RNA–Protein interactions for RNA: YLR211C

ATG38, Transcript of Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I, yeast

Gene ATG38, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG38	YLR211C	RPL37A	P49166	88 aa	Known RBP	0.93	□□□□□ -2.26
ATG38	YLR211C	YDR210W	Q03482	75 aa		0.93	□□□□□ -2.26
ATG38	YLR211C	LCL2	Q08045	131 aa		0.93	□□□□□ -2.26
ATG38	YLR211C	YPK9	Q12697	1472 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	YRF1-3	P0CX14	1859 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	YRF1-7	P0CX15	1859 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	YRF1-6	P53819	1859 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	BNI1	P41832	1953 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	YLR255C	O13574	117 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	YHL005C	P38752	130 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	HHY1	P39982	102 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	PAU5	P43575	122 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	HUG1	Q6Q5K6	68 aa		0.92	□□□□□ -2.26
ATG38	YLR211C	PDR10	P51533	1564 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	SSN2	P38931	1420 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	HMRA1	P0CY11	126 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	ROX3	P25046	220 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	EMC5	P40540	141 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	LCL1	Q02786	101 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	YOL118C	Q08259	102 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	RSF2	P46974	1380 aa		0.91	□□□□□ -2.26
ATG38	YLR211C	MSL1	P40567	111 aa	Predicted RBP	0.9	□□□□□ -2.27
ATG38	YLR211C	MVB12	P42939	101 aa		0.9	□□□□□ -2.27
ATG38	YLR211C	YMR082C	Q04276	118 aa		0.9	□□□□□ -2.27
ATG38	YLR211C	YDR029W	Q12111	104 aa		0.9	□□□□□ -2.27
ATG38	YLR211C	SRB6	P32570	121 aa		0.89	□□□□□ -2.27
ATG38	YLR211C	YDR042C	Q03205	200 aa		0.89	□□□□□ -2.27
ATG38	YLR211C	YGL194C-A	Q2V2P6	80 aa		0.89	□□□□□ -2.27
ATG38	YLR211C	YCR095W-A	Q3E787	52 aa		0.89	□□□□□ -2.27
ATG38	YLR211C	YHR213W-B	Q8TGK1	99 aa		0.89	□□□□□ -2.27
ATG38	YLR211C	URA2	P07259	2214 aa	Known RBP	0.88	□□□□□ -2.27
ATG38	YLR211C	MRPL38	P35996	138 aa	Predicted RBP	0.88	□□□□□ -2.27
ATG38	YLR211C	IMP2	P46972	177 aa		0.88	□□□□□ -2.27
ATG38	YLR211C	SCP1	Q08873	200 aa		0.88	□□□□□ -2.27
ATG38	YLR211C	SEC16	P48415	2195 aa	Known RBP	0.88	□□□□□ -2.27
ATG38	YLR211C	LAA1	P39526	2014 aa		0.88	□□□□□ -2.27
ATG38	YLR211C	GCV3	P39726	170 aa	Predicted RBP	0.87	□□□□□ -2.27
ATG38	YLR211C	SNU13	P39990	126 aa	Known RBP	0.87	□□□□□ -2.27
ATG38	YLR211C	YMR141C	P40211	102 aa		0.87	□□□□□ -2.27
ATG38	YLR211C	YJR128W	P47162	119 aa		0.87	□□□□□ -2.27
ATG38	YLR211C	YSP2	Q06681	1438 aa		0.87	□□□□□ -2.27
ATG38	YLR211C	BRR2	P32639	2163 aa	Known RBP	0.87	□□□□□ -2.27
ATG38	YLR211C	RPA190	P10964	1664 aa	Known RBP	0.86	□□□□□ -2.27
ATG38	YLR211C	PAU6	P0CE90	120 aa		0.86	□□□□□ -2.27
ATG38	YLR211C	PAU18	P0CE91	120 aa		0.86	□□□□□ -2.27
ATG38	YLR211C	RSM18	P40033	138 aa		0.86	□□□□□ -2.27
ATG38	YLR211C	YPL038W-A	Q3E7B4	63 aa		0.86	□□□□□ -2.27
ATG38	YLR211C	LTE1	P07866	1435 aa		0.86	□□□□□ -2.27
ATG38	YLR211C	SEC7	P11075	2009 aa	Known RBP	0.86	□□□□□ -2.27
ATG38	YLR211C	YER188C-A	P0C0V2	99 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	SRB8	P25648	1427 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	YBL071C	P38185	102 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	NHP10	Q03435	203 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	ICY1	Q04329	127 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	YOR034C-A	Q3E735	80 aa		0.85	□□□□□ -2.27
ATG38	YLR211C	ECM12	O13529	151 aa		0.84	□□□□□ -2.27
ATG38	YLR211C	RPL37B	P51402	88 aa	Known RBP	0.84	□□□□□ -2.27
ATG38	YLR211C	SNA2	P56508	79 aa		0.84	□□□□□ -2.27
ATG38	YLR211C	COX12	Q01519	83 aa		0.84	□□□□□ -2.27
ATG38	YLR211C	YMR175W-A	Q3E766	64 aa		0.84	□□□□□ -2.27
ATG38	YLR211C	SUS1	Q6WNK7	96 aa		0.84	□□□□□ -2.27
ATG38	YLR211C	POL1	P13382	1468 aa		0.84	□□□□□ -2.28
ATG38	YLR211C	MRP17	P28778	131 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	YIL086C	P40503	102 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	SPC1	P46965	94 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	COX19	Q3E731	98 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	YNR034W-A	Q3E841	98 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	GDB1	Q06625	1536 aa		0.83	□□□□□ -2.28
ATG38	YLR211C	MYO1	P08964	1928 aa		0.82	□□□□□ -2.28
ATG38	YLR211C	RPS11A	P0CX47	156 aa	Known RBP	0.82	□□□□□ -2.28
ATG38	YLR211C	RPS11B	P0CX48	156 aa	Known RBP	0.82	□□□□□ -2.28
ATG38	YLR211C	SHU1	P38751	150 aa		0.82	□□□□□ -2.28
ATG38	YLR211C	MRX7	P53869	86 aa		0.82	□□□□□ -2.28
ATG38	YLR211C	POL2	P21951	2222 aa	Known RBP	0.82	□□□□□ -2.28
ATG38	YLR211C	URB1	P34241	1764 aa	Known RBP	0.82	□□□□□ -2.28
ATG38	YLR211C	AUA1	P32450	94 aa		0.81	□□□□□ -2.28
ATG38	YLR211C	MPC2	P38857	129 aa		0.81	□□□□□ -2.28
ATG38	YLR211C	ESC1	Q03661	1658 aa	Known RBP	0.81	□□□□□ -2.28
ATG38	YLR211C	SWR1	Q05471	1514 aa		0.8	□□□□□ -2.28
ATG38	YLR211C	NHP2	P32495	156 aa	Predicted RBP	0.8	□□□□□ -2.28
ATG38	YLR211C	AIM19	P40502	157 aa		0.8	□□□□□ -2.28
ATG38	YLR211C	NTE1	Q04958	1679 aa		0.8	□□□□□ -2.28
ATG38	YLR211C	RPL43A	P0CX25	92 aa	Known RBP	0.79	□□□□□ -2.28
ATG38	YLR211C	RPL43B	P0CX26	92 aa		0.79	□□□□□ -2.28
ATG38	YLR211C	PAU1	P0CE88	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU14	P0CE89	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU8	P0CE92	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU11	P0CE93	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	YLR157W-E	P0CF00	54 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	YBR292C	P38357	123 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU13	P38725	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU4	P53427	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU10	Q03050	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	PAU9	Q3E770	120 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	YLR307C-A	Q3E825	87 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	YKL068W-A	Q3E826	78 aa		0.78	□□□□□ -2.28
ATG38	YLR211C	CWP2	P43497	92 aa		0.77	□□□□□ -2.29
ATG38	YLR211C	PAU20	Q08322	120 aa		0.77	□□□□□ -2.29
ATG38	YLR211C	POC4	Q12245	148 aa	Predicted RBP	0.77	□□□□□ -2.29
ATG38	YLR211C	YRF1-1	P0CX20	1796 aa		0.76	□□□□□ -2.29

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