RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C YMR320WQ04897 101 aa-0.86□□□□□ -2.55
PCF11YDR228C ECM12O13529 151 aa-0.86□□□□□ -2.55
PCF11YDR228C TDA2P40045 126 aa-0.86□□□□□ -2.55
PCF11YDR228C CSN9Q03981 162 aa-0.86□□□□□ -2.55
PCF11YDR228C DAD1Q12248 94 aa-0.86□□□□□ -2.55
PCF11YDR228C YMR001C-AQ8TGS9 76 aa-0.86□□□□□ -2.55
PCF11YDR228C HKR1P41809 1802 aa-0.87□□□□□ -2.55
PCF11YDR228C YHR130CP38834 111 aa-0.87□□□□□ -2.55
PCF11YDR228C RGI1P40043 161 aaPredicted RBP-0.87□□□□□ -2.55
PCF11YDR228C YGL204CP53089 101 aa-0.87□□□□□ -2.55
PCF11YDR228C ICY1Q04329 127 aa-0.87□□□□□ -2.55
PCF11YDR228C YLR118CQ12354 227 aa-0.87□□□□□ -2.55
PCF11YDR228C MIC10Q96VH5 97 aa-0.87□□□□□ -2.55
PCF11YDR228C SSN2P38931 1420 aa-0.88□□□□□ -2.55
PCF11YDR228C BUD4P47136 1447 aa-0.88□□□□□ -2.55
PCF11YDR228C YHR138CP38841 114 aaPredicted RBP-0.88□□□□□ -2.55
PCF11YDR228C RSM18P40033 138 aa-0.88□□□□□ -2.55
PCF11YDR228C SPC24Q04477 213 aa-0.88□□□□□ -2.55
PCF11YDR228C PAU20Q08322 120 aa-0.88□□□□□ -2.55
PCF11YDR228C YIR021W-AQ3E739 70 aa-0.88□□□□□ -2.55
PCF11YDR228C Q0144Q9ZZW2 109 aa-0.88□□□□□ -2.55
PCF11YDR228C MRP17P28778 131 aa-0.88□□□□□ -2.55
PCF11YDR228C SRB6P32570 121 aa-0.88□□□□□ -2.55
PCF11YDR228C YOR1P53049 1477 aa-0.89□□□□□ -2.55
PCF11YDR228C NUM1Q00402 2748 aa-0.89□□□□□ -2.55
PCF11YDR228C SAE3P89114 91 aa-0.89□□□□□ -2.55
PCF11YDR228C MIX14Q04341 121 aa-0.89□□□□□ -2.55
PCF11YDR228C CSF1Q12150 2958 aa-0.89□□□□□ -2.55
PCF11YDR228C PAU19P0CE85 124 aa-0.9□□□□□ -2.55
PCF11YDR228C COX7P10174 60 aa-0.9□□□□□ -2.55
PCF11YDR228C PAU3P25610 124 aa-0.9□□□□□ -2.55
PCF11YDR228C PAU24P38155 120 aa-0.9□□□□□ -2.55
PCF11YDR228C GIM4P40005 111 aaKnown RBP-0.9□□□□□ -2.55
PCF11YDR228C YER187WP40102 141 aa-0.9□□□□□ -2.55
PCF11YDR228C GTT1P40582 234 aa-0.9□□□□□ -2.55
PCF11YDR228C YDR210WQ03482 75 aa-0.9□□□□□ -2.55
PCF11YDR228C YIR020CP40575 100 aa-0.9□□□□□ -2.55
PCF11YDR228C YNL277W-AQ3E7Z0 62 aa-0.9□□□□□ -2.55
PCF11YDR228C SRB8P25648 1427 aa-0.91□□□□□ -2.56
PCF11YDR228C SNA2P56508 79 aa-0.92□□□□□ -2.56
PCF11YDR228C YOR376W-AQ3E805 51 aa-0.92□□□□□ -2.56
PCF11YDR228C YRF1-1P0CX20 1796 aa-0.92□□□□□ -2.56
PCF11YDR228C YRF1-5P0CX21 1796 aa-0.92□□□□□ -2.56
PCF11YDR228C YRF1-8P0CX22 1796 aa-0.92□□□□□ -2.56
PCF11YDR228C PAU2P32612 120 aa-0.92□□□□□ -2.56
PCF11YDR228C PAU15P40585 124 aa-0.92□□□□□ -2.56
PCF11YDR228C HUR1P45820 110 aa-0.92□□□□□ -2.56
PCF11YDR228C YLR361C-AQ3E795 98 aa-0.93□□□□□ -2.56
PCF11YDR228C YCR099CP25657 155 aa-0.94□□□□□ -2.56
PCF11YDR228C NTE1Q04958 1679 aa-0.94□□□□□ -2.56
PCF11YDR228C PAU1P0CE88 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU14P0CE89 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU6P0CE90 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU18P0CE91 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU8P0CE92 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU11P0CE93 120 aa-0.95□□□□□ -2.56
PCF11YDR228C ROX3P25046 220 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU13P38725 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU10Q03050 120 aa-0.95□□□□□ -2.56
PCF11YDR228C PAU9Q3E770 120 aa-0.95□□□□□ -2.56
PCF11YDR228C Q0032Q9ZZX7 96 aa-0.95□□□□□ -2.56
PCF11YDR228C YHR050W-AQ05451 56 aa-0.95□□□□□ -2.56
PCF11YDR228C SMD2Q06217 110 aaKnown RBP-0.95□□□□□ -2.56
PCF11YDR228C YCR095W-AQ3E787 52 aa-0.95□□□□□ -2.56
PCF11YDR228C MMS1Q06211 1407 aa-0.96□□□□□ -2.56
PCF11YDR228C PAU16P35994 123 aa-0.96□□□□□ -2.56
PCF11YDR228C AIM19P40502 157 aa-0.96□□□□□ -2.56
PCF11YDR228C VMA21P41806 77 aa-0.96□□□□□ -2.56
PCF11YDR228C SFT1P43682 97 aa-0.96□□□□□ -2.56
PCF11YDR228C YNR034W-AQ3E841 98 aa-0.96□□□□□ -2.56
PCF11YDR228C YLR419WQ06698 1435 aaKnown RBP-0.96□□□□□ -2.56
PCF11YDR228C MYO2P19524 1574 aaKnown RBP-0.96□□□□□ -2.56
PCF11YDR228C CHD1P32657 1468 aa-0.96□□□□□ -2.56
PCF11YDR228C BPH1P25356 2167 aa-0.96□□□□□ -2.56
PCF11YDR228C TOM6P33448 61 aa-0.97□□□□□ -2.56
PCF11YDR228C YBL044WP38194 122 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-DR5P0C2I2 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-DR6P0C2I3 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-LR2P0C2I5 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-PR1P0C2I9 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-PR2P0C2J0 1756 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-JR1P47098 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-JR2P47100 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-ML2Q03434 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-ER1Q03612 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-DR1Q03855 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-MR2Q04670 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-ML1Q04711 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-GR1Q12141 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-BRQ12193 1756 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-GR2Q12269 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-OLQ12273 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-PLQ12414 1755 aaKnown RBP-0.97□□□□□ -2.56
PCF11YDR228C TY1B-ORQ92393 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C TY1B-DR3Q99231 1755 aa-0.97□□□□□ -2.56
PCF11YDR228C CUP1-1P0CX80 61 aa-0.97□□□□□ -2.57
PCF11YDR228C CUP1-2P0CX81 61 aa-0.97□□□□□ -2.57
PCF11YDR228C SDH6Q3E785 79 aa-0.97□□□□□ -2.57
PCF11YDR228C YNL042W-BQ3E7Z2 85 aa-0.97□□□□□ -2.57
PCF11YDR228C RPS20P38701 121 aaKnown RBP-0.98□□□□□ -2.57
Retrieved 100 of 5,963 RNA–protein pairs in 84.2 ms