RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ABCC11Q96J66 1382 aa23.36■■□□□ 1.33
HDDC2-201ENST00000318787 JCADQ9P266 1359 aa23.36■■□□□ 1.33
HDDC2-201ENST00000318787 CDC42BPGQ6DT37 1551 aa23.36■■□□□ 1.33
HDDC2-201ENST00000318787 C1orf167Q5SNV9 1468 aa23.36■■□□□ 1.33
HDDC2-201ENST00000318787 NUTM2FA1L443 756 aa23.35■■□□□ 1.33
HDDC2-201ENST00000318787 SAFB2Q14151 953 aaKnown RBP eCLIP23.35■■□□□ 1.33
HDDC2-201ENST00000318787 DDX17Q92841 729 aaKnown RBP23.35■■□□□ 1.33
HDDC2-201ENST00000318787 SHPRHQ149N8 1683 aa23.33■■□□□ 1.32
HDDC2-201ENST00000318787 ORAI2Q96SN7 254 aa23.31■■□□□ 1.32
HDDC2-201ENST00000318787 RGS17Q9UGC6 210 aaPredicted RBP23.31■■□□□ 1.32
HDDC2-201ENST00000318787 FMN2Q9NZ56 1722 aa23.3■■□□□ 1.32
HDDC2-201ENST00000318787 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
HDDC2-201ENST00000318787 POGKQ9P215 609 aa23.3■■□□□ 1.32
HDDC2-201ENST00000318787 TRAK1Q9UPV9 953 aa23.3■■□□□ 1.32
HDDC2-201ENST00000318787 ESCO1Q5FWF5 840 aa23.29■■□□□ 1.32
HDDC2-201ENST00000318787 PRAM1Q96QH2 718 aa23.29■■□□□ 1.32
HDDC2-201ENST00000318787 ADGRB1O14514 1584 aa23.29■■□□□ 1.32
HDDC2-201ENST00000318787 RGPD8O14715 1765 aaPredicted RBP23.29■■□□□ 1.32
HDDC2-201ENST00000318787 NEUROD1Q13562 356 aa23.27■■□□□ 1.32
HDDC2-201ENST00000318787 MEX3CQ5U5Q3 659 aaKnown RBP23.27■■□□□ 1.32
HDDC2-201ENST00000318787 NUTM2BA6NNL0 878 aaPredicted RBP23.27■■□□□ 1.31
HDDC2-201ENST00000318787 NUTM2EB1AL46 878 aaPredicted RBP23.27■■□□□ 1.31
HDDC2-201ENST00000318787 NUTM2AQ8IVF1 878 aaPredicted RBP23.27■■□□□ 1.31
HDDC2-201ENST00000318787 STAC3Q96MF2 364 aa23.27■■□□□ 1.31
HDDC2-201ENST00000318787 SIN3AQ96ST3 1273 aa23.26■■□□□ 1.31
HDDC2-201ENST00000318787 DLC1Q96QB1 1528 aa23.24■■□□□ 1.31
HDDC2-201ENST00000318787 ARHGEF28Q8N1W1 1705 aaKnown RBP23.24■■□□□ 1.31
HDDC2-201ENST00000318787 LRP6O75581 1613 aa23.23■■□□□ 1.31
HDDC2-201ENST00000318787 LRRC59Q96AG4 307 aaKnown RBP23.23■■□□□ 1.31
HDDC2-201ENST00000318787 SPATA31A6Q5VVP1 1343 aa23.23■■□□□ 1.31
HDDC2-201ENST00000318787 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
HDDC2-201ENST00000318787 SIRT1Q96EB6 747 aa23.22■■□□□ 1.31
HDDC2-201ENST00000318787 HIRIP3Q9BW71 556 aaPredicted RBP23.22■■□□□ 1.31
HDDC2-201ENST00000318787 MINK1Q8N4C8 1332 aaPredicted RBP23.21■■□□□ 1.31
HDDC2-201ENST00000318787 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
HDDC2-201ENST00000318787 KIF1AQ12756 1690 aa23.19■■□□□ 1.3
HDDC2-201ENST00000318787 FOXO3O43524 673 aa23.18■■□□□ 1.3
HDDC2-201ENST00000318787 POTEAQ6S8J7 498 aa23.18■■□□□ 1.3
HDDC2-201ENST00000318787 NPHP3Q7Z494 1330 aa23.17■■□□□ 1.3
HDDC2-201ENST00000318787 PNPLA6Q8IY17 1366 aa23.16■■□□□ 1.3
HDDC2-201ENST00000318787 L3MBTL2Q969R5 705 aa23.16■■□□□ 1.3
HDDC2-201ENST00000318787 ADGRB2O60241 1585 aa23.16■■□□□ 1.3
HDDC2-201ENST00000318787 SOS2Q07890 1332 aaPredicted RBP23.15■■□□□ 1.3
HDDC2-201ENST00000318787 USP32Q8NFA0 1604 aa23.14■■□□□ 1.29
HDDC2-201ENST00000318787 NBPF1Q3BBV0 1214 aa23.14■■□□□ 1.29
HDDC2-201ENST00000318787 POTEDQ86YR6 584 aa23.12■■□□□ 1.29
HDDC2-201ENST00000318787 PXDNQ92626 1479 aa23.12■■□□□ 1.29
HDDC2-201ENST00000318787 PHF8Q9UPP1 1060 aa23.11■■□□□ 1.29
HDDC2-201ENST00000318787 TRPM1Q7Z4N2 1603 aa23.1■■□□□ 1.29
HDDC2-201ENST00000318787 ADAMTS2O95450 1211 aa23.1■■□□□ 1.29
HDDC2-201ENST00000318787 PMFBP1Q8TBY8 1022 aa23.09■■□□□ 1.29
HDDC2-201ENST00000318787 PLEKHG5O94827 1062 aa23.08■■□□□ 1.29
HDDC2-201ENST00000318787 C8orf37Q96NL8 207 aa23.08■■□□□ 1.29
HDDC2-201ENST00000318787 COL22A1Q8NFW1 1626 aaPredicted RBP23.07■■□□□ 1.28
HDDC2-201ENST00000318787 ITSN1Q15811 1721 aa23.07■■□□□ 1.28
HDDC2-201ENST00000318787 QRICH2Q9H0J4 1663 aa23.07■■□□□ 1.28
HDDC2-201ENST00000318787 ANKARQ7Z5J8 1434 aa23.06■■□□□ 1.28
HDDC2-201ENST00000318787 TULP4Q9NRJ4 1543 aa23.06■■□□□ 1.28
HDDC2-201ENST00000318787 WASLO00401 505 aaPredicted RBP23.06■■□□□ 1.28
HDDC2-201ENST00000318787 KRT28Q7Z3Y7 464 aa23.06■■□□□ 1.28
HDDC2-201ENST00000318787 EIF3AQ14152 1382 aaKnown RBP23.06■■□□□ 1.28
HDDC2-201ENST00000318787 LMOD2Q6P5Q4 547 aa23.05■■□□□ 1.28
HDDC2-201ENST00000318787 TONSLQ96HA7 1378 aa23.04■■□□□ 1.28
HDDC2-201ENST00000318787 PSME1Q06323 249 aa23.04■■□□□ 1.28
HDDC2-201ENST00000318787 AFF2P51816 1311 aa23.04■■□□□ 1.28
HDDC2-201ENST00000318787 ZNF772Q68DY9 489 aaPredicted RBP23.03■■□□□ 1.28
HDDC2-201ENST00000318787 MARF1Q9Y4F3 1742 aaKnown RBP23.03■■□□□ 1.28
HDDC2-201ENST00000318787 PRR36Q9H6K5 1346 aa23.02■■□□□ 1.28
HDDC2-201ENST00000318787 ROCK2O75116 1388 aaKnown RBP23.02■■□□□ 1.28
HDDC2-201ENST00000318787 NGLY1Q96IV0 654 aa23.01■■□□□ 1.27
HDDC2-201ENST00000318787 HAP1P54257 671 aaPredicted RBP23■■□□□ 1.27
HDDC2-201ENST00000318787 SPATA31A3Q5VYP0 1347 aa22.99■■□□□ 1.27
HDDC2-201ENST00000318787 CENPJQ9HC77 1338 aaPredicted RBP22.99■■□□□ 1.27
HDDC2-201ENST00000318787 NGDNQ8NEJ9 315 aaKnown RBP22.99■■□□□ 1.27
HDDC2-201ENST00000318787 CDK19Q9BWU1 502 aa22.99■■□□□ 1.27
HDDC2-201ENST00000318787 TNS3Q68CZ2 1445 aa22.98■■□□□ 1.27
HDDC2-201ENST00000318787 PCGF6Q9BYE7 350 aa22.98■■□□□ 1.27
HDDC2-201ENST00000318787 ATP7BP35670 1465 aa22.97■■□□□ 1.27
HDDC2-201ENST00000318787 NUDT16Q96DE0 195 aaKnown RBP22.97■■□□□ 1.27
HDDC2-201ENST00000318787 GPRASP1Q5JY77 1395 aa22.97■■□□□ 1.27
HDDC2-201ENST00000318787 TRPM3Q9HCF6 1732 aaPredicted RBP22.96■■□□□ 1.27
HDDC2-201ENST00000318787 SRPK2P78362 688 aaKnown RBP22.96■■□□□ 1.27
HDDC2-201ENST00000318787 TOPAZ1Q8N9V7 1692 aa22.95■■□□□ 1.27
HDDC2-201ENST00000318787 NBPF8Q3BBV2 869 aa22.95■■□□□ 1.26
HDDC2-201ENST00000318787 ABCA3Q99758 1704 aa22.95■■□□□ 1.26
HDDC2-201ENST00000318787 PAK3O75914 559 aaPredicted RBP22.94■■□□□ 1.26
HDDC2-201ENST00000318787 CABLES1Q8TDN4 633 aa22.93■■□□□ 1.26
HDDC2-201ENST00000318787 RXRBP28702 533 aa22.92■■□□□ 1.26
HDDC2-201ENST00000318787 SBNO1A3KN83 1393 aa22.91■■□□□ 1.26
HDDC2-201ENST00000318787 USP21Q9UK80 565 aa22.91■■□□□ 1.26
HDDC2-201ENST00000318787 ARHGEF10O15013 1369 aa22.91■■□□□ 1.26
HDDC2-201ENST00000318787 ALS2Q96Q42 1657 aa22.9■■□□□ 1.26
HDDC2-201ENST00000318787 QTRT2Q9H974 415 aaKnown RBP22.9■■□□□ 1.26
HDDC2-201ENST00000318787 CABP2Q9NPB3 220 aa22.9■■□□□ 1.26
HDDC2-201ENST00000318787 CARD11Q9BXL7 1154 aa22.89■■□□□ 1.25
HDDC2-201ENST00000318787 CCDC61Q9Y6R9 512 aa22.87■■□□□ 1.25
HDDC2-201ENST00000318787 PPIP5K1Q6PFW1 1433 aa22.87■■□□□ 1.25
HDDC2-201ENST00000318787 ACEP12821 1306 aa22.86■■□□□ 1.25
HDDC2-201ENST00000318787 PLCH1Q4KWH8 1693 aa22.85■■□□□ 1.25
HDDC2-201ENST00000318787 RALGAPBQ86X10 1494 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms