RNA–Protein interactions for RNA: ENST00000277198.6

C9orf3-201, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2 BASIC

Gene C9orf3, Length 1,966 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-201ENST00000277198 PROSER2Q86WR7 435 aaPredicted RBP17.35■□□□□ 0.37
C9orf3-201ENST00000277198 KDM2AQ9Y2K7 1162 aa17.35■□□□□ 0.37
C9orf3-201ENST00000277198 LAMC1P11047 1609 aa17.34■□□□□ 0.37
C9orf3-201ENST00000277198 METP08581 1390 aa17.34■□□□□ 0.37
C9orf3-201ENST00000277198 SETBP1Q9Y6X0 1596 aa17.33■□□□□ 0.37
C9orf3-201ENST00000277198 CHD2O14647 1828 aaKnown RBP17.33■□□□□ 0.36
C9orf3-201ENST00000277198 TRPM1Q7Z4N2 1603 aa17.32■□□□□ 0.36
C9orf3-201ENST00000277198 NKTRP30414 1462 aaKnown RBP17.32■□□□□ 0.36
C9orf3-201ENST00000277198 TOM1O60784 492 aa17.32■□□□□ 0.36
C9orf3-201ENST00000277198 INSRP06213 1382 aa17.32■□□□□ 0.36
C9orf3-201ENST00000277198 DIP2AQ14689 1571 aa17.31■□□□□ 0.36
C9orf3-201ENST00000277198 B4GALNT3Q6L9W6 998 aa17.31■□□□□ 0.36
C9orf3-201ENST00000277198 PARD3Q8TEW0 1356 aa17.3■□□□□ 0.36
C9orf3-201ENST00000277198 NLRP13Q86W25 1043 aa17.29■□□□□ 0.36
C9orf3-201ENST00000277198 AMOTL2Q9Y2J4 779 aa17.29■□□□□ 0.36
C9orf3-201ENST00000277198 ADGRF5Q8IZF2 1346 aa17.29■□□□□ 0.36
C9orf3-201ENST00000277198 PPLO60437 1756 aa17.29■□□□□ 0.36
C9orf3-201ENST00000277198 HSPA1LP34931 641 aa17.28■□□□□ 0.36
C9orf3-201ENST00000277198 MSH5O43196 834 aa17.28■□□□□ 0.36
C9orf3-201ENST00000277198 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
C9orf3-201ENST00000277198 PIK3R4Q99570 1358 aa17.26■□□□□ 0.35
C9orf3-201ENST00000277198 RPGRIP1LQ68CZ1 1315 aa17.26■□□□□ 0.35
C9orf3-201ENST00000277198 VGFO15240 615 aaPredicted RBP17.26■□□□□ 0.35
C9orf3-201ENST00000277198 XRN1Q8IZH2 1706 aaKnown RBP17.25■□□□□ 0.35
C9orf3-201ENST00000277198 PER1O15534 1290 aaPredicted RBP17.25■□□□□ 0.35
C9orf3-201ENST00000277198 STAC3Q96MF2 364 aa17.25■□□□□ 0.35
C9orf3-201ENST00000277198 SETD1AO15047 1707 aaKnown RBP17.25■□□□□ 0.35
C9orf3-201ENST00000277198 IFT172Q9UG01 1749 aa17.23■□□□□ 0.35
C9orf3-201ENST00000277198 C14orf37Q86TY3 774 aa17.22■□□□□ 0.35
C9orf3-201ENST00000277198 TESK2Q96S53 571 aa17.22■□□□□ 0.35
C9orf3-201ENST00000277198 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
C9orf3-201ENST00000277198 MSH6P52701 1360 aa17.22■□□□□ 0.35
C9orf3-201ENST00000277198 NBPF1Q3BBV0 1214 aa17.21■□□□□ 0.35
C9orf3-201ENST00000277198 CNGB1Q14028 1251 aaPredicted RBP17.2■□□□□ 0.34
C9orf3-201ENST00000277198 TMF1P82094 1093 aa17.2■□□□□ 0.34
C9orf3-201ENST00000277198 ASXL1Q8IXJ9 1541 aa17.2■□□□□ 0.34
C9orf3-201ENST00000277198 ROBO2Q9HCK4 1378 aa17.19■□□□□ 0.34
C9orf3-201ENST00000277198 ERICH6Q7L0X2 663 aa17.19■□□□□ 0.34
C9orf3-201ENST00000277198 PIK3C2GO75747 1445 aa17.19■□□□□ 0.34
C9orf3-201ENST00000277198 TMEM132EQ6IEE7 984 aa17.19■□□□□ 0.34
C9orf3-201ENST00000277198 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-201ENST00000277198 SLAIN2Q9P270 581 aa17.17■□□□□ 0.34
C9orf3-201ENST00000277198 ROBO1Q9Y6N7 1651 aa17.16■□□□□ 0.34
C9orf3-201ENST00000277198 C19orf44Q9H6X5 657 aa17.16■□□□□ 0.34
C9orf3-201ENST00000277198 STK26Q9P289 416 aa17.16■□□□□ 0.34
C9orf3-201ENST00000277198 RRP1P56182 461 aaKnown RBP17.15■□□□□ 0.34
C9orf3-201ENST00000277198 DISP3Q9P2K9 1392 aa17.15■□□□□ 0.34
C9orf3-201ENST00000277198 FAM135BQ49AJ0 1406 aa17.15■□□□□ 0.34
C9orf3-201ENST00000277198 NCOA3Q9Y6Q9 1424 aa17.15■□□□□ 0.34
C9orf3-201ENST00000277198 NRXN1Q9ULB1 1477 aa17.15■□□□□ 0.34
C9orf3-201ENST00000277198 CFAP70Q5T0N1 1121 aa17.15■□□□□ 0.34
C9orf3-201ENST00000277198 RCAN3Q9UKA8 241 aa17.14■□□□□ 0.33
C9orf3-201ENST00000277198 BLMP54132 1417 aaPredicted RBP17.14■□□□□ 0.33
C9orf3-201ENST00000277198 PTCH1Q13635 1447 aa17.14■□□□□ 0.33
C9orf3-201ENST00000277198 MYOM2P54296 1465 aa17.14■□□□□ 0.33
C9orf3-201ENST00000277198 NALCNQ8IZF0 1738 aa17.13■□□□□ 0.33
C9orf3-201ENST00000277198 ATF3P18847 181 aa17.12■□□□□ 0.33
C9orf3-201ENST00000277198 CDCA8Q53HL2 280 aa17.12■□□□□ 0.33
C9orf3-201ENST00000277198 PANK3Q9H999 370 aa17.12■□□□□ 0.33
C9orf3-201ENST00000277198 ADGRL3Q9HAR2 1447 aa17.12■□□□□ 0.33
C9orf3-201ENST00000277198 PLEKHH1Q9ULM0 1364 aa17.11■□□□□ 0.33
C9orf3-201ENST00000277198 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
C9orf3-201ENST00000277198 CADPS2Q86UW7 1296 aa17.11■□□□□ 0.33
C9orf3-201ENST00000277198 C14orf93Q9H972 538 aaKnown RBP17.11■□□□□ 0.33
C9orf3-201ENST00000277198 SLC24A1O60721 1099 aa17.09■□□□□ 0.33
C9orf3-201ENST00000277198 MST1RQ04912 1400 aa17.09■□□□□ 0.33
C9orf3-201ENST00000277198 YTHDC2Q9H6S0 1430 aaKnown RBP17.08■□□□□ 0.32
C9orf3-201ENST00000277198 BRINP3Q76B58 766 aa17.08■□□□□ 0.32
C9orf3-201ENST00000277198 DCCP43146 1447 aa17.07■□□□□ 0.32
C9orf3-201ENST00000277198 TECPR2O15040 1411 aa17.07■□□□□ 0.32
C9orf3-201ENST00000277198 DDX17Q92841 729 aaKnown RBP17.06■□□□□ 0.32
C9orf3-201ENST00000277198 CC2D1BQ5T0F9 858 aaKnown RBP17.06■□□□□ 0.32
C9orf3-201ENST00000277198 ABCC11Q96J66 1382 aa17.05■□□□□ 0.32
C9orf3-201ENST00000277198 NPC1L1Q9UHC9 1359 aa17.05■□□□□ 0.32
C9orf3-201ENST00000277198 TCERG1O14776 1098 aaKnown RBP17.05■□□□□ 0.32
C9orf3-201ENST00000277198 ADGRB1O14514 1584 aa17.05■□□□□ 0.32
C9orf3-201ENST00000277198 MED1Q15648 1581 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-201ENST00000277198 ANP32AP39687 249 aaKnown RBP17.04■□□□□ 0.32
C9orf3-201ENST00000277198 NOP58Q9Y2X3 529 aaKnown RBP17.04■□□□□ 0.32
C9orf3-201ENST00000277198 SAFB2Q14151 953 aaKnown RBP eCLIP17.04■□□□□ 0.32
C9orf3-201ENST00000277198 EIF3AQ14152 1382 aaKnown RBP17.03■□□□□ 0.32
C9orf3-201ENST00000277198 KNSTRNQ9Y448 316 aa17.03■□□□□ 0.32
C9orf3-201ENST00000277198 PHLPP1O60346 1717 aa17.03■□□□□ 0.32
C9orf3-201ENST00000277198 KNDC1Q76NI1 1749 aa17.03■□□□□ 0.32
C9orf3-201ENST00000277198 NUTM2FA1L443 756 aa17.02■□□□□ 0.32
C9orf3-201ENST00000277198 C1orf167Q5SNV9 1468 aa17.02■□□□□ 0.32
C9orf3-201ENST00000277198 MS4A1P11836 297 aa17.02■□□□□ 0.31
C9orf3-201ENST00000277198 EXOC6Q8TAG9 804 aa17.02■□□□□ 0.31
C9orf3-201ENST00000277198 ORAI2Q96SN7 254 aa17.02■□□□□ 0.31
C9orf3-201ENST00000277198 COL16A1Q07092 1604 aaPredicted RBP17.01■□□□□ 0.31
C9orf3-201ENST00000277198 ILDR2Q71H61 639 aa17.01■□□□□ 0.31
C9orf3-201ENST00000277198 IPO9Q96P70 1041 aaKnown RBP17.01■□□□□ 0.31
C9orf3-201ENST00000277198 PRAM1Q96QH2 718 aa17■□□□□ 0.31
C9orf3-201ENST00000277198 TRAK1Q9UPV9 953 aa17■□□□□ 0.31
C9orf3-201ENST00000277198 KIAA1210Q9ULL0 1709 aa17■□□□□ 0.31
C9orf3-201ENST00000277198 AMER1Q5JTC6 1135 aaPredicted RBP17■□□□□ 0.31
C9orf3-201ENST00000277198 AHDC1Q5TGY3 1603 aaPredicted RBP16.99■□□□□ 0.31
C9orf3-201ENST00000277198 CDCA7LQ96GN5 454 aa16.98■□□□□ 0.31
C9orf3-201ENST00000277198 CDC42BPGQ6DT37 1551 aa16.98■□□□□ 0.31
C9orf3-201ENST00000277198 SENP3-EIF4A1A0A087X0R7 540 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms