RNA–Protein interactions for RNA: ENST00000312196.8

MSL3-201, Transcript of MSL complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSL3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-201ENST00000312196 RBM6P78332 1123 aaKnown RBP12.54□□□□□ -0.4
MSL3-201ENST00000312196 DLC1Q96QB1 1528 aa12.54□□□□□ -0.4
MSL3-201ENST00000312196 FOXD1Q16676 465 aa12.53□□□□□ -0.4
MSL3-201ENST00000312196 NUTM2DQ5VT03 806 aaPredicted RBP12.53□□□□□ -0.4
MSL3-201ENST00000312196 SENP3Q9H4L4 574 aaPredicted RBP12.52□□□□□ -0.41
MSL3-201ENST00000312196 ROBO2Q9HCK4 1378 aa12.51□□□□□ -0.41
MSL3-201ENST00000312196 AFF2P51816 1311 aa12.51□□□□□ -0.41
MSL3-201ENST00000312196 RAB3GAP2Q9H2M9 1393 aa12.5□□□□□ -0.41
MSL3-201ENST00000312196 FNBP4Q8N3X1 1017 aaPredicted RBP12.5□□□□□ -0.41
MSL3-201ENST00000312196 NGLY1Q96IV0 654 aa12.5□□□□□ -0.41
MSL3-201ENST00000312196 C14orf93Q9H972 538 aaKnown RBP12.49□□□□□ -0.41
MSL3-201ENST00000312196 KIF1AQ12756 1690 aa12.49□□□□□ -0.41
MSL3-201ENST00000312196 ATRNO75882 1429 aa12.49□□□□□ -0.41
MSL3-201ENST00000312196 CCDC125Q86Z20 511 aa12.48□□□□□ -0.41
MSL3-201ENST00000312196 FMN2Q9NZ56 1722 aa12.48□□□□□ -0.41
MSL3-201ENST00000312196 ADGRB2O60241 1585 aa12.48□□□□□ -0.41
MSL3-201ENST00000312196 NPHP3Q7Z494 1330 aa12.47□□□□□ -0.41
MSL3-201ENST00000312196 ADGRF5Q8IZF2 1346 aa12.47□□□□□ -0.41
MSL3-201ENST00000312196 ATAD2Q6PL18 1390 aa12.47□□□□□ -0.41
MSL3-201ENST00000312196 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.47□□□□□ -0.41
MSL3-201ENST00000312196 YTHDC2Q9H6S0 1430 aaKnown RBP12.47□□□□□ -0.41
MSL3-201ENST00000312196 RGS12O14924 1447 aa12.46□□□□□ -0.41
MSL3-201ENST00000312196 PXDNQ92626 1479 aa12.46□□□□□ -0.41
MSL3-201ENST00000312196 QTRT2Q9H974 415 aaKnown RBP12.46□□□□□ -0.41
MSL3-201ENST00000312196 TRPC5Q9UL62 973 aaPredicted RBP12.46□□□□□ -0.41
MSL3-201ENST00000312196 KIAA1210Q9ULL0 1709 aa12.46□□□□□ -0.42
MSL3-201ENST00000312196 DHX57Q6P158 1386 aaKnown RBP12.45□□□□□ -0.42
MSL3-201ENST00000312196 MARF1Q9Y4F3 1742 aaKnown RBP12.44□□□□□ -0.42
MSL3-201ENST00000312196 ADGRB1O14514 1584 aa12.44□□□□□ -0.42
MSL3-201ENST00000312196 ANKARQ7Z5J8 1434 aa12.43□□□□□ -0.42
MSL3-201ENST00000312196 EIF3AQ14152 1382 aaKnown RBP12.42□□□□□ -0.42
MSL3-201ENST00000312196 NUTM2BA6NNL0 878 aaPredicted RBP12.42□□□□□ -0.42
MSL3-201ENST00000312196 NUTM2EB1AL46 878 aaPredicted RBP12.42□□□□□ -0.42
MSL3-201ENST00000312196 NUTM2AQ8IVF1 878 aaPredicted RBP12.42□□□□□ -0.42
MSL3-201ENST00000312196 SBNO1A3KN83 1393 aa12.4□□□□□ -0.42
MSL3-201ENST00000312196 C8orf37Q96NL8 207 aa12.4□□□□□ -0.42
MSL3-201ENST00000312196 USP21Q9UK80 565 aa12.4□□□□□ -0.42
MSL3-201ENST00000312196 SLIT2O94813 1529 aa12.39□□□□□ -0.43
MSL3-201ENST00000312196 ORAI2Q96SN7 254 aa12.38□□□□□ -0.43
MSL3-201ENST00000312196 BCL9LQ86UU0 1499 aa12.38□□□□□ -0.43
MSL3-201ENST00000312196 SPATA31A3Q5VYP0 1347 aa12.37□□□□□ -0.43
MSL3-201ENST00000312196 RGL3Q3MIN7 710 aa12.37□□□□□ -0.43
MSL3-201ENST00000312196 NWD2Q9ULI1 1742 aa12.36□□□□□ -0.43
MSL3-201ENST00000312196 PSME1Q06323 249 aa12.36□□□□□ -0.43
MSL3-201ENST00000312196 ARHGEF10O15013 1369 aa12.35□□□□□ -0.43
MSL3-201ENST00000312196 PLEKHH1Q9ULM0 1364 aa12.35□□□□□ -0.43
MSL3-201ENST00000312196 ONECUT3O60422 494 aaPredicted RBP12.34□□□□□ -0.43
MSL3-201ENST00000312196 ESCO1Q5FWF5 840 aa12.34□□□□□ -0.43
MSL3-201ENST00000312196 GJD4Q96KN9 370 aaPredicted RBP12.34□□□□□ -0.43
MSL3-201ENST00000312196 TULP4Q9NRJ4 1543 aa12.34□□□□□ -0.43
MSL3-201ENST00000312196 USP32Q8NFA0 1604 aa12.34□□□□□ -0.43
MSL3-201ENST00000312196 TNS3Q68CZ2 1445 aa12.34□□□□□ -0.43
MSL3-201ENST00000312196 CFAP70Q5T0N1 1121 aa12.33□□□□□ -0.44
MSL3-201ENST00000312196 UNC5CLQ8IV45 518 aa12.33□□□□□ -0.44
MSL3-201ENST00000312196 DDX17Q92841 729 aaKnown RBP12.33□□□□□ -0.44
MSL3-201ENST00000312196 ARHGEF28Q8N1W1 1705 aaKnown RBP12.33□□□□□ -0.44
MSL3-201ENST00000312196 ADAMTS2O95450 1211 aa12.32□□□□□ -0.44
MSL3-201ENST00000312196 WAPLQ7Z5K2 1190 aa12.32□□□□□ -0.44
MSL3-201ENST00000312196 ITSN1Q15811 1721 aa12.32□□□□□ -0.44
MSL3-201ENST00000312196 BLMP54132 1417 aaPredicted RBP12.32□□□□□ -0.44
MSL3-201ENST00000312196 VPS72Q15906 364 aa12.32□□□□□ -0.44
MSL3-201ENST00000312196 TMEM132EQ6IEE7 984 aa12.32□□□□□ -0.44
MSL3-201ENST00000312196 TRPM3Q9HCF6 1732 aaPredicted RBP12.31□□□□□ -0.44
MSL3-201ENST00000312196 GLI3P10071 1580 aa12.3□□□□□ -0.44
MSL3-201ENST00000312196 RALGAPBQ86X10 1494 aa12.3□□□□□ -0.44
MSL3-201ENST00000312196 KRT28Q7Z3Y7 464 aa12.3□□□□□ -0.44
MSL3-201ENST00000312196 STK26Q9P289 416 aa12.3□□□□□ -0.44
MSL3-201ENST00000312196 ZRANB1Q9UGI0 708 aa12.3□□□□□ -0.44
MSL3-201ENST00000312196 BRD4O60885 1362 aaPredicted RBP12.3□□□□□ -0.44
MSL3-201ENST00000312196 PHF8Q9UPP1 1060 aa12.29□□□□□ -0.44
MSL3-201ENST00000312196 ABCA3Q99758 1704 aa12.29□□□□□ -0.44
MSL3-201ENST00000312196 ALS2Q96Q42 1657 aa12.29□□□□□ -0.44
MSL3-201ENST00000312196 TOPAZ1Q8N9V7 1692 aa12.28□□□□□ -0.44
MSL3-201ENST00000312196 PRAM1Q96QH2 718 aa12.28□□□□□ -0.44
MSL3-201ENST00000312196 RGPD8O14715 1765 aaPredicted RBP12.28□□□□□ -0.44
MSL3-201ENST00000312196 FOXO3O43524 673 aa12.28□□□□□ -0.44
MSL3-201ENST00000312196 DCAF11Q8TEB1 546 aa12.27□□□□□ -0.45
MSL3-201ENST00000312196 POGKQ9P215 609 aa12.27□□□□□ -0.45
MSL3-201ENST00000312196 ATP7BP35670 1465 aa12.26□□□□□ -0.45
MSL3-201ENST00000312196 CRYBG1Q9Y4K1 1723 aa12.26□□□□□ -0.45
MSL3-201ENST00000312196 COL14A1Q05707 1796 aaKnown RBP12.26□□□□□ -0.45
MSL3-201ENST00000312196 LRP5O75197 1615 aa12.26□□□□□ -0.45
MSL3-201ENST00000312196 WASLO00401 505 aaPredicted RBP12.26□□□□□ -0.45
MSL3-201ENST00000312196 PLCH1Q4KWH8 1693 aa12.25□□□□□ -0.45
MSL3-201ENST00000312196 NRAPQ86VF7 1730 aa12.25□□□□□ -0.45
MSL3-201ENST00000312196 DISP2A7MBM2 1401 aa12.24□□□□□ -0.45
MSL3-201ENST00000312196 POLR3AO14802 1390 aaPredicted RBP12.23□□□□□ -0.45
MSL3-201ENST00000312196 GPRASP1Q5JY77 1395 aa12.23□□□□□ -0.45
MSL3-201ENST00000312196 TRPM1Q7Z4N2 1603 aa12.22□□□□□ -0.45
MSL3-201ENST00000312196 PLEKHG3A1L390 1219 aa12.22□□□□□ -0.45
MSL3-201ENST00000312196 PRR36Q9H6K5 1346 aa12.21□□□□□ -0.45
MSL3-201ENST00000312196 C11orf95C9JLR9 678 aaPredicted RBP12.2□□□□□ -0.46
MSL3-201ENST00000312196 TRAK1Q9UPV9 953 aa12.2□□□□□ -0.46
MSL3-201ENST00000312196 SF3B2Q13435 895 aaKnown RBP12.2□□□□□ -0.46
MSL3-201ENST00000312196 SEPT12Q8IYM1 358 aa12.2□□□□□ -0.46
MSL3-201ENST00000312196 PARD3Q8TEW0 1356 aa12.19□□□□□ -0.46
MSL3-201ENST00000312196 THSD7AQ9UPZ6 1657 aa12.19□□□□□ -0.46
MSL3-201ENST00000312196 KDM2AQ9Y2K7 1162 aa12.19□□□□□ -0.46
MSL3-201ENST00000312196 RGPD1P0DJD0 1748 aa12.19□□□□□ -0.46
MSL3-201ENST00000312196 KRT27Q7Z3Y8 459 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms