RNA–Protein interactions for RNA: ENST00000223641.4

SEC61B-201, Transcript of Sec61 translocon beta subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC61B, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61B-201ENST00000223641 TMF1P82094 1093 aa19.64■□□□□ 0.73
SEC61B-201ENST00000223641 ZNF335Q9H4Z2 1342 aaPredicted RBP19.64■□□□□ 0.73
SEC61B-201ENST00000223641 DISP3Q9P2K9 1392 aa19.64■□□□□ 0.73
SEC61B-201ENST00000223641 NCOA3Q9Y6Q9 1424 aa19.64■□□□□ 0.73
SEC61B-201ENST00000223641 TULP4Q9NRJ4 1543 aa19.64■□□□□ 0.73
SEC61B-201ENST00000223641 SAFB2Q14151 953 aaKnown RBP eCLIP19.63■□□□□ 0.73
SEC61B-201ENST00000223641 WASHC2AQ641Q2 1341 aa19.62■□□□□ 0.73
SEC61B-201ENST00000223641 PUS7Q96PZ0 661 aaKnown RBP19.62■□□□□ 0.73
SEC61B-201ENST00000223641 NALCNQ8IZF0 1738 aa19.62■□□□□ 0.73
SEC61B-201ENST00000223641 MINK1Q8N4C8 1332 aaPredicted RBP19.61■□□□□ 0.73
SEC61B-201ENST00000223641 XIRP1Q702N8 1843 aaKnown RBP19.61■□□□□ 0.73
SEC61B-201ENST00000223641 CCDC7Q96M83 1385 aa19.6■□□□□ 0.73
SEC61B-201ENST00000223641 KIF7Q2M1P5 1343 aa19.6■□□□□ 0.73
SEC61B-201ENST00000223641 EVC2Q86UK5 1308 aa19.6■□□□□ 0.73
SEC61B-201ENST00000223641 PROSER2Q86WR7 435 aaPredicted RBP19.6■□□□□ 0.73
SEC61B-201ENST00000223641 LRRC7Q96NW7 1537 aa19.6■□□□□ 0.73
SEC61B-201ENST00000223641 ADGRL3Q9HAR2 1447 aa19.59■□□□□ 0.73
SEC61B-201ENST00000223641 LTBP4Q8N2S1 1624 aa19.59■□□□□ 0.73
SEC61B-201ENST00000223641 WASLO00401 505 aaPredicted RBP19.58■□□□□ 0.72
SEC61B-201ENST00000223641 CDCA8Q53HL2 280 aa19.58■□□□□ 0.72
SEC61B-201ENST00000223641 CDC42BPGQ6DT37 1551 aa19.57■□□□□ 0.72
SEC61B-201ENST00000223641 TMEM94Q12767 1356 aa19.57■□□□□ 0.72
SEC61B-201ENST00000223641 CDK19Q9BWU1 502 aa19.56■□□□□ 0.72
SEC61B-201ENST00000223641 RBM33Q96EV2 1170 aaKnown RBP19.55■□□□□ 0.72
SEC61B-201ENST00000223641 FMN2Q9NZ56 1722 aa19.54■□□□□ 0.72
SEC61B-201ENST00000223641 C19orf44Q9H6X5 657 aa19.53■□□□□ 0.72
SEC61B-201ENST00000223641 MYOM1P52179 1685 aa19.52■□□□□ 0.72
SEC61B-201ENST00000223641 DCCP43146 1447 aa19.52■□□□□ 0.72
SEC61B-201ENST00000223641 CABP2Q9NPB3 220 aa19.52■□□□□ 0.72
SEC61B-201ENST00000223641 USP32Q8NFA0 1604 aa19.51■□□□□ 0.71
SEC61B-201ENST00000223641 ATAD2Q6PL18 1390 aa19.51■□□□□ 0.71
SEC61B-201ENST00000223641 ATP7BP35670 1465 aa19.51■□□□□ 0.71
SEC61B-201ENST00000223641 SRPK2P78362 688 aaKnown RBP19.5■□□□□ 0.71
SEC61B-201ENST00000223641 ANKARQ7Z5J8 1434 aa19.49■□□□□ 0.71
SEC61B-201ENST00000223641 TOPAZ1Q8N9V7 1692 aa19.49■□□□□ 0.71
SEC61B-201ENST00000223641 PRR36Q9H6K5 1346 aa19.49■□□□□ 0.71
SEC61B-201ENST00000223641 RGPD8O14715 1765 aaPredicted RBP19.47■□□□□ 0.71
SEC61B-201ENST00000223641 NINLQ9Y2I6 1382 aa19.47■□□□□ 0.71
SEC61B-201ENST00000223641 NUDT16Q96DE0 195 aaKnown RBP19.47■□□□□ 0.71
SEC61B-201ENST00000223641 MSH6P52701 1360 aa19.46■□□□□ 0.71
SEC61B-201ENST00000223641 ITSN1Q15811 1721 aa19.46■□□□□ 0.71
SEC61B-201ENST00000223641 C14orf37Q86TY3 774 aa19.46■□□□□ 0.71
SEC61B-201ENST00000223641 CCDC61Q9Y6R9 512 aa19.46■□□□□ 0.71
SEC61B-201ENST00000223641 DDX10Q13206 875 aaKnown RBP19.44■□□□□ 0.7
SEC61B-201ENST00000223641 POLR3GLQ9BT43 218 aa19.44■□□□□ 0.7
SEC61B-201ENST00000223641 CADPS2Q86UW7 1296 aa19.43■□□□□ 0.7
SEC61B-201ENST00000223641 SLC12A5Q9H2X9 1139 aa19.43■□□□□ 0.7
SEC61B-201ENST00000223641 MST1RQ04912 1400 aa19.42■□□□□ 0.7
SEC61B-201ENST00000223641 CD163L1Q9NR16 1453 aa19.42■□□□□ 0.7
SEC61B-201ENST00000223641 PLEKHG3A1L390 1219 aa19.42■□□□□ 0.7
SEC61B-201ENST00000223641 PPIP5K1Q6PFW1 1433 aa19.42■□□□□ 0.7
SEC61B-201ENST00000223641 ATF3P18847 181 aa19.41■□□□□ 0.7
SEC61B-201ENST00000223641 CABP1Q9NZU7 370 aa19.41■□□□□ 0.7
SEC61B-201ENST00000223641 C1orf167Q5SNV9 1468 aa19.41■□□□□ 0.7
SEC61B-201ENST00000223641 CPSF1Q10570 1443 aaKnown RBP19.4■□□□□ 0.7
SEC61B-201ENST00000223641 IQSEC2Q5JU85 1478 aa19.4■□□□□ 0.7
SEC61B-201ENST00000223641 NUTM2FA1L443 756 aa19.39■□□□□ 0.69
SEC61B-201ENST00000223641 PER1O15534 1290 aaPredicted RBP19.39■□□□□ 0.69
SEC61B-201ENST00000223641 TMC1Q8TDI8 760 aa19.39■□□□□ 0.69
SEC61B-201ENST00000223641 ANKRD36BQ8N2N9 1353 aa19.39■□□□□ 0.69
SEC61B-201ENST00000223641 AKAP12Q02952 1782 aa19.39■□□□□ 0.69
SEC61B-201ENST00000223641 PANK3Q9H999 370 aa19.38■□□□□ 0.69
SEC61B-201ENST00000223641 POLR3AO14802 1390 aaPredicted RBP19.37■□□□□ 0.69
SEC61B-201ENST00000223641 A0A1W2PP64 1363 aa19.35■□□□□ 0.69
SEC61B-201ENST00000223641 MON2Q7Z3U7 1717 aa19.35■□□□□ 0.69
SEC61B-201ENST00000223641 CARD14Q9BXL6 1004 aa19.35■□□□□ 0.69
SEC61B-201ENST00000223641 TERF2IPQ9NYB0 399 aa19.35■□□□□ 0.69
SEC61B-201ENST00000223641 KIF1AQ12756 1690 aa19.35■□□□□ 0.69
SEC61B-201ENST00000223641 ACEP12821 1306 aa19.33■□□□□ 0.69
SEC61B-201ENST00000223641 ORAI2Q96SN7 254 aa19.33■□□□□ 0.68
SEC61B-201ENST00000223641 ZNF692Q9BU19 519 aaPredicted RBP19.33■□□□□ 0.68
SEC61B-201ENST00000223641 SLAIN2Q9P270 581 aa19.33■□□□□ 0.68
SEC61B-201ENST00000223641 PHF8Q9UPP1 1060 aa19.33■□□□□ 0.68
SEC61B-201ENST00000223641 ESCO1Q5FWF5 840 aa19.32■□□□□ 0.68
SEC61B-201ENST00000223641 HDGFL2Q7Z4V5 671 aaPredicted RBP19.32■□□□□ 0.68
SEC61B-201ENST00000223641 PMFBP1Q8TBY8 1022 aa19.31■□□□□ 0.68
SEC61B-201ENST00000223641 SSH2Q76I76 1423 aa19.31■□□□□ 0.68
SEC61B-201ENST00000223641 NRKQ7Z2Y5 1582 aa19.31■□□□□ 0.68
SEC61B-201ENST00000223641 DIEXFQ68CQ4 756 aaKnown RBP19.3■□□□□ 0.68
SEC61B-201ENST00000223641 CERKQ8TCT0 537 aa19.3■□□□□ 0.68
SEC61B-201ENST00000223641 USP6P35125 1406 aa19.29■□□□□ 0.68
SEC61B-201ENST00000223641 NSD3Q9BZ95 1437 aa19.29■□□□□ 0.68
SEC61B-201ENST00000223641 KTN1Q86UP2 1357 aaKnown RBP19.29■□□□□ 0.68
SEC61B-201ENST00000223641 EDC4Q6P2E9 1401 aaKnown RBP19.28■□□□□ 0.68
SEC61B-201ENST00000223641 BRINP3Q76B58 766 aa19.28■□□□□ 0.68
SEC61B-201ENST00000223641 NGDNQ8NEJ9 315 aaKnown RBP19.28■□□□□ 0.68
SEC61B-201ENST00000223641 BRD4O60885 1362 aaPredicted RBP19.28■□□□□ 0.68
SEC61B-201ENST00000223641 NPC1L1Q9UHC9 1359 aa19.28■□□□□ 0.68
SEC61B-201ENST00000223641 AMER1Q5JTC6 1135 aaPredicted RBP19.27■□□□□ 0.68
SEC61B-201ENST00000223641 KNSTRNQ9Y448 316 aa19.27■□□□□ 0.68
SEC61B-201ENST00000223641 FOXO3O43524 673 aa19.24■□□□□ 0.67
SEC61B-201ENST00000223641 TOM1O60784 492 aa19.24■□□□□ 0.67
SEC61B-201ENST00000223641 TRPM3Q9HCF6 1732 aaPredicted RBP19.24■□□□□ 0.67
SEC61B-201ENST00000223641 NHSL1Q5SYE7 1610 aa19.24■□□□□ 0.67
SEC61B-201ENST00000223641 ROBO1Q9Y6N7 1651 aa19.24■□□□□ 0.67
SEC61B-201ENST00000223641 KIF20BQ96Q89 1820 aa19.23■□□□□ 0.67
SEC61B-201ENST00000223641 CGNL1Q0VF96 1302 aa19.23■□□□□ 0.67
SEC61B-201ENST00000223641 TTC21BQ7Z4L5 1316 aa19.23■□□□□ 0.67
SEC61B-201ENST00000223641 NPHP3Q7Z494 1330 aa19.22■□□□□ 0.67
SEC61B-201ENST00000223641 TTC21AQ8NDW8 1320 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms