RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 USP8P40818 1118 aa12.58□□□□□ -0.4
VCL-201ENST00000211998 AKNAQ7Z591 1439 aa12.58□□□□□ -0.4
VCL-201ENST00000211998 TRERF1Q96PN7 1200 aa12.58□□□□□ -0.4
VCL-201ENST00000211998 ANO2Q9NQ90 1003 aa12.58□□□□□ -0.4
VCL-201ENST00000211998 CALCOCO1Q9P1Z2 691 aa12.58□□□□□ -0.4
VCL-201ENST00000211998 DCTN1Q14203 1278 aa12.57□□□□□ -0.4
VCL-201ENST00000211998 PANK1Q8TE04 598 aa12.57□□□□□ -0.4
VCL-201ENST00000211998 AXDND1Q5T1B0 1012 aaPredicted RBP12.57□□□□□ -0.4
VCL-201ENST00000211998 CCDC73Q6ZRK6 1079 aa12.56□□□□□ -0.4
VCL-201ENST00000211998 STAC3Q96MF2 364 aa12.56□□□□□ -0.4
VCL-201ENST00000211998 LRRFIP1Q32MZ4 808 aaKnown RBP12.56□□□□□ -0.4
VCL-201ENST00000211998 XPCQ01831 940 aaPredicted RBP12.56□□□□□ -0.4
VCL-201ENST00000211998 USP47Q96K76 1375 aa12.56□□□□□ -0.4
VCL-201ENST00000211998 ELL2O00472 640 aaPredicted RBP12.55□□□□□ -0.4
VCL-201ENST00000211998 KIAA0754O94854 1291 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 PCMTD1Q96MG8 357 aaPredicted RBP12.55□□□□□ -0.4
VCL-201ENST00000211998 NAT10Q9H0A0 1025 aaKnown RBP12.55□□□□□ -0.4
VCL-201ENST00000211998 MYOM3Q5VTT5 1437 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 PDILTQ8N807 584 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 TOMM22Q9NS69 142 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 ZKSCAN1P17029 563 aaPredicted RBP12.55□□□□□ -0.4
VCL-201ENST00000211998 TEFQ10587 303 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 GPATCH11Q8N954 259 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 NUTM2FA1L443 756 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 CDC45O75419 566 aa12.55□□□□□ -0.4
VCL-201ENST00000211998 CCP110O43303 1012 aa12.54□□□□□ -0.4
VCL-201ENST00000211998 ANKRD20A12PQ8NF67 263 aa12.54□□□□□ -0.4
VCL-201ENST00000211998 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.54□□□□□ -0.4
VCL-201ENST00000211998 CNTLNQ9NXG0 1405 aa12.54□□□□□ -0.4
VCL-201ENST00000211998 NEXNQ0ZGT2 675 aa12.54□□□□□ -0.4
VCL-201ENST00000211998 AAMPQ13685 434 aa12.54□□□□□ -0.4
VCL-201ENST00000211998 PPP4R3BQ5MIZ7 849 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 GIMAP7Q8NHV1 300 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 CUX1P39880 1505 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 CCDC27Q2M243 656 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 PDZRN3Q9UPQ7 1066 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 TTC5Q8N0Z6 440 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 CAGE1Q8TC20 777 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 CDCA7LQ96GN5 454 aa12.53□□□□□ -0.4
VCL-201ENST00000211998 SMC2O95347 1197 aa12.52□□□□□ -0.4
VCL-201ENST00000211998 ROCK1Q13464 1354 aa12.52□□□□□ -0.41
VCL-201ENST00000211998 CCDC7Q96M83 1385 aa12.52□□□□□ -0.41
VCL-201ENST00000211998 TTLL5Q6EMB2 1281 aa12.52□□□□□ -0.41
VCL-201ENST00000211998 RUFY2Q8WXA3 655 aa12.52□□□□□ -0.41
VCL-201ENST00000211998 CT47B1P0C2W7 299 aaPredicted RBP12.51□□□□□ -0.41
VCL-201ENST00000211998 EVA1CP58658 441 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 CLCN1P35523 988 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 HOOK1Q9UJC3 728 aaKnown RBP12.51□□□□□ -0.41
VCL-201ENST00000211998 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 MARCH6O60337 910 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 SPDYE4A6NLX3 237 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 EIF3JO75822 258 aaKnown RBP12.51□□□□□ -0.41
VCL-201ENST00000211998 OSCARQ8IYS5 282 aa12.51□□□□□ -0.41
VCL-201ENST00000211998 DIAPH1O60610 1272 aaKnown RBP12.51□□□□□ -0.41
VCL-201ENST00000211998 MINK1Q8N4C8 1332 aaPredicted RBP12.5□□□□□ -0.41
VCL-201ENST00000211998 DYNC1I1O14576 645 aa12.5□□□□□ -0.41
VCL-201ENST00000211998 RABEP1Q15276 862 aa12.5□□□□□ -0.41
VCL-201ENST00000211998 API5Q9BZZ5 524 aaKnown RBP12.5□□□□□ -0.41
VCL-201ENST00000211998 SDF4Q9BRK5 362 aa12.5□□□□□ -0.41
VCL-201ENST00000211998 K7ELQ4 463 aaPredicted RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 CCDC192P0DO97 292 aa12.49□□□□□ -0.41
VCL-201ENST00000211998 CIZ1Q9ULV3 898 aaPredicted RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 FIBPO43427 364 aa12.49□□□□□ -0.41
VCL-201ENST00000211998 AKAP17AQ02040 695 aaKnown RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 KIF7Q2M1P5 1343 aa12.49□□□□□ -0.41
VCL-201ENST00000211998 NAP1L1P55209 391 aaKnown RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 CWC22Q9HCG8 908 aaKnown RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 FOSBP53539 338 aa12.49□□□□□ -0.41
VCL-201ENST00000211998 SYNE3Q6ZMZ3 975 aa12.49□□□□□ -0.41
VCL-201ENST00000211998 DHX37Q8IY37 1157 aaKnown RBP12.49□□□□□ -0.41
VCL-201ENST00000211998 ERLIN1O75477 346 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 IRX3P78415 501 aaPredicted RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 TIGD1Q96MW7 591 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 CPLX2Q6PUV4 134 aaKnown RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 AMOTL1Q8IY63 956 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 CENPHQ9H3R5 247 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 NEK4P51957 841 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 IPO4Q8TEX9 1081 aaKnown RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 C11orf95C9JLR9 678 aaPredicted RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 OLFM4Q6UX06 510 aa12.48□□□□□ -0.41
VCL-201ENST00000211998 NOL10Q9BSC4 688 aaKnown RBP12.48□□□□□ -0.41
VCL-201ENST00000211998 FGD5Q6ZNL6 1462 aa12.47□□□□□ -0.41
VCL-201ENST00000211998 RNF20Q5VTR2 975 aa12.47□□□□□ -0.41
VCL-201ENST00000211998 WASHC2AQ641Q2 1341 aa12.47□□□□□ -0.41
VCL-201ENST00000211998 TMCO3Q6UWJ1 677 aa12.47□□□□□ -0.41
VCL-201ENST00000211998 SMG6Q86US8 1419 aaKnown RBP12.47□□□□□ -0.41
VCL-201ENST00000211998 FMNL2Q96PY5 1086 aa12.47□□□□□ -0.41
VCL-201ENST00000211998 C9orf78Q9NZ63 289 aaPredicted RBP12.47□□□□□ -0.41
VCL-201ENST00000211998 GTF2F1P35269 517 aaKnown RBP eCLIP12.47□□□□□ -0.418e-7■■■■■ 61.7
VCL-201ENST00000211998 DNAJC2Q99543 621 aaKnown RBP12.47□□□□□ -0.41
VCL-201ENST00000211998 MIA2Q96PC5 1412 aa12.46□□□□□ -0.41
VCL-201ENST00000211998 SYCE3A1L190 88 aa12.46□□□□□ -0.41
VCL-201ENST00000211998 RBM25P49756 843 aaKnown RBP12.46□□□□□ -0.41
VCL-201ENST00000211998 TRIM29Q14134 588 aa12.46□□□□□ -0.41
VCL-201ENST00000211998 CCDC102AQ96A19 550 aa12.46□□□□□ -0.41
VCL-201ENST00000211998 VPS53Q5VIR6 699 aa12.46□□□□□ -0.42
VCL-201ENST00000211998 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.42
VCL-201ENST00000211998 UBXN4Q92575 508 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms