RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C PAU4P53427 120 aa-0.98□□□□□ -2.57
PCF11YDR228C YLR365WQ7LIF2 110 aa-0.98□□□□□ -2.57
PCF11YDR228C NKP2Q06162 153 aa-0.99□□□□□ -2.57
PCF11YDR228C RPB11P38902 120 aa-0.99□□□□□ -2.57
PCF11YDR228C EDC1P53080 175 aaPredicted RBP-0.99□□□□□ -2.57
PCF11YDR228C APS2Q00381 147 aa-0.99□□□□□ -2.57
PCF11YDR228C YBL071CP38185 102 aa-1□□□□□ -2.57
PCF11YDR228C SWC7Q06707 132 aa-1□□□□□ -2.57
PCF11YDR228C YLR042CQ07990 161 aa-1□□□□□ -2.57
PCF11YDR228C YBR201C-AQ2V2Q3 67 aa-1□□□□□ -2.57
PCF11YDR228C IRA2P19158 3079 aa-1□□□□□ -2.57
PCF11YDR228C YHR214C-DP0CX93 97 aa-1.01□□□□□ -2.57
PCF11YDR228C BUD23P25627 275 aaPredicted RBP-1.01□□□□□ -2.57
PCF11YDR228C DNF3Q12674 1656 aa-1.02□□□□□ -2.57
PCF11YDR228C MRP49P32388 137 aa-1.03□□□□□ -2.57
PCF11YDR228C TIM8P57744 87 aa-1.03□□□□□ -2.57
PCF11YDR228C YDR278CQ05612 105 aa-1.03□□□□□ -2.57
PCF11YDR228C RTR2Q12378 196 aa-1.03□□□□□ -2.57
PCF11YDR228C YDR182W-AQ3E796 67 aa-1.03□□□□□ -2.57
PCF11YDR228C MEC1P38111 2368 aa-1.03□□□□□ -2.57
PCF11YDR228C YAR029WP39549 74 aa-1.03□□□□□ -2.57
PCF11YDR228C TLG1Q03322 224 aa-1.03□□□□□ -2.57
PCF11YDR228C YOR008C-AQ3E7B9 74 aa-1.03□□□□□ -2.57
PCF11YDR228C ATP18P81450 59 aa-1.04□□□□□ -2.58
PCF11YDR228C SPC2Q04969 178 aa-1.04□□□□□ -2.58
PCF11YDR228C YKL018C-AQ3E7A7 99 aa-1.04□□□□□ -2.58
PCF11YDR228C YCR085WP25650 117 aa-1.05□□□□□ -2.58
PCF11YDR228C YBR032WP38223 100 aa-1.05□□□□□ -2.58
PCF11YDR228C TY1B-MR1Q04214 1755 aa-1.05□□□□□ -2.58
PCF11YDR228C PAU5P43575 122 aa-1.05□□□□□ -2.58
PCF11YDR228C YPR108W-AQ3E7B3 70 aa-1.05□□□□□ -2.58
PCF11YDR228C TY1B-NL1Q12112 1755 aa-1.06□□□□□ -2.58
PCF11YDR228C TY1B-GR3Q12316 1755 aa-1.06□□□□□ -2.58
PCF11YDR228C BPT1P14772 1559 aa-1.06□□□□□ -2.58
PCF11YDR228C STT4P37297 1900 aa-1.06□□□□□ -2.58
PCF11YDR228C IRA1P18963 3092 aa-1.07□□□□□ -2.58
PCF11YDR228C VMA7P39111 118 aa-1.07□□□□□ -2.58
PCF11YDR228C SPC1P46965 94 aa-1.07□□□□□ -2.58
PCF11YDR228C KRE5P22023 1365 aa-1.08□□□□□ -2.58
PCF11YDR228C TY1B-NL2Q99337 1749 aaKnown RBP-1.08□□□□□ -2.58
PCF11YDR228C YLR099W-AQ3E798 87 aa-1.08□□□□□ -2.58
PCF11YDR228C YMR122W-AQ3E842 84 aa-1.08□□□□□ -2.58
PCF11YDR228C SPO14P36126 1683 aa-1.09□□□□□ -2.58
PCF11YDR228C EMC5P40540 141 aa-1.09□□□□□ -2.58
PCF11YDR228C NHP10Q03435 203 aa-1.09□□□□□ -2.58
PCF11YDR228C YOR289WQ12012 251 aaPredicted RBP-1.09□□□□□ -2.58
PCF11YDR228C TY3B-IQ7LHG5 1498 aaKnown RBP-1.09□□□□□ -2.58
PCF11YDR228C TY2B-LR1P0C2J3 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-FP0CX63 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-GR2P0CX64 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-CP25384 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-DR2Q03494 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-DR3Q07791 1770 aaKnown RBP-1.09□□□□□ -2.58
PCF11YDR228C TY2B-OR1Q12113 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-DR1Q12472 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-BQ12491 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C TY2B-OR2Q12501 1770 aa-1.09□□□□□ -2.58
PCF11YDR228C YAL065CO13511 128 aa-1.09□□□□□ -2.58
PCF11YDR228C NHP2P32495 156 aaPredicted RBP-1.09□□□□□ -2.58
PCF11YDR228C YBR090CP38253 122 aa-1.09□□□□□ -2.58
PCF11YDR228C BSC4P53841 131 aa-1.09□□□□□ -2.58
PCF11YDR228C YOS1Q3E834 85 aa-1.09□□□□□ -2.58
PCF11YDR228C TY1B-ER2Q03619 1755 aa-1.1□□□□□ -2.59
PCF11YDR228C TY1B-LR1Q12088 1755 aaKnown RBP-1.1□□□□□ -2.59
PCF11YDR228C UBC5P15732 148 aa-1.1□□□□□ -2.59
PCF11YDR228C GNA1P43577 159 aaPredicted RBP-1.1□□□□□ -2.59
PCF11YDR228C SIP18P50263 79 aa-1.1□□□□□ -2.59
PCF11YDR228C DYN2Q02647 92 aa-1.1□□□□□ -2.59
PCF11YDR228C RPO21P04050 1733 aaKnown RBP-1.11□□□□□ -2.59
PCF11YDR228C YOL097W-AQ3E7Y9 61 aa-1.11□□□□□ -2.59
PCF11YDR228C VTH1P40438 1549 aa-1.11□□□□□ -2.59
PCF11YDR228C VTH2P40890 1549 aa-1.11□□□□□ -2.59
PCF11YDR228C SNU13P39990 126 aaKnown RBP-1.12□□□□□ -2.59
PCF11YDR228C YKL068W-AQ3E826 78 aa-1.12□□□□□ -2.59
PCF11YDR228C LYS2P07702 1392 aa-1.12□□□□□ -2.59
PCF11YDR228C FPR2P32472 135 aa-1.14□□□□□ -2.59
PCF11YDR228C YHL005CP38752 130 aa-1.14□□□□□ -2.59
PCF11YDR228C MOT1P32333 1867 aa-1.14□□□□□ -2.59
PCF11YDR228C TOS6P48560 102 aa-1.14□□□□□ -2.59
PCF11YDR228C LHP1P33399 275 aaKnown RBP-1.15□□□□□ -2.59
PCF11YDR228C RSM19P53733 91 aaPredicted RBP-1.15□□□□□ -2.59
PCF11YDR228C ECM29P38737 1868 aa-1.15□□□□□ -2.59
PCF11YDR228C YMR090WQ04304 227 aaKnown RBP-1.16□□□□□ -2.59
PCF11YDR228C QCR6P00127 147 aa-1.16□□□□□ -2.6
PCF11YDR228C OLI1P61829 76 aa-1.16□□□□□ -2.6
PCF11YDR228C UBC4P15731 148 aa-1.17□□□□□ -2.6
PCF11YDR228C FYV7Q12247 151 aa-1.17□□□□□ -2.6
PCF11YDR228C YDR029WQ12111 104 aa-1.18□□□□□ -2.6
PCF11YDR228C HMRA1P0CY11 126 aa-1.18□□□□□ -2.6
PCF11YDR228C MHF2Q3E829 80 aa-1.18□□□□□ -2.6
PCF11YDR228C PAU23Q07987 124 aa-1.19□□□□□ -2.6
PCF11YDR228C PAU17Q12370 124 aa-1.19□□□□□ -2.6
PCF11YDR228C COA2Q3E823 68 aa-1.19□□□□□ -2.6
PCF11YDR228C SPP41P38904 1435 aa-1.2□□□□□ -2.6
PCF11YDR228C LSM2P38203 95 aaKnown RBP-1.21□□□□□ -2.6
PCF11YDR228C YMR103CQ04436 120 aa-1.21□□□□□ -2.6
PCF11YDR228C SMC4Q12267 1418 aa-1.21□□□□□ -2.6
PCF11YDR228C XRN1P22147 1528 aaKnown RBP-1.23□□□□□ -2.61
PCF11YDR228C POC4Q12245 148 aaPredicted RBP-1.23□□□□□ -2.61
PCF11YDR228C WIP1Q2V2P8 89 aa-1.23□□□□□ -2.61
Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms