RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NCLP19338 710 aaKnown RBP18.14■□□□□ 0.49
SDC1-201ENST00000254351 HSP90AB1P08238 724 aaKnown RBP18.13■□□□□ 0.49
SDC1-201ENST00000254351 KIAA1211Q6ZU35 1233 aa18.12■□□□□ 0.49
SDC1-201ENST00000254351 TSR2Q969E8 191 aaKnown RBP18.12■□□□□ 0.49
SDC1-201ENST00000254351 DIP2BQ9P265 1576 aa18.12■□□□□ 0.49
SDC1-201ENST00000254351 TNPO1Q92973 898 aaKnown RBP18.12■□□□□ 0.49
SDC1-201ENST00000254351 ITPRIPQ8IWB1 547 aa18.12■□□□□ 0.49
SDC1-201ENST00000254351 TCP11L2Q8N4U5 519 aa18.12■□□□□ 0.49
SDC1-201ENST00000254351 KDM5DQ9BY66 1539 aa18.11■□□□□ 0.49
SDC1-201ENST00000254351 MAST1Q9Y2H9 1570 aa18.11■□□□□ 0.49
SDC1-201ENST00000254351 MAP3K4Q9Y6R4 1608 aa18.11■□□□□ 0.49
SDC1-201ENST00000254351 CFAP74Q9C0B2 1584 aa18.11■□□□□ 0.49
SDC1-201ENST00000254351 FAM13BQ9NYF5 915 aa18.11■□□□□ 0.49
SDC1-201ENST00000254351 ADGRL1O94910 1474 aa18.1■□□□□ 0.49
SDC1-201ENST00000254351 TRAPPC8Q9Y2L5 1435 aa18.09■□□□□ 0.49
SDC1-201ENST00000254351 LNPKQ9C0E8 428 aa18.09■□□□□ 0.49
SDC1-201ENST00000254351 CARD14Q9BXL6 1004 aa18.09■□□□□ 0.49
SDC1-201ENST00000254351 RBM42Q9BTD8 480 aaKnown RBP18.08■□□□□ 0.49
SDC1-201ENST00000254351 DDX11L8A8MPP1 907 aa18.07■□□□□ 0.48
SDC1-201ENST00000254351 FAM69CQ0P6D2 419 aa18.07■□□□□ 0.48
SDC1-201ENST00000254351 FAM135AQ9P2D6 1515 aa18.07■□□□□ 0.48
SDC1-201ENST00000254351 SCAPERQ9BY12 1400 aa18.07■□□□□ 0.48
SDC1-201ENST00000254351 PLA2R1Q13018 1463 aa18.06■□□□□ 0.48
SDC1-201ENST00000254351 NEO1Q92859 1461 aa18.06■□□□□ 0.48
SDC1-201ENST00000254351 TRPM1Q7Z4N2 1603 aa18.05■□□□□ 0.48
SDC1-201ENST00000254351 MORC1Q86VD1 984 aa18.05■□□□□ 0.48
SDC1-201ENST00000254351 CD2BP2O95400 341 aaKnown RBP18.05■□□□□ 0.48
SDC1-201ENST00000254351 SMC4Q9NTJ3 1288 aa18.05■□□□□ 0.48
SDC1-201ENST00000254351 PLXNC1O60486 1568 aa18.04■□□□□ 0.48
SDC1-201ENST00000254351 R3HCC1Q9Y3T6 440 aaKnown RBP18.04■□□□□ 0.48
SDC1-201ENST00000254351 GPRASP1Q5JY77 1395 aa18.03■□□□□ 0.48
SDC1-201ENST00000254351 CDCA8Q53HL2 280 aa18.03■□□□□ 0.48
SDC1-201ENST00000254351 CFAP70Q5T0N1 1121 aa18.03■□□□□ 0.48
SDC1-201ENST00000254351 AFAP1Q8N556 730 aa18.03■□□□□ 0.48
SDC1-201ENST00000254351 DNAJC5Q9H3Z4 198 aa18.03■□□□□ 0.48
SDC1-201ENST00000254351 RTEL1-TNFRSF6BF6WH68 1400 aa18.02■□□□□ 0.48
SDC1-201ENST00000254351 U2AF1L5P0DN76 240 aaPredicted RBP18.02■□□□□ 0.48
SDC1-201ENST00000254351 SSFA2P28290 1259 aa18.02■□□□□ 0.48
SDC1-201ENST00000254351 NASPP49321 788 aaPredicted RBP18.02■□□□□ 0.48
SDC1-201ENST00000254351 U2AF1Q01081 240 aaKnown RBP eCLIP18.02■□□□□ 0.48
SDC1-201ENST00000254351 MVPQ14764 893 aaKnown RBP18.02■□□□□ 0.48
SDC1-201ENST00000254351 DZIP1LQ8IYY4 767 aaKnown RBP18.02■□□□□ 0.48
SDC1-201ENST00000254351 INSRP06213 1382 aa18.02■□□□□ 0.47
SDC1-201ENST00000254351 MSNP26038 577 aaKnown RBP18.01■□□□□ 0.47
SDC1-201ENST00000254351 TPRNQ4KMQ1 711 aa18.01■□□□□ 0.47
SDC1-201ENST00000254351 DDX49Q9Y6V7 483 aaKnown RBP18.01■□□□□ 0.47
SDC1-201ENST00000254351 SPAG9O60271 1321 aaKnown RBP18.01■□□□□ 0.47
SDC1-201ENST00000254351 MPNDQ8N594 471 aa18.01■□□□□ 0.47
SDC1-201ENST00000254351 ZNF518AQ6AHZ1 1483 aa18■□□□□ 0.47
SDC1-201ENST00000254351 ZFYVE16Q7Z3T8 1539 aa18■□□□□ 0.47
SDC1-201ENST00000254351 FOXD4L5Q5VV16 416 aaPredicted RBP18■□□□□ 0.47
SDC1-201ENST00000254351 FOXD4L4Q8WXT5 416 aaPredicted RBP18■□□□□ 0.47
SDC1-201ENST00000254351 ANP32BQ92688 251 aaKnown RBP18■□□□□ 0.47
SDC1-201ENST00000254351 ZNF692Q9BU19 519 aaPredicted RBP18■□□□□ 0.47
SDC1-201ENST00000254351 C1orf115Q9H7X2 142 aa18■□□□□ 0.47
SDC1-201ENST00000254351 CHGAP10645 457 aaKnown RBP18■□□□□ 0.47
SDC1-201ENST00000254351 ZKSCAN2Q63HK3 967 aa18■□□□□ 0.47
SDC1-201ENST00000254351 GBP4Q96PP9 640 aa18■□□□□ 0.47
SDC1-201ENST00000254351 XPCQ01831 940 aaPredicted RBP17.99■□□□□ 0.47
SDC1-201ENST00000254351 SLC12A5Q9H2X9 1139 aa17.99■□□□□ 0.47
SDC1-201ENST00000254351 POGZQ7Z3K3 1410 aa17.99■□□□□ 0.47
SDC1-201ENST00000254351 U2SURPO15042 1029 aaKnown RBP17.99■□□□□ 0.47
SDC1-201ENST00000254351 MTHFSP49914 203 aa17.99■□□□□ 0.47
SDC1-201ENST00000254351 CHAMP1Q96JM3 812 aa17.99■□□□□ 0.47
SDC1-201ENST00000254351 PRDM10Q9NQV6 1147 aa17.98■□□□□ 0.47
SDC1-201ENST00000254351 INO80Q9ULG1 1556 aaPredicted RBP17.98■□□□□ 0.47
SDC1-201ENST00000254351 KIF13AQ9H1H9 1805 aa17.98■□□□□ 0.47
SDC1-201ENST00000254351 EXOSC9Q06265 439 aaKnown RBP17.98■□□□□ 0.47
SDC1-201ENST00000254351 A0A0U1RQG5 324 aaPredicted RBP17.98■□□□□ 0.47
SDC1-201ENST00000254351 RUNDC1Q96C34 613 aa17.98■□□□□ 0.47
SDC1-201ENST00000254351 ATP7AQ04656 1500 aa17.97■□□□□ 0.47
SDC1-201ENST00000254351 ASXL1Q8IXJ9 1541 aa17.97■□□□□ 0.47
SDC1-201ENST00000254351 TRIM27P14373 513 aa17.97■□□□□ 0.47
SDC1-201ENST00000254351 PRDM15P57071 1507 aaPredicted RBP17.97■□□□□ 0.47
SDC1-201ENST00000254351 DUOX2Q9NRD8 1548 aa17.97■□□□□ 0.47
SDC1-201ENST00000254351 PPRC1Q5VV67 1664 aaKnown RBP17.97■□□□□ 0.47
SDC1-201ENST00000254351 MCTP1Q6DN14 999 aa17.96■□□□□ 0.47
SDC1-201ENST00000254351 CAVIN1Q6NZI2 390 aaKnown RBP17.96■□□□□ 0.47
SDC1-201ENST00000254351 NOB1Q9ULX3 412 aaKnown RBP17.96■□□□□ 0.47
SDC1-201ENST00000254351 ANKRD45Q5TZF3 282 aa17.95■□□□□ 0.46
SDC1-201ENST00000254351 PDCL3Q9H2J4 239 aa17.95■□□□□ 0.46
SDC1-201ENST00000254351 TRAK1Q9UPV9 953 aa17.95■□□□□ 0.46
SDC1-201ENST00000254351 TMEM57Q8N5G2 664 aa17.94■□□□□ 0.46
SDC1-201ENST00000254351 PIK3C2GO75747 1445 aa17.94■□□□□ 0.46
SDC1-201ENST00000254351 SAFB2Q14151 953 aaKnown RBP eCLIP17.94■□□□□ 0.46
SDC1-201ENST00000254351 SSH1Q8WYL5 1049 aa17.94■□□□□ 0.46
SDC1-201ENST00000254351 PLEKHG5O94827 1062 aa17.94■□□□□ 0.46
SDC1-201ENST00000254351 GAS2L2Q8NHY3 880 aa17.94■□□□□ 0.46
SDC1-201ENST00000254351 TSPOAP1O95153 1857 aa17.93■□□□□ 0.46
SDC1-201ENST00000254351 TPM2P07951 284 aa17.93■□□□□ 0.46
SDC1-201ENST00000254351 MLH3Q9UHC1 1453 aa17.92■□□□□ 0.46
SDC1-201ENST00000254351 ELL2O00472 640 aaPredicted RBP17.92■□□□□ 0.46
SDC1-201ENST00000254351 RIPK4P57078 832 aa17.92■□□□□ 0.46
SDC1-201ENST00000254351 ZSCAN30Q86W11 494 aa17.92■□□□□ 0.46
SDC1-201ENST00000254351 KIDINS220Q9ULH0 1771 aa17.91■□□□□ 0.46
SDC1-201ENST00000254351 RBM27Q9P2N5 1060 aaKnown RBP17.91■□□□□ 0.46
SDC1-201ENST00000254351 PKP1Q13835 747 aa17.91■□□□□ 0.46
SDC1-201ENST00000254351 RAB3GAP1Q15042 981 aa17.91■□□□□ 0.46
SDC1-201ENST00000254351 FOXD4L6Q3SYB3 417 aaPredicted RBP17.91■□□□□ 0.46
SDC1-201ENST00000254351 NUTM2DQ5VT03 806 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 143.3 ms