RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.34□□□□□ -0.92
CD44-204ENST00000279452 ADGRB1O14514 1584 aa9.33□□□□□ -0.92
CD44-204ENST00000279452 DCCP43146 1447 aa9.33□□□□□ -0.92
CD44-204ENST00000279452 NUTM2FA1L443 756 aa9.33□□□□□ -0.92
CD44-204ENST00000279452 HSPA1LP34931 641 aa9.32□□□□□ -0.92
CD44-204ENST00000279452 NBPF1Q3BBV0 1214 aa9.32□□□□□ -0.92
CD44-204ENST00000279452 HIRIP3Q9BW71 556 aaPredicted RBP9.32□□□□□ -0.92
CD44-204ENST00000279452 ROBO1Q9Y6N7 1651 aa9.32□□□□□ -0.92
CD44-204ENST00000279452 MINK1Q8N4C8 1332 aaPredicted RBP9.31□□□□□ -0.92
CD44-204ENST00000279452 FAM135BQ49AJ0 1406 aa9.31□□□□□ -0.92
CD44-204ENST00000279452 DLC1Q96QB1 1528 aa9.31□□□□□ -0.92
CD44-204ENST00000279452 KIAA1210Q9ULL0 1709 aa9.31□□□□□ -0.92
CD44-204ENST00000279452 MST1RQ04912 1400 aa9.31□□□□□ -0.92
CD44-204ENST00000279452 CLSPNQ9HAW4 1339 aa9.31□□□□□ -0.92
CD44-204ENST00000279452 CDC42BPGQ6DT37 1551 aa9.3□□□□□ -0.92
CD44-204ENST00000279452 NBPF8Q3BBV2 869 aa9.3□□□□□ -0.92
CD44-204ENST00000279452 TRPM1Q7Z4N2 1603 aa9.3□□□□□ -0.92
CD44-204ENST00000279452 EIF3AQ14152 1382 aaKnown RBP9.29□□□□□ -0.92
CD44-204ENST00000279452 ESCO1Q5FWF5 840 aa9.29□□□□□ -0.92
CD44-204ENST00000279452 SIRT1Q96EB6 747 aa9.29□□□□□ -0.92
CD44-204ENST00000279452 CARD11Q9BXL7 1154 aa9.29□□□□□ -0.92
CD44-204ENST00000279452 C1orf167Q5SNV9 1468 aa9.28□□□□□ -0.92
CD44-204ENST00000279452 ARHGEF28Q8N1W1 1705 aaKnown RBP9.28□□□□□ -0.92
CD44-204ENST00000279452 BRINP3Q76B58 766 aa9.28□□□□□ -0.92
CD44-204ENST00000279452 CENPJQ9HC77 1338 aaPredicted RBP9.28□□□□□ -0.92
CD44-204ENST00000279452 RALGAPBQ86X10 1494 aa9.28□□□□□ -0.92
CD44-204ENST00000279452 ORAI2Q96SN7 254 aa9.27□□□□□ -0.93
CD44-204ENST00000279452 PHLPP1O60346 1717 aa9.26□□□□□ -0.93
CD44-204ENST00000279452 DDX17Q92841 729 aaKnown RBP9.26□□□□□ -0.93
CD44-204ENST00000279452 FMN2Q9NZ56 1722 aa9.25□□□□□ -0.93
CD44-204ENST00000279452 ADGRB2O60241 1585 aa9.25□□□□□ -0.93
CD44-204ENST00000279452 SRPK2P78362 688 aaKnown RBP9.25□□□□□ -0.93
CD44-204ENST00000279452 QRICH2Q9H0J4 1663 aa9.24□□□□□ -0.93
CD44-204ENST00000279452 WASLO00401 505 aaPredicted RBP9.24□□□□□ -0.93
CD44-204ENST00000279452 XPCQ01831 940 aaPredicted RBP9.24□□□□□ -0.93
CD44-204ENST00000279452 TIMELESSQ9UNS1 1208 aa9.24□□□□□ -0.93
CD44-204ENST00000279452 AHDC1Q5TGY3 1603 aaPredicted RBP9.23□□□□□ -0.93
CD44-204ENST00000279452 TULP4Q9NRJ4 1543 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 FOXO3O43524 673 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 PMFBP1Q8TBY8 1022 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 CDK19Q9BWU1 502 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 PHF8Q9UPP1 1060 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 NPHP3Q7Z494 1330 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 GPRASP1Q5JY77 1395 aa9.23□□□□□ -0.93
CD44-204ENST00000279452 ANKARQ7Z5J8 1434 aa9.22□□□□□ -0.93
CD44-204ENST00000279452 PLEKHG5O94827 1062 aa9.22□□□□□ -0.93
CD44-204ENST00000279452 CABP2Q9NPB3 220 aa9.22□□□□□ -0.93
CD44-204ENST00000279452 COL16A1Q07092 1604 aaPredicted RBP9.22□□□□□ -0.93
CD44-204ENST00000279452 KIF1AQ12756 1690 aa9.22□□□□□ -0.93
CD44-204ENST00000279452 JCADQ9P266 1359 aa9.22□□□□□ -0.93
CD44-204ENST00000279452 NHSL1Q5SYE7 1610 aa9.21□□□□□ -0.93
CD44-204ENST00000279452 NUTM2BA6NNL0 878 aaPredicted RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 NUTM2EB1AL46 878 aaPredicted RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 MEX3CQ5U5Q3 659 aaKnown RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 LMOD2Q6P5Q4 547 aa9.21□□□□□ -0.94
CD44-204ENST00000279452 NUTM2AQ8IVF1 878 aaPredicted RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 NGDNQ8NEJ9 315 aaKnown RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 NUDT16Q96DE0 195 aaKnown RBP9.21□□□□□ -0.94
CD44-204ENST00000279452 EVC2Q86UK5 1308 aa9.21□□□□□ -0.94
CD44-204ENST00000279452 PSME1Q06323 249 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 LRRC59Q96AG4 307 aaKnown RBP9.2□□□□□ -0.94
CD44-204ENST00000279452 PRR36Q9H6K5 1346 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 USP47Q96K76 1375 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 DISP3Q9P2K9 1392 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 ATP7BP35670 1465 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 USP32Q8NFA0 1604 aa9.2□□□□□ -0.94
CD44-204ENST00000279452 KRT28Q7Z3Y7 464 aa9.19□□□□□ -0.94
CD44-204ENST00000279452 MED1Q15648 1581 aaPredicted RBP9.19□□□□□ -0.94
CD44-204ENST00000279452 ST20-MTHFSA0A0A6YYL1 179 aa9.18□□□□□ -0.94
CD44-204ENST00000279452 PAK3O75914 559 aaPredicted RBP9.18□□□□□ -0.94
CD44-204ENST00000279452 HAP1P54257 671 aaPredicted RBP9.18□□□□□ -0.94
CD44-204ENST00000279452 SOS2Q07890 1332 aaPredicted RBP9.18□□□□□ -0.94
CD44-204ENST00000279452 ITSN1Q15811 1721 aa9.18□□□□□ -0.94
CD44-204ENST00000279452 PPIP5K1Q6PFW1 1433 aa9.18□□□□□ -0.94
CD44-204ENST00000279452 RGPD8O14715 1765 aaPredicted RBP9.17□□□□□ -0.94
CD44-204ENST00000279452 PXDNQ92626 1479 aa9.17□□□□□ -0.94
CD44-204ENST00000279452 PNPLA6Q8IY17 1366 aa9.17□□□□□ -0.94
CD44-204ENST00000279452 SPATA31A6Q5VVP1 1343 aa9.17□□□□□ -0.94
CD44-204ENST00000279452 CCDC61Q9Y6R9 512 aa9.17□□□□□ -0.94
CD44-204ENST00000279452 TMC1Q8TDI8 760 aa9.16□□□□□ -0.94
CD44-204ENST00000279452 POLR3GLQ9BT43 218 aa9.16□□□□□ -0.94
CD44-204ENST00000279452 SHPRHQ149N8 1683 aa9.16□□□□□ -0.94
CD44-204ENST00000279452 TNS3Q68CZ2 1445 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 ATAD2Q6PL18 1390 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 SBNO2Q9Y2G9 1366 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 ACEP12821 1306 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 ADAMTS2O95450 1211 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 TMF1P82094 1093 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 CABP1Q9NZU7 370 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 TOPAZ1Q8N9V7 1692 aa9.15□□□□□ -0.94
CD44-204ENST00000279452 SPATA31A3Q5VYP0 1347 aa9.14□□□□□ -0.95
CD44-204ENST00000279452 LRP6O75581 1613 aa9.14□□□□□ -0.95
CD44-204ENST00000279452 EIF4G2P78344 907 aaKnown RBP eCLIP9.14□□□□□ -0.95
CD44-204ENST00000279452 ARHGEF10O15013 1369 aa9.13□□□□□ -0.95
CD44-204ENST00000279452 NUTM2GQ5VZR2 741 aa9.13□□□□□ -0.95
CD44-204ENST00000279452 C8orf37Q96NL8 207 aa9.13□□□□□ -0.95
CD44-204ENST00000279452 SBNO1A3KN83 1393 aa9.12□□□□□ -0.95
CD44-204ENST00000279452 PLEKHG3A1L390 1219 aa9.12□□□□□ -0.95
CD44-204ENST00000279452 SLC24A1O60721 1099 aa9.12□□□□□ -0.95
CD44-204ENST00000279452 HSPA5P11021 654 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms