RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ERICH3Q5RHP9 1530 aa23.19■■□□□ 1.3
UPF1-201ENST00000262803 PLEKHH2Q8IVE3 1493 aa23.19■■□□□ 1.3
UPF1-201ENST00000262803 HSP90AA2PQ14568 343 aaPredicted RBP23.19■■□□□ 1.3
UPF1-201ENST00000262803 HMOX1P09601 288 aa23.19■■□□□ 1.3
UPF1-201ENST00000262803 CWC22Q9HCG8 908 aaKnown RBP23.19■■□□□ 1.3
UPF1-201ENST00000262803 TSPYL4Q9UJ04 414 aa23.18■■□□□ 1.3
UPF1-201ENST00000262803 MCTP1Q6DN14 999 aa23.18■■□□□ 1.3
UPF1-201ENST00000262803 NINLQ9Y2I6 1382 aa23.18■■□□□ 1.3
UPF1-201ENST00000262803 DCAF8L1A6NGE4 600 aa23.18■■□□□ 1.3
UPF1-201ENST00000262803 BRMS1Q9HCU9 246 aa23.17■■□□□ 1.3
UPF1-201ENST00000262803 DHX16O60231 1041 aaKnown RBP23.17■■□□□ 1.3
UPF1-201ENST00000262803 GAS2L2Q8NHY3 880 aa23.16■■□□□ 1.3
UPF1-201ENST00000262803 NFKBIBQ15653 356 aa23.16■■□□□ 1.3
UPF1-201ENST00000262803 SMG6Q86US8 1419 aaKnown RBP23.16■■□□□ 1.3
UPF1-201ENST00000262803 AQRO60306 1485 aaKnown RBP eCLIP23.16■■□□□ 1.36e-7■■■■■ 31.8
UPF1-201ENST00000262803 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
UPF1-201ENST00000262803 XBP1P17861 261 aa23.16■■□□□ 1.3
UPF1-201ENST00000262803 MTHFSP49914 203 aa23.15■■□□□ 1.3
UPF1-201ENST00000262803 TNNT3P45378 269 aaPredicted RBP23.15■■□□□ 1.3
UPF1-201ENST00000262803 TMEM132EQ6IEE7 984 aa23.15■■□□□ 1.3
UPF1-201ENST00000262803 TCP11L2Q8N4U5 519 aa23.15■■□□□ 1.3
UPF1-201ENST00000262803 CFTRP13569 1480 aa23.15■■□□□ 1.3
UPF1-201ENST00000262803 CABP2Q9NPB3 220 aa23.14■■□□□ 1.3
UPF1-201ENST00000262803 NCAPD3P42695 1498 aa23.14■■□□□ 1.3
UPF1-201ENST00000262803 PRDM2Q13029 1718 aa23.14■■□□□ 1.3
UPF1-201ENST00000262803 PPP2R1AP30153 589 aa23.14■■□□□ 1.29
UPF1-201ENST00000262803 NUCB2P80303 420 aa23.14■■□□□ 1.29
UPF1-201ENST00000262803 SYTL4Q96C24 671 aaPredicted RBP23.14■■□□□ 1.29
UPF1-201ENST00000262803 RALYLQ86SE5 291 aaKnown RBP23.13■■□□□ 1.29
UPF1-201ENST00000262803 SETQ01105 290 aaPredicted RBP23.13■■□□□ 1.29
UPF1-201ENST00000262803 RIC3Q7Z5B4 369 aa23.13■■□□□ 1.29
UPF1-201ENST00000262803 SYNJ2O15056 1496 aa23.13■■□□□ 1.29
UPF1-201ENST00000262803 CFAP70Q5T0N1 1121 aa23.12■■□□□ 1.29
UPF1-201ENST00000262803 PCMTD1Q96MG8 357 aaPredicted RBP23.11■■□□□ 1.29
UPF1-201ENST00000262803 GRIN2BQ13224 1484 aa23.11■■□□□ 1.29
UPF1-201ENST00000262803 HIP1O00291 1037 aa23.11■■□□□ 1.29
UPF1-201ENST00000262803 PSMA5P28066 241 aa23.11■■□□□ 1.29
UPF1-201ENST00000262803 NBPF8Q3BBV2 869 aa23.11■■□□□ 1.29
UPF1-201ENST00000262803 GNAI3P08754 354 aa23.1■■□□□ 1.29
UPF1-201ENST00000262803 NBPF1Q3BBV0 1214 aa23.1■■□□□ 1.29
UPF1-201ENST00000262803 PLEKHO1Q53GL0 409 aaPredicted RBP23.1■■□□□ 1.29
UPF1-201ENST00000262803 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
UPF1-201ENST00000262803 HFM1A2PYH4 1435 aa23.09■■□□□ 1.29
UPF1-201ENST00000262803 RAD21O60216 631 aa23.09■■□□□ 1.29
UPF1-201ENST00000262803 SMC3Q9UQE7 1217 aa23.09■■□□□ 1.29
UPF1-201ENST00000262803 CDR1P51861 262 aa23.08■■□□□ 1.29
UPF1-201ENST00000262803 NLRP2Q9NX02 1062 aa23.08■■□□□ 1.29
UPF1-201ENST00000262803 ARHGAP5Q13017 1502 aa23.08■■□□□ 1.28
UPF1-201ENST00000262803 SART3Q15020 963 aaKnown RBP23.08■■□□□ 1.28
UPF1-201ENST00000262803 TBC1D2BQ9UPU7 963 aa23.08■■□□□ 1.28
UPF1-201ENST00000262803 CDC45O75419 566 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 CCDC73Q6ZRK6 1079 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 FBXW7Q969H0 707 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 UBTFL1P0CB47 393 aaPredicted RBP23.07■■□□□ 1.28
UPF1-201ENST00000262803 CCDC30Q5VVM6 783 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 SLC3A2P08195 630 aaKnown RBP23.07■■□□□ 1.28
UPF1-201ENST00000262803 AFAP1Q8N556 730 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 ERC1Q8IUD2 1116 aa23.07■■□□□ 1.28
UPF1-201ENST00000262803 PNISRQ8TF01 805 aaKnown RBP23.06■■□□□ 1.28
UPF1-201ENST00000262803 VPS37CA5D8V6 355 aaPredicted RBP23.06■■□□□ 1.28
UPF1-201ENST00000262803 PDE4CQ08493 712 aa23.06■■□□□ 1.28
UPF1-201ENST00000262803 BICD2Q8TD16 824 aa23.06■■□□□ 1.28
UPF1-201ENST00000262803 KIF6Q6ZMV9 814 aa23.05■■□□□ 1.28
UPF1-201ENST00000262803 R3HCC1Q9Y3T6 440 aaKnown RBP23.05■■□□□ 1.28
UPF1-201ENST00000262803 AKNAQ7Z591 1439 aa23.04■■□□□ 1.28
UPF1-201ENST00000262803 CNTROBQ8N137 903 aa23.04■■□□□ 1.28
UPF1-201ENST00000262803 KIAA1107Q9UPP5 1409 aa23.03■■□□□ 1.28
UPF1-201ENST00000262803 PRXQ9BXM0 1461 aa23.03■■□□□ 1.28
UPF1-201ENST00000262803 SASS6Q6UVJ0 657 aa23.03■■□□□ 1.28
UPF1-201ENST00000262803 KRI1Q8N9T8 703 aaKnown RBP23.03■■□□□ 1.28
UPF1-201ENST00000262803 NAT10Q9H0A0 1025 aaKnown RBP23.02■■□□□ 1.28
UPF1-201ENST00000262803 RDXP35241 583 aaKnown RBP23.02■■□□□ 1.28
UPF1-201ENST00000262803 EXOSC9Q06265 439 aaKnown RBP23.02■■□□□ 1.28
UPF1-201ENST00000262803 PDE3AQ14432 1141 aa23.02■■□□□ 1.28
UPF1-201ENST00000262803 NLRP6P59044 892 aa23.02■■□□□ 1.28
UPF1-201ENST00000262803 PDZRN3Q9UPQ7 1066 aa23.02■■□□□ 1.28
UPF1-201ENST00000262803 THEMISQ8N1K5 641 aaPredicted RBP23.02■■□□□ 1.28
UPF1-201ENST00000262803 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.02■■□□□ 1.28
UPF1-201ENST00000262803 ZNF692Q9BU19 519 aaPredicted RBP23.01■■□□□ 1.27
UPF1-201ENST00000262803 POGZQ7Z3K3 1410 aa23.01■■□□□ 1.27
UPF1-201ENST00000262803 GNL3LQ9NVN8 582 aaKnown RBP23■■□□□ 1.27
UPF1-201ENST00000262803 ACBD3Q9H3P7 528 aa23■■□□□ 1.27
UPF1-201ENST00000262803 CNKSR2Q8WXI2 1034 aa23■■□□□ 1.27
UPF1-201ENST00000262803 CCAR2Q8N163 923 aaKnown RBP22.99■■□□□ 1.27
UPF1-201ENST00000262803 ZNF592Q92610 1267 aa22.99■■□□□ 1.27
UPF1-201ENST00000262803 MCM2P49736 904 aa22.99■■□□□ 1.27
UPF1-201ENST00000262803 WASHC4Q2M389 1173 aa22.99■■□□□ 1.27
UPF1-201ENST00000262803 CLASRPQ8N2M8 674 aaKnown RBP22.99■■□□□ 1.27
UPF1-201ENST00000262803 PRKAR2BP31323 418 aa22.99■■□□□ 1.27
UPF1-201ENST00000262803 BCAR3O75815 825 aa22.98■■□□□ 1.27
UPF1-201ENST00000262803 OLFM4Q6UX06 510 aa22.98■■□□□ 1.27
UPF1-201ENST00000262803 NEUROD6Q96NK8 337 aa22.98■■□□□ 1.27
UPF1-201ENST00000262803 EFCAB5A4FU69 1503 aa22.98■■□□□ 1.27
UPF1-201ENST00000262803 TATP17735 454 aaPredicted RBP22.97■■□□□ 1.27
UPF1-201ENST00000262803 LETM1O95202 739 aaPredicted RBP22.97■■□□□ 1.27
UPF1-201ENST00000262803 FAM43AQ8N2R8 423 aa22.97■■□□□ 1.27
UPF1-201ENST00000262803 MRE11P49959 708 aa22.97■■□□□ 1.27
UPF1-201ENST00000262803 PIP4K2AP48426 406 aaPredicted RBP22.97■■□□□ 1.27
UPF1-201ENST00000262803 DHX8Q14562 1220 aaKnown RBP22.97■■□□□ 1.27
UPF1-201ENST00000262803 EHBP1L1Q8N3D4 1523 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms