RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ATF3P18847 181 aa13.92□□□□□ -0.18
USP53-201ENST00000274030 IGF1RP08069 1367 aa13.92□□□□□ -0.18
USP53-201ENST00000274030 CCDC27Q2M243 656 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 TCP11L2Q8N4U5 519 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 ERICH2A1L162 156 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 HOMER1Q86YM7 354 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 ROCK1Q13464 1354 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 C1orf115Q9H7X2 142 aa13.91□□□□□ -0.18
USP53-201ENST00000274030 ERC2O15083 957 aa13.9□□□□□ -0.18
USP53-201ENST00000274030 WASHC2AQ641Q2 1341 aa13.9□□□□□ -0.18
USP53-201ENST00000274030 FGD6Q6ZV73 1430 aa13.9□□□□□ -0.18
USP53-201ENST00000274030 RALYLQ86SE5 291 aaKnown RBP13.89□□□□□ -0.19
USP53-201ENST00000274030 IPO7O95373 1038 aaKnown RBP13.89□□□□□ -0.19
USP53-201ENST00000274030 FBXO3Q9UK99 471 aa13.89□□□□□ -0.19
USP53-201ENST00000274030 RBM33Q96EV2 1170 aaKnown RBP13.89□□□□□ -0.19
USP53-201ENST00000274030 HSP90AB4PQ58FF6 505 aa13.89□□□□□ -0.19
USP53-201ENST00000274030 GAPVD1Q14C86 1478 aa13.89□□□□□ -0.19
USP53-201ENST00000274030 SASS6Q6UVJ0 657 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 SURF6O75683 361 aaKnown RBP13.88□□□□□ -0.19
USP53-201ENST00000274030 ABTB2Q8N961 1025 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 PRKAR2BP31323 418 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 NBPF1Q3BBV0 1214 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 RNF214Q8ND24 703 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 CCDC47Q96A33 483 aaKnown RBP13.88□□□□□ -0.19
USP53-201ENST00000274030 FAM13BQ9NYF5 915 aa13.88□□□□□ -0.19
USP53-201ENST00000274030 FANCIQ9NVI1 1328 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 EXOSC9Q06265 439 aaKnown RBP13.87□□□□□ -0.19
USP53-201ENST00000274030 ANKRD20A12PQ8NF67 263 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 ANKRD50Q9ULJ7 1429 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 PATL2C9JE40 543 aaKnown RBP13.87□□□□□ -0.19
USP53-201ENST00000274030 FGD5Q6ZNL6 1462 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 FSD1Q9BTV5 496 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 NUCB2P80303 420 aa13.87□□□□□ -0.19
USP53-201ENST00000274030 CCDC73Q6ZRK6 1079 aa13.86□□□□□ -0.19
USP53-201ENST00000274030 TSR2Q969E8 191 aaKnown RBP13.86□□□□□ -0.19
USP53-201ENST00000274030 DNAJC2Q99543 621 aaKnown RBP13.86□□□□□ -0.19
USP53-201ENST00000274030 CDC45O75419 566 aa13.86□□□□□ -0.19
USP53-201ENST00000274030 ATP2B1P20020 1258 aa13.86□□□□□ -0.19
USP53-201ENST00000274030 SAFBQ15424 915 aaKnown RBP eCLIP13.86□□□□□ -0.19
USP53-201ENST00000274030 ESCO1Q5FWF5 840 aa13.86□□□□□ -0.19
USP53-201ENST00000274030 NFKBIBQ15653 356 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 CNTLNQ9NXG0 1405 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 AQRO60306 1485 aaKnown RBP eCLIP13.85□□□□□ -0.19
USP53-201ENST00000274030 CCDC70Q6NSX1 233 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 HOOK1Q9UJC3 728 aaKnown RBP13.85□□□□□ -0.19
USP53-201ENST00000274030 PPP2R1AP30153 589 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 CCDC43Q96MW1 224 aaKnown RBP13.85□□□□□ -0.19
USP53-201ENST00000274030 RSPH6AQ9H0K4 717 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 SLC12A5Q9H2X9 1139 aa13.85□□□□□ -0.19
USP53-201ENST00000274030 TXNDC2Q86VQ3 553 aa13.84□□□□□ -0.19
USP53-201ENST00000274030 CLASRPQ8N2M8 674 aaKnown RBP13.84□□□□□ -0.19
USP53-201ENST00000274030 PRAM1Q96QH2 718 aa13.84□□□□□ -0.19
USP53-201ENST00000274030 IFT57Q9NWB7 429 aa13.84□□□□□ -0.19
USP53-201ENST00000274030 RBM42Q9BTD8 480 aaKnown RBP13.84□□□□□ -0.19
USP53-201ENST00000274030 NAP1L1P55209 391 aaKnown RBP13.84□□□□□ -0.19
USP53-201ENST00000274030 SMARCA4P51532 1647 aa13.84□□□□□ -0.19
USP53-201ENST00000274030 STRN4Q9NRL3 753 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 MIA2Q96PC5 1412 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 BCAR3O75815 825 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 NEK4P51957 841 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 VSIG10Q8N0Z9 540 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 SDF4Q9BRK5 362 aa13.83□□□□□ -0.2
USP53-201ENST00000274030 PDZRN3Q9UPQ7 1066 aa13.82□□□□□ -0.2
USP53-201ENST00000274030 PRDM2Q13029 1718 aa13.82□□□□□ -0.2
USP53-201ENST00000274030 TWISTNBQ3B726 338 aaPredicted RBP13.82□□□□□ -0.2
USP53-201ENST00000274030 CNTROBQ8N137 903 aa13.82□□□□□ -0.2
USP53-201ENST00000274030 CCDC30Q5VVM6 783 aa13.82□□□□□ -0.2
USP53-201ENST00000274030 ZNF771Q7L3S4 317 aaPredicted RBP13.82□□□□□ -0.2
USP53-201ENST00000274030 GPS2Q13227 327 aa13.81□□□□□ -0.2
USP53-201ENST00000274030 NOB1Q9ULX3 412 aaKnown RBP13.81□□□□□ -0.2
USP53-201ENST00000274030 STK11IPQ8N1F8 1099 aa13.81□□□□□ -0.2
USP53-201ENST00000274030 RRP12Q5JTH9 1297 aaKnown RBP13.81□□□□□ -0.2
USP53-201ENST00000274030 PDILTQ8N807 584 aa13.81□□□□□ -0.2
USP53-201ENST00000274030 GNAI3P08754 354 aa13.8□□□□□ -0.2
USP53-201ENST00000274030 IKQ13123 557 aaPredicted RBP13.8□□□□□ -0.2
USP53-201ENST00000274030 SLC4A2P04920 1241 aa13.8□□□□□ -0.2
USP53-201ENST00000274030 CEBPZQ03701 1054 aaKnown RBP13.8□□□□□ -0.2
USP53-201ENST00000274030 SULT6B1Q6IMI4 303 aa13.8□□□□□ -0.2
USP53-201ENST00000274030 FMNL2Q96PY5 1086 aa13.8□□□□□ -0.2
USP53-201ENST00000274030 TTLL5Q6EMB2 1281 aa13.8□□□□□ -0.2
USP53-201ENST00000274030 CAVIN1Q6NZI2 390 aaKnown RBP13.8□□□□□ -0.2
USP53-201ENST00000274030 BRD4O60885 1362 aaPredicted RBP13.79□□□□□ -0.2
USP53-201ENST00000274030 FAM43AQ8N2R8 423 aa13.79□□□□□ -0.2
USP53-201ENST00000274030 SIL1Q9H173 461 aa13.79□□□□□ -0.2
USP53-201ENST00000274030 CWC22Q9HCG8 908 aaKnown RBP13.79□□□□□ -0.2
USP53-201ENST00000274030 MAP4K4O95819 1239 aaPredicted RBP13.79□□□□□ -0.2
USP53-201ENST00000274030 GAS2L2Q8NHY3 880 aa13.79□□□□□ -0.2
USP53-201ENST00000274030 CABP1Q9NZU7 370 aa13.79□□□□□ -0.2
USP53-201ENST00000274030 LRRC9Q6ZRR7 1453 aa13.78□□□□□ -0.2
USP53-201ENST00000274030 PROSER2Q86WR7 435 aaPredicted RBP13.78□□□□□ -0.2
USP53-201ENST00000274030 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.78□□□□□ -0.2
USP53-201ENST00000274030 NINLQ9Y2I6 1382 aa13.78□□□□□ -0.2
USP53-201ENST00000274030 NCOA2Q15596 1464 aa13.78□□□□□ -0.2
USP53-201ENST00000274030 PSMA5P28066 241 aa13.78□□□□□ -0.2
USP53-201ENST00000274030 PRPF40AO75400 957 aaKnown RBP13.77□□□□□ -0.2
USP53-201ENST00000274030 NASPP49321 788 aaPredicted RBP13.77□□□□□ -0.2
USP53-201ENST00000274030 STAC3Q96MF2 364 aa13.77□□□□□ -0.2
USP53-201ENST00000274030 GPRASP1Q5JY77 1395 aa13.77□□□□□ -0.2
USP53-201ENST00000274030 HDGFL1Q5TGJ6 251 aa13.77□□□□□ -0.2
USP53-201ENST00000274030 PLEKHO1Q53GL0 409 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms