RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 CFAP70Q5T0N1 1121 aa26.01■■□□□ 1.75
TPM1-203ENST00000317516 DHX57Q6P158 1386 aaKnown RBP26.01■■□□□ 1.75
TPM1-203ENST00000317516 STAC3Q96MF2 364 aa26.01■■□□□ 1.75
TPM1-203ENST00000317516 ESCO1Q5FWF5 840 aa26■■□□□ 1.75
TPM1-203ENST00000317516 YTHDC2Q9H6S0 1430 aaKnown RBP25.99■■□□□ 1.75
TPM1-203ENST00000317516 MYOM2P54296 1465 aa25.98■■□□□ 1.75
TPM1-203ENST00000317516 IFT172Q9UG01 1749 aa25.97■■□□□ 1.75
TPM1-203ENST00000317516 LRP6O75581 1613 aa25.96■■□□□ 1.75
TPM1-203ENST00000317516 SOS2Q07890 1332 aaPredicted RBP25.96■■□□□ 1.75
TPM1-203ENST00000317516 NRXN1Q9ULB1 1477 aa25.96■■□□□ 1.75
TPM1-203ENST00000317516 SHPRHQ149N8 1683 aa25.96■■□□□ 1.75
TPM1-203ENST00000317516 DCAF11Q8TEB1 546 aa25.95■■□□□ 1.74
TPM1-203ENST00000317516 KDM2AQ9Y2K7 1162 aa25.95■■□□□ 1.74
TPM1-203ENST00000317516 NPHP3Q7Z494 1330 aa25.94■■□□□ 1.74
TPM1-203ENST00000317516 NHSL1Q5SYE7 1610 aa25.94■■□□□ 1.74
TPM1-203ENST00000317516 PNPLA6Q8IY17 1366 aa25.94■■□□□ 1.74
TPM1-203ENST00000317516 PLEKHH1Q9ULM0 1364 aa25.93■■□□□ 1.74
TPM1-203ENST00000317516 CDC42BPGQ6DT37 1551 aa25.91■■□□□ 1.74
TPM1-203ENST00000317516 NUTM2FA1L443 756 aa25.91■■□□□ 1.74
TPM1-203ENST00000317516 FOXO3O43524 673 aa25.9■■□□□ 1.74
TPM1-203ENST00000317516 POGKQ9P215 609 aa25.9■■□□□ 1.74
TPM1-203ENST00000317516 PRAM1Q96QH2 718 aa25.89■■□□□ 1.74
TPM1-203ENST00000317516 C8orf37Q96NL8 207 aa25.87■■□□□ 1.73
TPM1-203ENST00000317516 AFF2P51816 1311 aa25.87■■□□□ 1.73
TPM1-203ENST00000317516 RXRBP28702 533 aa25.86■■□□□ 1.73
TPM1-203ENST00000317516 SAFB2Q14151 953 aaKnown RBP eCLIP25.85■■□□□ 1.73
TPM1-203ENST00000317516 LAMC1P11047 1609 aa25.85■■□□□ 1.73
TPM1-203ENST00000317516 ADAMTS2O95450 1211 aa25.84■■□□□ 1.73
TPM1-203ENST00000317516 KNDC1Q76NI1 1749 aa25.84■■□□□ 1.73
TPM1-203ENST00000317516 NGLY1Q96IV0 654 aa25.84■■□□□ 1.73
TPM1-203ENST00000317516 TRAK1Q9UPV9 953 aa25.84■■□□□ 1.73
TPM1-203ENST00000317516 XPCQ01831 940 aaPredicted RBP25.81■■□□□ 1.72
TPM1-203ENST00000317516 QTRT2Q9H974 415 aaKnown RBP25.79■■□□□ 1.72
TPM1-203ENST00000317516 PHF8Q9UPP1 1060 aa25.79■■□□□ 1.72
TPM1-203ENST00000317516 DLC1Q96QB1 1528 aa25.78■■□□□ 1.72
TPM1-203ENST00000317516 PSME1Q06323 249 aa25.78■■□□□ 1.72
TPM1-203ENST00000317516 KRT28Q7Z3Y7 464 aa25.77■■□□□ 1.72
TPM1-203ENST00000317516 PXDNQ92626 1479 aa25.76■■□□□ 1.71
TPM1-203ENST00000317516 ADGRB1O14514 1584 aa25.74■■□□□ 1.71
TPM1-203ENST00000317516 RBM6P78332 1123 aaKnown RBP25.74■■□□□ 1.71
TPM1-203ENST00000317516 SPATA31A3Q5VYP0 1347 aa25.73■■□□□ 1.71
TPM1-203ENST00000317516 USP21Q9UK80 565 aa25.73■■□□□ 1.71
TPM1-203ENST00000317516 MINK1Q8N4C8 1332 aaPredicted RBP25.72■■□□□ 1.71
TPM1-203ENST00000317516 FNBP4Q8N3X1 1017 aaPredicted RBP25.72■■□□□ 1.71
TPM1-203ENST00000317516 HIRIP3Q9BW71 556 aaPredicted RBP25.72■■□□□ 1.71
TPM1-203ENST00000317516 EIF3AQ14152 1382 aaKnown RBP25.71■■□□□ 1.71
TPM1-203ENST00000317516 FMN2Q9NZ56 1722 aa25.71■■□□□ 1.71
TPM1-203ENST00000317516 ANKARQ7Z5J8 1434 aa25.7■■□□□ 1.7
TPM1-203ENST00000317516 WASLO00401 505 aaPredicted RBP25.69■■□□□ 1.7
TPM1-203ENST00000317516 TRPC5Q9UL62 973 aaPredicted RBP25.69■■□□□ 1.7
TPM1-203ENST00000317516 CDK12Q9NYV4 1490 aaPredicted RBP25.68■■□□□ 1.7
TPM1-203ENST00000317516 PMFBP1Q8TBY8 1022 aa25.67■■□□□ 1.7
TPM1-203ENST00000317516 KIF1AQ12756 1690 aa25.67■■□□□ 1.7
TPM1-203ENST00000317516 HAP1P54257 671 aaPredicted RBP25.66■■□□□ 1.7
TPM1-203ENST00000317516 COL22A1Q8NFW1 1626 aaPredicted RBP25.66■■□□□ 1.7
TPM1-203ENST00000317516 LMOD2Q6P5Q4 547 aa25.64■■□□□ 1.7
TPM1-203ENST00000317516 SBNO1A3KN83 1393 aa25.64■■□□□ 1.69
TPM1-203ENST00000317516 ADGRB2O60241 1585 aa25.61■■□□□ 1.69
TPM1-203ENST00000317516 ARHGEF10O15013 1369 aa25.61■■□□□ 1.69
TPM1-203ENST00000317516 GPRASP1Q5JY77 1395 aa25.61■■□□□ 1.69
TPM1-203ENST00000317516 TNS3Q68CZ2 1445 aa25.61■■□□□ 1.69
TPM1-203ENST00000317516 NGDNQ8NEJ9 315 aaKnown RBP25.6■■□□□ 1.69
TPM1-203ENST00000317516 UPF1Q92900 1129 aaKnown RBP eCLIP25.6■■□□□ 1.69
TPM1-203ENST00000317516 NBPF1Q3BBV0 1214 aa25.59■■□□□ 1.69
TPM1-203ENST00000317516 PRR36Q9H6K5 1346 aa25.59■■□□□ 1.69
TPM1-203ENST00000317516 L3MBTL2Q969R5 705 aa25.57■■□□□ 1.68
TPM1-203ENST00000317516 CABLES1Q8TDN4 633 aa25.56■■□□□ 1.68
TPM1-203ENST00000317516 NUDT16Q96DE0 195 aaKnown RBP25.56■■□□□ 1.68
TPM1-203ENST00000317516 CDK19Q9BWU1 502 aa25.56■■□□□ 1.68
TPM1-203ENST00000317516 TULP4Q9NRJ4 1543 aa25.56■■□□□ 1.68
TPM1-203ENST00000317516 PLEKHG5O94827 1062 aa25.55■■□□□ 1.68
TPM1-203ENST00000317516 NEUROD1Q13562 356 aa25.55■■□□□ 1.68
TPM1-203ENST00000317516 UNC5CLQ8IV45 518 aa25.55■■□□□ 1.68
TPM1-203ENST00000317516 SIN3AQ96ST3 1273 aa25.55■■□□□ 1.68
TPM1-203ENST00000317516 RGS12O14924 1447 aa25.54■■□□□ 1.68
TPM1-203ENST00000317516 ATRNO75882 1429 aa25.54■■□□□ 1.68
TPM1-203ENST00000317516 BCL9LQ86UU0 1499 aa25.54■■□□□ 1.68
TPM1-203ENST00000317516 GJD4Q96KN9 370 aaPredicted RBP25.53■■□□□ 1.68
TPM1-203ENST00000317516 RGPD8O14715 1765 aaPredicted RBP25.51■■□□□ 1.67
TPM1-203ENST00000317516 PAK3O75914 559 aaPredicted RBP25.51■■□□□ 1.67
TPM1-203ENST00000317516 CCDC61Q9Y6R9 512 aa25.51■■□□□ 1.67
TPM1-203ENST00000317516 USP32Q8NFA0 1604 aa25.5■■□□□ 1.67
TPM1-203ENST00000317516 KIAA1210Q9ULL0 1709 aa25.49■■□□□ 1.67
TPM1-203ENST00000317516 CENPJQ9HC77 1338 aaPredicted RBP25.49■■□□□ 1.67
TPM1-203ENST00000317516 SLIT2O94813 1529 aa25.47■■□□□ 1.67
TPM1-203ENST00000317516 ARHGEF28Q8N1W1 1705 aaKnown RBP25.46■■□□□ 1.67
TPM1-203ENST00000317516 ATAD2Q6PL18 1390 aa25.45■■□□□ 1.67
TPM1-203ENST00000317516 SRPK2P78362 688 aaKnown RBP25.45■■□□□ 1.66
TPM1-203ENST00000317516 PLEKHG3A1L390 1219 aa25.44■■□□□ 1.66
TPM1-203ENST00000317516 FAM83GA6ND36 823 aa25.44■■□□□ 1.66
TPM1-203ENST00000317516 ATP7BP35670 1465 aa25.44■■□□□ 1.66
TPM1-203ENST00000317516 VPS72Q15906 364 aa25.43■■□□□ 1.66
TPM1-203ENST00000317516 NBPF8Q3BBV2 869 aa25.43■■□□□ 1.66
TPM1-203ENST00000317516 ACEP12821 1306 aa25.42■■□□□ 1.66
TPM1-203ENST00000317516 CCDC9Q9Y3X0 531 aaKnown RBP25.42■■□□□ 1.66
TPM1-203ENST00000317516 MARF1Q9Y4F3 1742 aaKnown RBP25.41■■□□□ 1.66
TPM1-203ENST00000317516 TRIM26Q12899 539 aaPredicted RBP25.4■■□□□ 1.66
TPM1-203ENST00000317516 POLR3AO14802 1390 aaPredicted RBP25.39■■□□□ 1.65
TPM1-203ENST00000317516 CABP2Q9NPB3 220 aa25.38■■□□□ 1.65
TPM1-203ENST00000317516 ROCK2O75116 1388 aaKnown RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms