RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ATF3P18847 181 aa18.17■□□□□ 0.5
SS18-202ENST00000269138 PIP4K2BP78356 416 aa18.17■□□□□ 0.5
SS18-202ENST00000269138 CARD11Q9BXL7 1154 aa18.17■□□□□ 0.5
SS18-202ENST00000269138 NALCNQ8IZF0 1738 aa18.16■□□□□ 0.5
SS18-202ENST00000269138 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
SS18-202ENST00000269138 CADPS2Q86UW7 1296 aa18.15■□□□□ 0.5
SS18-202ENST00000269138 HIRIP3Q9BW71 556 aaPredicted RBP18.14■□□□□ 0.49
SS18-202ENST00000269138 SLAIN2Q9P270 581 aa18.14■□□□□ 0.49
SS18-202ENST00000269138 MINK1Q8N4C8 1332 aaPredicted RBP18.14■□□□□ 0.49
SS18-202ENST00000269138 SCAF1Q9H7N4 1312 aaKnown RBP18.14■□□□□ 0.49
SS18-202ENST00000269138 ARHGEF28Q8N1W1 1705 aaKnown RBP18.13■□□□□ 0.49
SS18-202ENST00000269138 DCCP43146 1447 aa18.13■□□□□ 0.49
SS18-202ENST00000269138 CENPJQ9HC77 1338 aaPredicted RBP18.11■□□□□ 0.49
SS18-202ENST00000269138 ILDR1Q86SU0 546 aaPredicted RBP18.11■□□□□ 0.49
SS18-202ENST00000269138 MST1RQ04912 1400 aa18.1■□□□□ 0.49
SS18-202ENST00000269138 NUTM2FA1L443 756 aa18.1■□□□□ 0.49
SS18-202ENST00000269138 CDC42BPGQ6DT37 1551 aa18.08■□□□□ 0.48
SS18-202ENST00000269138 C1orf167Q5SNV9 1468 aa18.07■□□□□ 0.48
SS18-202ENST00000269138 WASLO00401 505 aaPredicted RBP18.07■□□□□ 0.48
SS18-202ENST00000269138 EIF3AQ14152 1382 aaKnown RBP18.06■□□□□ 0.48
SS18-202ENST00000269138 BRINP3Q76B58 766 aa18.05■□□□□ 0.48
SS18-202ENST00000269138 ORAI2Q96SN7 254 aa18.05■□□□□ 0.48
SS18-202ENST00000269138 CDK19Q9BWU1 502 aa18.04■□□□□ 0.48
SS18-202ENST00000269138 ADGRB2O60241 1585 aa18.04■□□□□ 0.48
SS18-202ENST00000269138 ST20-MTHFSA0A0A6YYL1 179 aa18.03■□□□□ 0.48
SS18-202ENST00000269138 USP47Q96K76 1375 aa18.03■□□□□ 0.48
SS18-202ENST00000269138 QRICH2Q9H0J4 1663 aa18.02■□□□□ 0.48
SS18-202ENST00000269138 ROBO1Q9Y6N7 1651 aa18.02■□□□□ 0.48
SS18-202ENST00000269138 PRR36Q9H6K5 1346 aa18.02■□□□□ 0.48
SS18-202ENST00000269138 FMN2Q9NZ56 1722 aa18.02■□□□□ 0.48
SS18-202ENST00000269138 HSPA1LP34931 641 aa18.02■□□□□ 0.47
SS18-202ENST00000269138 ESCO1Q5FWF5 840 aa18.02■□□□□ 0.47
SS18-202ENST00000269138 DDX17Q92841 729 aaKnown RBP18.01■□□□□ 0.47
SS18-202ENST00000269138 CABP2Q9NPB3 220 aa18■□□□□ 0.47
SS18-202ENST00000269138 NUDT16Q96DE0 195 aaKnown RBP17.99■□□□□ 0.47
SS18-202ENST00000269138 TESK2Q96S53 571 aa17.99■□□□□ 0.47
SS18-202ENST00000269138 TULP4Q9NRJ4 1543 aa17.99■□□□□ 0.47
SS18-202ENST00000269138 SRPK2P78362 688 aaKnown RBP17.98■□□□□ 0.47
SS18-202ENST00000269138 USP32Q8NFA0 1604 aa17.97■□□□□ 0.47
SS18-202ENST00000269138 EVC2Q86UK5 1308 aa17.97■□□□□ 0.47
SS18-202ENST00000269138 SBNO2Q9Y2G9 1366 aa17.97■□□□□ 0.47
SS18-202ENST00000269138 ANKARQ7Z5J8 1434 aa17.97■□□□□ 0.47
SS18-202ENST00000269138 HSPA5P11021 654 aaKnown RBP17.96■□□□□ 0.47
SS18-202ENST00000269138 PMFBP1Q8TBY8 1022 aa17.96■□□□□ 0.47
SS18-202ENST00000269138 PHF8Q9UPP1 1060 aa17.96■□□□□ 0.47
SS18-202ENST00000269138 ATP7BP35670 1465 aa17.95■□□□□ 0.46
SS18-202ENST00000269138 FOXO3O43524 673 aa17.95■□□□□ 0.46
SS18-202ENST00000269138 RGPD8O14715 1765 aaPredicted RBP17.94■□□□□ 0.46
SS18-202ENST00000269138 EIF4G2P78344 907 aaKnown RBP eCLIP17.94■□□□□ 0.46
SS18-202ENST00000269138 XPCQ01831 940 aaPredicted RBP17.93■□□□□ 0.46
SS18-202ENST00000269138 CCDC61Q9Y6R9 512 aa17.93■□□□□ 0.46
SS18-202ENST00000269138 AHDC1Q5TGY3 1603 aaPredicted RBP17.91■□□□□ 0.46
SS18-202ENST00000269138 DISP3Q9P2K9 1392 aa17.91■□□□□ 0.46
SS18-202ENST00000269138 PHLPP1O60346 1717 aa17.9■□□□□ 0.46
SS18-202ENST00000269138 NPHP3Q7Z494 1330 aa17.89■□□□□ 0.45
SS18-202ENST00000269138 CABP1Q9NZU7 370 aa17.89■□□□□ 0.45
SS18-202ENST00000269138 NHSL1Q5SYE7 1610 aa17.89■□□□□ 0.45
SS18-202ENST00000269138 SOS2Q07890 1332 aaPredicted RBP17.88■□□□□ 0.45
SS18-202ENST00000269138 PLEKHG3A1L390 1219 aa17.88■□□□□ 0.45
SS18-202ENST00000269138 TMF1P82094 1093 aa17.88■□□□□ 0.45
SS18-202ENST00000269138 KRT28Q7Z3Y7 464 aa17.88■□□□□ 0.45
SS18-202ENST00000269138 NGDNQ8NEJ9 315 aaKnown RBP17.88■□□□□ 0.45
SS18-202ENST00000269138 PPIP5K1Q6PFW1 1433 aa17.88■□□□□ 0.45
SS18-202ENST00000269138 COL16A1Q07092 1604 aaPredicted RBP17.88■□□□□ 0.45
SS18-202ENST00000269138 ACEP12821 1306 aa17.87■□□□□ 0.45
SS18-202ENST00000269138 SLC24A1O60721 1099 aa17.87■□□□□ 0.45
SS18-202ENST00000269138 PSME1Q06323 249 aa17.87■□□□□ 0.45
SS18-202ENST00000269138 PXDNQ92626 1479 aa17.87■□□□□ 0.45
SS18-202ENST00000269138 KIF1AQ12756 1690 aa17.86■□□□□ 0.45
SS18-202ENST00000269138 TOPAZ1Q8N9V7 1692 aa17.86■□□□□ 0.45
SS18-202ENST00000269138 ATAD2Q6PL18 1390 aa17.85■□□□□ 0.45
SS18-202ENST00000269138 PUS7Q96PZ0 661 aaKnown RBP17.85■□□□□ 0.45
SS18-202ENST00000269138 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
SS18-202ENST00000269138 TMC1Q8TDI8 760 aa17.84■□□□□ 0.45
SS18-202ENST00000269138 LRRC59Q96AG4 307 aaKnown RBP17.84■□□□□ 0.45
SS18-202ENST00000269138 SLC12A5Q9H2X9 1139 aa17.84■□□□□ 0.45
SS18-202ENST00000269138 POLR3AO14802 1390 aaPredicted RBP17.84■□□□□ 0.45
SS18-202ENST00000269138 C11orf95C9JLR9 678 aaPredicted RBP17.83■□□□□ 0.45
SS18-202ENST00000269138 ITSN1Q15811 1721 aa17.83■□□□□ 0.44
SS18-202ENST00000269138 JCADQ9P266 1359 aa17.82■□□□□ 0.44
SS18-202ENST00000269138 SPATA31A3Q5VYP0 1347 aa17.8■□□□□ 0.44
SS18-202ENST00000269138 CDCA8Q53HL2 280 aa17.8■□□□□ 0.44
SS18-202ENST00000269138 POLR3GLQ9BT43 218 aa17.8■□□□□ 0.44
SS18-202ENST00000269138 SBNO1A3KN83 1393 aa17.79■□□□□ 0.44
SS18-202ENST00000269138 PNPLA6Q8IY17 1366 aa17.79■□□□□ 0.44
SS18-202ENST00000269138 PAK3O75914 559 aaPredicted RBP17.78■□□□□ 0.44
SS18-202ENST00000269138 LMOD2Q6P5Q4 547 aa17.78■□□□□ 0.44
SS18-202ENST00000269138 CD163L1Q9NR16 1453 aa17.77■□□□□ 0.44
SS18-202ENST00000269138 PLEKHG5O94827 1062 aa17.77■□□□□ 0.43
SS18-202ENST00000269138 CPSF1Q10570 1443 aaKnown RBP17.77■□□□□ 0.43
SS18-202ENST00000269138 TNS3Q68CZ2 1445 aa17.77■□□□□ 0.43
SS18-202ENST00000269138 USP6P35125 1406 aa17.76■□□□□ 0.43
SS18-202ENST00000269138 ZNF692Q9BU19 519 aaPredicted RBP17.76■□□□□ 0.43
SS18-202ENST00000269138 TRPM3Q9HCF6 1732 aaPredicted RBP17.75■□□□□ 0.43
SS18-202ENST00000269138 NUTM2BA6NNL0 878 aaPredicted RBP17.75■□□□□ 0.43
SS18-202ENST00000269138 NUTM2EB1AL46 878 aaPredicted RBP17.75■□□□□ 0.43
SS18-202ENST00000269138 NUTM2AQ8IVF1 878 aaPredicted RBP17.75■□□□□ 0.43
SS18-202ENST00000269138 KTN1Q86UP2 1357 aaKnown RBP17.75■□□□□ 0.43
SS18-202ENST00000269138 NUTM2GQ5VZR2 741 aa17.74■□□□□ 0.43
SS18-202ENST00000269138 HDGFL2Q7Z4V5 671 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms