RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 RRP7AQ9Y3A4 280 aaKnown RBP13.78□□□□□ -0.2
ZNF558-201ENST00000301475 SPHKAPQ2M3C7 1700 aa13.78□□□□□ -0.2
ZNF558-201ENST00000301475 SHPRHQ149N8 1683 aa13.78□□□□□ -0.2
ZNF558-201ENST00000301475 NEUROD2Q15784 382 aa13.78□□□□□ -0.2
ZNF558-201ENST00000301475 SCAPERQ9BY12 1400 aa13.78□□□□□ -0.2
ZNF558-201ENST00000301475 NCOA3Q9Y6Q9 1424 aa13.78□□□□□ -0.2
ZNF558-201ENST00000301475 GAS2L3Q86XJ1 694 aa13.77□□□□□ -0.2
ZNF558-201ENST00000301475 DDX11L8A8MPP1 907 aa13.77□□□□□ -0.21
ZNF558-201ENST00000301475 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
ZNF558-201ENST00000301475 AAMPQ13685 434 aa13.77□□□□□ -0.21
ZNF558-201ENST00000301475 CARD14Q9BXL6 1004 aa13.77□□□□□ -0.21
ZNF558-201ENST00000301475 TTC37Q6PGP7 1564 aa13.76□□□□□ -0.21
ZNF558-201ENST00000301475 DDIT3P35638 169 aa13.76□□□□□ -0.21
ZNF558-201ENST00000301475 RWDD1Q9H446 243 aaPredicted RBP13.76□□□□□ -0.21
ZNF558-201ENST00000301475 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
ZNF558-201ENST00000301475 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.75□□□□□ -0.21
ZNF558-201ENST00000301475 DUOX2Q9NRD8 1548 aa13.75□□□□□ -0.21
ZNF558-201ENST00000301475 RSPH4AQ5TD94 716 aa13.75□□□□□ -0.21
ZNF558-201ENST00000301475 POLR3AO14802 1390 aaPredicted RBP13.75□□□□□ -0.21
ZNF558-201ENST00000301475 CYB5RLQ6IPT4 315 aa13.75□□□□□ -0.21
ZNF558-201ENST00000301475 ISY1Q9ULR0 285 aaKnown RBP13.74□□□□□ -0.21
ZNF558-201ENST00000301475 AFAP1Q8N556 730 aa13.74□□□□□ -0.21
ZNF558-201ENST00000301475 ERVK-7P63135 1459 aa13.74□□□□□ -0.21
ZNF558-201ENST00000301475 EFCAB2Q5VUJ9 269 aa13.74□□□□□ -0.21
ZNF558-201ENST00000301475 HSCBQ8IWL3 235 aa13.74□□□□□ -0.21
ZNF558-201ENST00000301475 PHF23Q9BUL5 403 aaPredicted RBP13.74□□□□□ -0.21
ZNF558-201ENST00000301475 ZCCHC11Q5TAX3 1644 aaKnown RBP13.73□□□□□ -0.21
ZNF558-201ENST00000301475 MVPQ14764 893 aaKnown RBP13.73□□□□□ -0.21
ZNF558-201ENST00000301475 TNPO1Q92973 898 aaKnown RBP13.72□□□□□ -0.21
ZNF558-201ENST00000301475 TRIM44Q96DX7 344 aaPredicted RBP13.72□□□□□ -0.21
ZNF558-201ENST00000301475 TCP11L2Q8N4U5 519 aa13.72□□□□□ -0.21
ZNF558-201ENST00000301475 CLTCL1P53675 1640 aa13.7□□□□□ -0.22
ZNF558-201ENST00000301475 TPM2P07951 284 aa13.7□□□□□ -0.22
ZNF558-201ENST00000301475 RUNDC1Q96C34 613 aa13.7□□□□□ -0.22
ZNF558-201ENST00000301475 TRPM2O94759 1503 aa13.7□□□□□ -0.22
ZNF558-201ENST00000301475 TNNT2P45379 298 aaPredicted RBP13.68□□□□□ -0.22
ZNF558-201ENST00000301475 WDR63Q8IWG1 891 aa13.68□□□□□ -0.22
ZNF558-201ENST00000301475 SMC5Q8IY18 1101 aa13.68□□□□□ -0.22
ZNF558-201ENST00000301475 KIAA1211Q6ZU35 1233 aa13.68□□□□□ -0.22
ZNF558-201ENST00000301475 UHRF1BP1LA0JNW5 1464 aa13.68□□□□□ -0.22
ZNF558-201ENST00000301475 RBM25P49756 843 aaKnown RBP13.67□□□□□ -0.22
ZNF558-201ENST00000301475 RAB3GAP1Q15042 981 aa13.67□□□□□ -0.22
ZNF558-201ENST00000301475 PLCH2O75038 1416 aa13.67□□□□□ -0.22
ZNF558-201ENST00000301475 ASXL2Q76L83 1435 aa13.67□□□□□ -0.22
ZNF558-201ENST00000301475 FTSJ3Q8IY81 847 aaKnown RBP13.67□□□□□ -0.22
ZNF558-201ENST00000301475 SNX21Q969T3 373 aa13.67□□□□□ -0.22
ZNF558-201ENST00000301475 KANK1Q14678 1352 aa13.67□□□□□ -0.22
ZNF558-201ENST00000301475 ZKSCAN2Q63HK3 967 aa13.66□□□□□ -0.22
ZNF558-201ENST00000301475 DZIP1LQ8IYY4 767 aaKnown RBP13.66□□□□□ -0.22
ZNF558-201ENST00000301475 KIAA1210Q9ULL0 1709 aa13.66□□□□□ -0.22
ZNF558-201ENST00000301475 HDAC1Q13547 482 aaPredicted RBP13.66□□□□□ -0.22
ZNF558-201ENST00000301475 PDCL3Q9H2J4 239 aa13.66□□□□□ -0.22
ZNF558-201ENST00000301475 CD2BP2O95400 341 aaKnown RBP13.65□□□□□ -0.22
ZNF558-201ENST00000301475 GBP4Q96PP9 640 aa13.65□□□□□ -0.22
ZNF558-201ENST00000301475 CIZ1Q9ULV3 898 aaPredicted RBP13.65□□□□□ -0.22
ZNF558-201ENST00000301475 NSD3Q9BZ95 1437 aa13.65□□□□□ -0.22
ZNF558-201ENST00000301475 TRAPPC8Q9Y2L5 1435 aa13.65□□□□□ -0.22
ZNF558-201ENST00000301475 ABCA6Q8N139 1617 aa13.65□□□□□ -0.22
ZNF558-201ENST00000301475 HSP90AB1P08238 724 aaKnown RBP13.64□□□□□ -0.23
ZNF558-201ENST00000301475 TRIM27P14373 513 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 CFAP70Q5T0N1 1121 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 SPAG9O60271 1321 aaKnown RBP13.64□□□□□ -0.23
ZNF558-201ENST00000301475 PPP1R9BQ96SB3 815 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 KIF2CQ99661 725 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 FOXD4L1Q9NU39 408 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 CCDC173Q0VFZ6 552 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 CCDC27Q2M243 656 aa13.64□□□□□ -0.23
ZNF558-201ENST00000301475 TSR2Q969E8 191 aaKnown RBP13.64□□□□□ -0.23
ZNF558-201ENST00000301475 PTPRTO14522 1441 aa13.63□□□□□ -0.23
ZNF558-201ENST00000301475 MORC1Q86VD1 984 aa13.63□□□□□ -0.23
ZNF558-201ENST00000301475 SKOR2Q2VWA4 1001 aaPredicted RBP13.63□□□□□ -0.23
ZNF558-201ENST00000301475 ZNF518AQ6AHZ1 1483 aa13.63□□□□□ -0.23
ZNF558-201ENST00000301475 NASPP49321 788 aaPredicted RBP13.62□□□□□ -0.23
ZNF558-201ENST00000301475 RIPK4P57078 832 aa13.62□□□□□ -0.23
ZNF558-201ENST00000301475 ZSCAN30Q86W11 494 aa13.62□□□□□ -0.23
ZNF558-201ENST00000301475 ITPRIPQ8IWB1 547 aa13.62□□□□□ -0.23
ZNF558-201ENST00000301475 SMC4Q9NTJ3 1288 aa13.62□□□□□ -0.23
ZNF558-201ENST00000301475 AK9Q5TCS8 1911 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 ADGRB2O60241 1585 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 OFD1O75665 1012 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 SSFA2P28290 1259 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 MAP3K4Q9Y6R4 1608 aa13.61□□□□□ -0.23
ZNF558-201ENST00000301475 FANCAO15360 1455 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 MTHFSP49914 203 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 LNPKQ9C0E8 428 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 MYO3AQ8NEV4 1616 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 SSH1Q8WYL5 1049 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 DDX19BQ9UMR2 479 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 ADGRF5Q8IZF2 1346 aa13.6□□□□□ -0.23
ZNF558-201ENST00000301475 RBM42Q9BTD8 480 aaKnown RBP13.59□□□□□ -0.23
ZNF558-201ENST00000301475 CFAP74Q9C0B2 1584 aa13.59□□□□□ -0.23
ZNF558-201ENST00000301475 RBM10P98175 930 aaKnown RBP13.59□□□□□ -0.23
ZNF558-201ENST00000301475 EXOSC9Q06265 439 aaKnown RBP13.59□□□□□ -0.23
ZNF558-201ENST00000301475 NUCB1Q02818 461 aa13.58□□□□□ -0.23
ZNF558-201ENST00000301475 ATF7IPQ6VMQ6 1270 aa13.58□□□□□ -0.23
ZNF558-201ENST00000301475 TMEM57Q8N5G2 664 aa13.58□□□□□ -0.23
ZNF558-201ENST00000301475 UGGT1Q9NYU2 1555 aa13.58□□□□□ -0.23
ZNF558-201ENST00000301475 GAS2L2Q8NHY3 880 aa13.58□□□□□ -0.24
ZNF558-201ENST00000301475 ZBTB40Q9NUA8 1239 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms