RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 HDGFP51858 240 aaKnown RBP18.89■□□□□ 0.62
PTPN9-201ENST00000306726 MYOM2P54296 1465 aa18.89■□□□□ 0.61
PTPN9-201ENST00000306726 TMF1P82094 1093 aa18.87■□□□□ 0.61
PTPN9-201ENST00000306726 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.87■□□□□ 0.61
PTPN9-201ENST00000306726 PANK1Q8TE04 598 aa18.87■□□□□ 0.61
PTPN9-201ENST00000306726 UHRF1BP1Q6BDS2 1440 aa18.87■□□□□ 0.61
PTPN9-201ENST00000306726 PTPRMP28827 1452 aa18.86■□□□□ 0.61
PTPN9-201ENST00000306726 TPRNQ4KMQ1 711 aa18.86■□□□□ 0.61
PTPN9-201ENST00000306726 A2ML1A8K2U0 1454 aa18.85■□□□□ 0.61
PTPN9-201ENST00000306726 FOXD4L1Q9NU39 408 aa18.85■□□□□ 0.61
PTPN9-201ENST00000306726 STAG3Q9UJ98 1225 aa18.85■□□□□ 0.61
PTPN9-201ENST00000306726 TMEM131LA2VDJ0 1609 aa18.85■□□□□ 0.61
PTPN9-201ENST00000306726 ZFYVE9O95405 1425 aa18.85■□□□□ 0.61
PTPN9-201ENST00000306726 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.84■□□□□ 0.61
PTPN9-201ENST00000306726 ZNF142P52746 1687 aaPredicted RBP18.84■□□□□ 0.61
PTPN9-201ENST00000306726 GOLGA2Q08379 1002 aa18.83■□□□□ 0.61
PTPN9-201ENST00000306726 MYO3AQ8NEV4 1616 aa18.83■□□□□ 0.61
PTPN9-201ENST00000306726 IDI1Q13907 227 aa18.83■□□□□ 0.61
PTPN9-201ENST00000306726 FBXO31Q5XUX0 539 aaPredicted RBP18.83■□□□□ 0.61
PTPN9-201ENST00000306726 UGGT1Q9NYU2 1555 aa18.83■□□□□ 0.6
PTPN9-201ENST00000306726 SETD1BQ9UPS6 1966 aaKnown RBP18.83■□□□□ 0.6
PTPN9-201ENST00000306726 IFT172Q9UG01 1749 aa18.82■□□□□ 0.6
PTPN9-201ENST00000306726 ZBTB7CA1YPR0 619 aa18.82■□□□□ 0.6
PTPN9-201ENST00000306726 CFAP65Q6ZU64 1925 aaKnown RBP18.81■□□□□ 0.6
PTPN9-201ENST00000306726 VGFO15240 615 aaPredicted RBP18.8■□□□□ 0.6
PTPN9-201ENST00000306726 PPLO60437 1756 aa18.79■□□□□ 0.6
PTPN9-201ENST00000306726 KIAA1210Q9ULL0 1709 aa18.79■□□□□ 0.6
PTPN9-201ENST00000306726 HSP90AA1P07900 732 aaKnown RBP18.79■□□□□ 0.6
PTPN9-201ENST00000306726 CEP170BQ9Y4F5 1589 aaPredicted RBP18.79■□□□□ 0.6
PTPN9-201ENST00000306726 UBR1Q8IWV7 1749 aa18.78■□□□□ 0.6
PTPN9-201ENST00000306726 LAMC1P11047 1609 aa18.78■□□□□ 0.6
PTPN9-201ENST00000306726 THEMISQ8N1K5 641 aaPredicted RBP18.78■□□□□ 0.6
PTPN9-201ENST00000306726 UPF2Q9HAU5 1272 aaKnown RBP18.78■□□□□ 0.6
PTPN9-201ENST00000306726 NEXMIFQ5QGS0 1516 aa18.77■□□□□ 0.6
PTPN9-201ENST00000306726 NRXN1Q9ULB1 1477 aa18.77■□□□□ 0.6
PTPN9-201ENST00000306726 FAM161AQ3B820 660 aa18.77■□□□□ 0.6
PTPN9-201ENST00000306726 PRAG1Q86YV5 1406 aa18.77■□□□□ 0.59
PTPN9-201ENST00000306726 RALGAPBQ86X10 1494 aa18.77■□□□□ 0.59
PTPN9-201ENST00000306726 NAP1L5Q96NT1 182 aaPredicted RBP18.76■□□□□ 0.59
PTPN9-201ENST00000306726 U2SURPO15042 1029 aaKnown RBP18.76■□□□□ 0.59
PTPN9-201ENST00000306726 SLIT1O75093 1534 aa18.76■□□□□ 0.59
PTPN9-201ENST00000306726 POGKQ9P215 609 aa18.75■□□□□ 0.59
PTPN9-201ENST00000306726 MFAP1P55081 439 aaKnown RBP18.75■□□□□ 0.59
PTPN9-201ENST00000306726 ARID3AQ99856 593 aa18.75■□□□□ 0.59
PTPN9-201ENST00000306726 RIMS2Q9UQ26 1411 aa18.74■□□□□ 0.59
PTPN9-201ENST00000306726 CEBPAP49715 358 aaPredicted RBP18.73■□□□□ 0.59
PTPN9-201ENST00000306726 ARHGAP23Q9P227 1491 aa18.73■□□□□ 0.59
PTPN9-201ENST00000306726 TMEM2Q9UHN6 1383 aa18.73■□□□□ 0.59
PTPN9-201ENST00000306726 EID1Q9Y6B2 187 aa18.73■□□□□ 0.59
PTPN9-201ENST00000306726 SPINK5Q9NQ38 1064 aaPredicted RBP18.72■□□□□ 0.59
PTPN9-201ENST00000306726 TNNQ9UQP3 1299 aa18.72■□□□□ 0.59
PTPN9-201ENST00000306726 PDE3BQ13370 1112 aa18.71■□□□□ 0.58
PTPN9-201ENST00000306726 BRD4O60885 1362 aaPredicted RBP18.7■□□□□ 0.58
PTPN9-201ENST00000306726 SEC24BO95487 1268 aa18.7■□□□□ 0.58
PTPN9-201ENST00000306726 FTSJ3Q8IY81 847 aaKnown RBP18.7■□□□□ 0.58
PTPN9-201ENST00000306726 TRPM1Q7Z4N2 1603 aa18.7■□□□□ 0.58
PTPN9-201ENST00000306726 SETBP1Q9Y6X0 1596 aa18.7■□□□□ 0.58
PTPN9-201ENST00000306726 PPP2R1AP30153 589 aa18.7■□□□□ 0.58
PTPN9-201ENST00000306726 TRAK1Q9UPV9 953 aa18.7■□□□□ 0.58
PTPN9-201ENST00000306726 SLC24A1O60721 1099 aa18.69■□□□□ 0.58
PTPN9-201ENST00000306726 CENPQQ7L2Z9 268 aaPredicted RBP18.69■□□□□ 0.58
PTPN9-201ENST00000306726 PIK3C2GO75747 1445 aa18.69■□□□□ 0.58
PTPN9-201ENST00000306726 MYO5BQ9ULV0 1848 aa18.69■□□□□ 0.58
PTPN9-201ENST00000306726 GPRASP1Q5JY77 1395 aa18.69■□□□□ 0.58
PTPN9-201ENST00000306726 MS4A1P11836 297 aa18.68■□□□□ 0.58
PTPN9-201ENST00000306726 APBB1O00213 710 aa18.68■□□□□ 0.58
PTPN9-201ENST00000306726 STK26Q9P289 416 aa18.68■□□□□ 0.58
PTPN9-201ENST00000306726 DIP2AQ14689 1571 aa18.67■□□□□ 0.58
PTPN9-201ENST00000306726 IGHDP01880 384 aa18.67■□□□□ 0.58
PTPN9-201ENST00000306726 BECN1Q14457 450 aa18.67■□□□□ 0.58
PTPN9-201ENST00000306726 ELL2O00472 640 aaPredicted RBP18.67■□□□□ 0.58
PTPN9-201ENST00000306726 DMRT2Q9Y5R5 561 aa18.67■□□□□ 0.58
PTPN9-201ENST00000306726 DISP3Q9P2K9 1392 aa18.66■□□□□ 0.58
PTPN9-201ENST00000306726 PLEKHG1Q9ULL1 1385 aa18.66■□□□□ 0.58
PTPN9-201ENST00000306726 MORC1Q86VD1 984 aa18.66■□□□□ 0.58
PTPN9-201ENST00000306726 KDM4FA0A1W2PPD8 638 aa18.65■□□□□ 0.58
PTPN9-201ENST00000306726 U2AF1L5P0DN76 240 aaPredicted RBP18.65■□□□□ 0.58
PTPN9-201ENST00000306726 U2AF1Q01081 240 aaKnown RBP eCLIP18.65■□□□□ 0.58
PTPN9-201ENST00000306726 SCAF11Q99590 1463 aaKnown RBP18.65■□□□□ 0.58
PTPN9-201ENST00000306726 NCLP19338 710 aaKnown RBP18.65■□□□□ 0.58
PTPN9-201ENST00000306726 EIF3AQ14152 1382 aaKnown RBP18.64■□□□□ 0.58
PTPN9-201ENST00000306726 USP35Q9P2H5 1018 aa18.64■□□□□ 0.57
PTPN9-201ENST00000306726 CENPJQ9HC77 1338 aaPredicted RBP18.63■□□□□ 0.57
PTPN9-201ENST00000306726 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
PTPN9-201ENST00000306726 CFAP70Q5T0N1 1121 aa18.62■□□□□ 0.57
PTPN9-201ENST00000306726 C14orf93Q9H972 538 aaKnown RBP18.62■□□□□ 0.57
PTPN9-201ENST00000306726 TMEM132EQ6IEE7 984 aa18.62■□□□□ 0.57
PTPN9-201ENST00000306726 ANKLE2Q86XL3 938 aa18.62■□□□□ 0.57
PTPN9-201ENST00000306726 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
PTPN9-201ENST00000306726 DUSP27Q5VZP5 1158 aa18.61■□□□□ 0.57
PTPN9-201ENST00000306726 ITPRIPQ8IWB1 547 aa18.61■□□□□ 0.57
PTPN9-201ENST00000306726 ADGRF5Q8IZF2 1346 aa18.6■□□□□ 0.57
PTPN9-201ENST00000306726 TXNDC2Q86VQ3 553 aa18.59■□□□□ 0.57
PTPN9-201ENST00000306726 TSR2Q969E8 191 aaKnown RBP18.58■□□□□ 0.57
PTPN9-201ENST00000306726 PIK3R4Q99570 1358 aa18.58■□□□□ 0.57
PTPN9-201ENST00000306726 RNF123Q5XPI4 1314 aa18.58■□□□□ 0.56
PTPN9-201ENST00000306726 C8orf34Q49A92 452 aa18.58■□□□□ 0.56
PTPN9-201ENST00000306726 POLR1AO95602 1720 aaPredicted RBP18.58■□□□□ 0.56
PTPN9-201ENST00000306726 PER1O15534 1290 aaPredicted RBP18.57■□□□□ 0.56
PTPN9-201ENST00000306726 MED14O60244 1454 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms