Q8TEW0 1356 aa13.57□□□□□ -0.24
HMGB3-201ENST00000325307 TNNT2P45379 298 aaPredicted RBP13.56□□□□□ -0.24
HMGB3-201ENST00000325307 MORC1Q86VD1 984 aa13.56□□□□□ -0.24
HMGB3-201ENST00000325307 MSH6P52701 1360 aa13.56□□□□□ -0.24
HMGB3-201ENST00000325307 NPC1L1Q9UHC9 1359 aa13.56□□□□□ -0.24
HMGB3-201ENST00000325307 GGNBP2Q9H3C7 697 aa13.55□□□□□ -0.24
HMGB3-201ENST00000325307 CCDC184Q52MB2 194 aa13.55□□□□□ -0.24
HMGB3-201ENST00000325307 PHF8Q9UPP1 1060 aa13.55□□□□□ -0.24
HMGB3-201ENST00000325307 FMN2Q9NZ56 1722 aa13.54□□□□□ -0.24
HMGB3-201ENST00000325307 CPSF1Q10570 1443 aaKnown RBP13.54□□□□□ -0.24
HMGB3-201ENST00000325307 CADPS2Q86UW7 1296 aa13.54□□□□□ -0.24
HMGB3-201ENST00000325307 USP32Q8NFA0 1604 aa13.54□□□□□ -0.24
HMGB3-201ENST00000325307 NCOA3Q9Y6Q9 1424 aa13.54□□□□□ -0.24
HMGB3-201ENST00000325307 NLRP13Q86W25 1043 aa13.53□□□□□ -0.24
HMGB3-201ENST00000325307 EDC4Q6P2E9 1401 aaKnown RBP13.53□□□□□ -0.24
HMGB3-201ENST00000325307 LRRC7Q96NW7 1537 aa13.53□□□□□ -0.24
HMGB3-201ENST00000325307 FYB1O15117 783 aa13.53□□□□□ -0.24
HMGB3-201ENST00000325307 ORAI2Q96SN7 254 aa13.52□□□□□ -0.24
HMGB3-201ENST00000325307 RGPD8O14715 1765 aaPredicted RBP13.52□□□□□ -0.24
HMGB3-201ENST00000325307 ITSN1Q15811 1721 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms