RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 NUTM2GQ5VZR2 741 aa16.04■□□□□ 0.16
RETREG3-201ENST00000309428 EVC2Q86UK5 1308 aa16.04■□□□□ 0.16
RETREG3-201ENST00000309428 RSPH6AQ9H0K4 717 aa16.03■□□□□ 0.16
RETREG3-201ENST00000309428 RBM33Q96EV2 1170 aaKnown RBP16.03■□□□□ 0.16
RETREG3-201ENST00000309428 ZRANB1Q9UGI0 708 aa16.03■□□□□ 0.16
RETREG3-201ENST00000309428 HSP90AA2PQ14568 343 aaPredicted RBP16.02■□□□□ 0.16
RETREG3-201ENST00000309428 ADGBQ8N7X0 1667 aa16.02■□□□□ 0.16
RETREG3-201ENST00000309428 RLBP1P12271 317 aa16.02■□□□□ 0.15
RETREG3-201ENST00000309428 RUNDC1Q96C34 613 aa16.02■□□□□ 0.15
RETREG3-201ENST00000309428 RRS1Q15050 365 aaKnown RBP16.01■□□□□ 0.15
RETREG3-201ENST00000309428 COL17A1Q9UMD9 1497 aaPredicted RBP16.01■□□□□ 0.15
RETREG3-201ENST00000309428 ASXL2Q76L83 1435 aa16.01■□□□□ 0.15
RETREG3-201ENST00000309428 NECTIN2Q92692 538 aa16.01■□□□□ 0.15
RETREG3-201ENST00000309428 LTV1Q96GA3 475 aaPredicted RBP16.01■□□□□ 0.15
RETREG3-201ENST00000309428 SHANK2Q9UPX8 1470 aa16.01■□□□□ 0.15
RETREG3-201ENST00000309428 CHD1O14646 1710 aa16.01■□□□□ 0.15
RETREG3-201ENST00000309428 DCTN1Q14203 1278 aa16.01■□□□□ 0.15
RETREG3-201ENST00000309428 LMOD2Q6P5Q4 547 aa16■□□□□ 0.15
RETREG3-201ENST00000309428 HSCBQ8IWL3 235 aa16■□□□□ 0.15
RETREG3-201ENST00000309428 HDGFL2Q7Z4V5 671 aaPredicted RBP16■□□□□ 0.15
RETREG3-201ENST00000309428 CD109Q6YHK3 1445 aa15.99■□□□□ 0.15
RETREG3-201ENST00000309428 SEC24BO95487 1268 aa15.99■□□□□ 0.15
RETREG3-201ENST00000309428 MYH16Q9H6N6 1097 aa15.99■□□□□ 0.15
RETREG3-201ENST00000309428 SCAF11Q99590 1463 aaKnown RBP15.98■□□□□ 0.15
RETREG3-201ENST00000309428 LNPKQ9C0E8 428 aa15.98■□□□□ 0.15
RETREG3-201ENST00000309428 ABCC2Q92887 1545 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 RNF123Q5XPI4 1314 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 CDK19Q9BWU1 502 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 KDM5DQ9BY66 1539 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 CDC42BPBQ9Y5S2 1711 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 PRKAR2BP31323 418 aa15.97■□□□□ 0.15
RETREG3-201ENST00000309428 TERF2IPQ9NYB0 399 aa15.96■□□□□ 0.15
RETREG3-201ENST00000309428 DUOX2Q9NRD8 1548 aa15.96■□□□□ 0.15
RETREG3-201ENST00000309428 DNTTIP2Q5QJE6 756 aaKnown RBP15.95■□□□□ 0.14
RETREG3-201ENST00000309428 SLC26A8Q96RN1 970 aa15.95■□□□□ 0.14
RETREG3-201ENST00000309428 PCDHB15Q9Y5E8 787 aa15.95■□□□□ 0.14
RETREG3-201ENST00000309428 PDZRN3Q9UPQ7 1066 aa15.95■□□□□ 0.14
RETREG3-201ENST00000309428 EMILIN1Q9Y6C2 1016 aa15.95■□□□□ 0.14
RETREG3-201ENST00000309428 PLCB2Q00722 1185 aa15.95■□□□□ 0.14
RETREG3-201ENST00000309428 DIAPH1O60610 1272 aaKnown RBP15.94■□□□□ 0.14
RETREG3-201ENST00000309428 CEBPAP49715 358 aaPredicted RBP15.94■□□□□ 0.14
RETREG3-201ENST00000309428 PMFBP1Q8TBY8 1022 aa15.94■□□□□ 0.14
RETREG3-201ENST00000309428 GOLGA6L22H0YM25 854 aa15.93■□□□□ 0.14
RETREG3-201ENST00000309428 PTMAP06454 111 aaKnown RBP15.93■□□□□ 0.14
RETREG3-201ENST00000309428 ATP10AO60312 1499 aa15.93■□□□□ 0.14
RETREG3-201ENST00000309428 RARSP54136 660 aaKnown RBP15.93■□□□□ 0.14
RETREG3-201ENST00000309428 FOXD4L5Q5VV16 416 aaPredicted RBP15.93■□□□□ 0.14
RETREG3-201ENST00000309428 FOXD4L4Q8WXT5 416 aaPredicted RBP15.93■□□□□ 0.14
RETREG3-201ENST00000309428 NOB1Q9ULX3 412 aaKnown RBP15.93■□□□□ 0.14
RETREG3-201ENST00000309428 FAM83GA6ND36 823 aa15.92■□□□□ 0.14
RETREG3-201ENST00000309428 NME9Q86XW9 330 aa15.92■□□□□ 0.14
RETREG3-201ENST00000309428 MIS18AQ9NYP9 233 aa15.92■□□□□ 0.14
RETREG3-201ENST00000309428 ZKSCAN2Q63HK3 967 aa15.92■□□□□ 0.14
RETREG3-201ENST00000309428 SLC4A10Q6U841 1118 aa15.92■□□□□ 0.14
RETREG3-201ENST00000309428 DZIP1LQ8IYY4 767 aaKnown RBP15.92■□□□□ 0.14
RETREG3-201ENST00000309428 C14orf93Q9H972 538 aaKnown RBP15.92■□□□□ 0.14
RETREG3-201ENST00000309428 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
RETREG3-201ENST00000309428 SSH1Q8WYL5 1049 aa15.9■□□□□ 0.14
RETREG3-201ENST00000309428 GPRASP1Q5JY77 1395 aa15.9■□□□□ 0.14
RETREG3-201ENST00000309428 WDR7Q9Y4E6 1490 aa15.9■□□□□ 0.14
RETREG3-201ENST00000309428 ANKRD45Q5TZF3 282 aa15.89■□□□□ 0.13
RETREG3-201ENST00000309428 RWDD1Q9H446 243 aaPredicted RBP15.89■□□□□ 0.13
RETREG3-201ENST00000309428 MSNP26038 577 aaKnown RBP15.88■□□□□ 0.13
RETREG3-201ENST00000309428 PREX2Q70Z35 1606 aa15.88■□□□□ 0.13
RETREG3-201ENST00000309428 TMPOP42166 694 aaKnown RBP15.88■□□□□ 0.13
RETREG3-201ENST00000309428 PKNOX2Q96KN3 472 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 FOXD4L6Q3SYB3 417 aaPredicted RBP15.87■□□□□ 0.13
RETREG3-201ENST00000309428 FOXD4L3Q6VB84 417 aaPredicted RBP15.87■□□□□ 0.13
RETREG3-201ENST00000309428 CROCC2H7BZ55 1655 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 FYB1O15117 783 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 KRT24Q2M2I5 525 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 C8orf34Q49A92 452 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 MAST1Q9Y2H9 1570 aa15.87■□□□□ 0.13
RETREG3-201ENST00000309428 TMEM57Q8N5G2 664 aa15.86■□□□□ 0.13
RETREG3-201ENST00000309428 ASXL1Q8IXJ9 1541 aa15.86■□□□□ 0.13
RETREG3-201ENST00000309428 FAM43AQ8N2R8 423 aa15.86■□□□□ 0.13
RETREG3-201ENST00000309428 ARHGEF5Q12774 1597 aa15.86■□□□□ 0.13
RETREG3-201ENST00000309428 NOL8Q76FK4 1167 aaKnown RBP15.85■□□□□ 0.13
RETREG3-201ENST00000309428 ADCY10Q96PN6 1610 aa15.85■□□□□ 0.13
RETREG3-201ENST00000309428 MYO5CQ9NQX4 1742 aa15.84■□□□□ 0.13
RETREG3-201ENST00000309428 PHACTR3Q96KR7 559 aa15.84■□□□□ 0.13
RETREG3-201ENST00000309428 PANK2Q9BZ23 570 aa15.84■□□□□ 0.13
RETREG3-201ENST00000309428 NKTRP30414 1462 aaKnown RBP15.84■□□□□ 0.13
RETREG3-201ENST00000309428 TRIM27P14373 513 aa15.84■□□□□ 0.13
RETREG3-201ENST00000309428 TRAK2O60296 914 aa15.83■□□□□ 0.13
RETREG3-201ENST00000309428 FAM13BQ9NYF5 915 aa15.83■□□□□ 0.12
RETREG3-201ENST00000309428 ZCCHC11Q5TAX3 1644 aaKnown RBP15.83■□□□□ 0.12
RETREG3-201ENST00000309428 ATP7AQ04656 1500 aa15.82■□□□□ 0.12
RETREG3-201ENST00000309428 TSPYL6Q8N831 410 aa15.82■□□□□ 0.12
RETREG3-201ENST00000309428 MCM10Q7L590 875 aa15.82■□□□□ 0.12
RETREG3-201ENST00000309428 NGDNQ8NEJ9 315 aaKnown RBP15.82■□□□□ 0.12
RETREG3-201ENST00000309428 COG3Q96JB2 828 aa15.82■□□□□ 0.12
RETREG3-201ENST00000309428 TRPM1Q7Z4N2 1603 aa15.82■□□□□ 0.12
RETREG3-201ENST00000309428 NPATQ14207 1427 aa15.81■□□□□ 0.12
RETREG3-201ENST00000309428 RBM10P98175 930 aaKnown RBP15.81■□□□□ 0.12
RETREG3-201ENST00000309428 SULT6B1Q6IMI4 303 aa15.81■□□□□ 0.12
RETREG3-201ENST00000309428 AEBP1Q8IUX7 1158 aa15.81■□□□□ 0.12
RETREG3-201ENST00000309428 UBE2Q2Q8WVN8 375 aa15.8■□□□□ 0.12
RETREG3-201ENST00000309428 GBP4Q96PP9 640 aa15.8■□□□□ 0.12
RETREG3-201ENST00000309428 C22orf23Q9BZE7 217 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms