RNA–Protein interactions for RNA: YBL067C

UBP13, Transcript of Ubiquitin-specific protease that cleaves Ub-protein fusions, yeast

Gene UBP13, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP13	YBL067C	SSS1	P35179	80 aa		4.84	□□□□□ -1.63
UBP13	YBL067C	RPS19A	P07280	144 aa	Known RBP	4.84	□□□□□ -1.64
UBP13	YBL067C	RPS19B	P07281	144 aa	Predicted RBP	4.84	□□□□□ -1.64
UBP13	YBL067C	RPS22A	P0C0W1	130 aa	Known RBP	4.84	□□□□□ -1.64
UBP13	YBL067C	RPB7	P34087	171 aa		4.84	□□□□□ -1.64
UBP13	YBL067C	ROM2	P51862	1356 aa	Known RBP	4.84	□□□□□ -1.64
UBP13	YBL067C	CIS3	P47001	227 aa		4.83	□□□□□ -1.64
UBP13	YBL067C	POP3	P53833	195 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP13	YBL067C	YPR145C-A	Q2V2P0	78 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	YDR119W-A	Q2V2P9	66 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	UFD4	P33202	1483 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	SIN3	P22579	1536 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	GDB1	Q06625	1536 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	STF2	P16965	84 aa		4.82	□□□□□ -1.64
UBP13	YBL067C	ICS3	P47034	131 aa		4.81	□□□□□ -1.64
UBP13	YBL067C	CUE4	Q04201	117 aa	Predicted RBP	4.81	□□□□□ -1.64
UBP13	YBL067C	RPS25A	Q3E792	108 aa	Predicted RBP	4.81	□□□□□ -1.64
UBP13	YBL067C	YDL157C	Q12082	118 aa		4.81	□□□□□ -1.64
UBP13	YBL067C	MLP1	Q02455	1875 aa	Known RBP	4.8	□□□□□ -1.64
UBP13	YBL067C	LST8	P41318	303 aa		4.8	□□□□□ -1.64
UBP13	YBL067C	RSM18	P40033	138 aa		4.8	□□□□□ -1.64
UBP13	YBL067C	IMP2	P46972	177 aa		4.8	□□□□□ -1.64
UBP13	YBL067C	MMS1	Q06211	1407 aa		4.79	□□□□□ -1.64
UBP13	YBL067C	SOD1	P00445	154 aa	Known RBP	4.79	□□□□□ -1.64
UBP13	YBL067C	SRX1	P36077	127 aa		4.79	□□□□□ -1.64
UBP13	YBL067C	YEL014C	P39999	101 aa		4.79	□□□□□ -1.64
UBP13	YBL067C	YOL131W	Q08270	108 aa		4.79	□□□□□ -1.64
UBP13	YBL067C	RKR1	Q04781	1562 aa		4.79	□□□□□ -1.64
UBP13	YBL067C	MMS22	Q06164	1454 aa		4.78	□□□□□ -1.64
UBP13	YBL067C	QCR8	P08525	94 aa		4.78	□□□□□ -1.64
UBP13	YBL067C	RPS22B	Q3E7Y3	130 aa	Known RBP	4.78	□□□□□ -1.64
UBP13	YBL067C	DNF1	P32660	1571 aa		4.78	□□□□□ -1.64
UBP13	YBL067C	YJL197C-A	P0C5P0	93 aa		4.78	□□□□□ -1.64
UBP13	YBL067C	POL1	P13382	1468 aa		4.78	□□□□□ -1.65
UBP13	YBL067C	RPL26A	P05743	127 aa	Known RBP	4.77	□□□□□ -1.65
UBP13	YBL067C	YBR209W	P38311	105 aa		4.77	□□□□□ -1.65
UBP13	YBL067C	RPL26B	P53221	127 aa	Known RBP	4.77	□□□□□ -1.65
UBP13	YBL067C	HMRA2	P0CY13	119 aa		4.77	□□□□□ -1.65
UBP13	YBL067C	CYR1	P08678	2026 aa	Known RBP	4.77	□□□□□ -1.65
UBP13	YBL067C	ESP1	Q03018	1630 aa		4.76	□□□□□ -1.65
UBP13	YBL067C	IRC20	Q06554	1556 aa		4.76	□□□□□ -1.65
UBP13	YBL067C	ROX3	P25046	220 aa		4.75	□□□□□ -1.65
UBP13	YBL067C	NHP2	P32495	156 aa	Predicted RBP	4.74	□□□□□ -1.65
UBP13	YBL067C	TMC1	Q08422	150 aa	Predicted RBP	4.73	□□□□□ -1.65
UBP13	YBL067C	MET31	Q03081	177 aa		4.73	□□□□□ -1.65
UBP13	YBL067C	SRB8	P25648	1427 aa		4.73	□□□□□ -1.65
UBP13	YBL067C	DOP1	Q03921	1698 aa		4.72	□□□□□ -1.65
UBP13	YBL067C	YLR419W	Q06698	1435 aa	Known RBP	4.71	□□□□□ -1.66
UBP13	YBL067C	TOM6	P33448	61 aa		4.71	□□□□□ -1.66
UBP13	YBL067C	YMR030W-A	Q3E760	96 aa		4.71	□□□□□ -1.66
UBP13	YBL067C	YLR285C-A	Q3E771	56 aa		4.71	□□□□□ -1.66
UBP13	YBL067C	RPL36B	O14455	100 aa	Known RBP	4.7	□□□□□ -1.66
UBP13	YBL067C	RPL36A	P05745	100 aa	Predicted RBP	4.7	□□□□□ -1.66
UBP13	YBL067C	AIM4	P38305	123 aa	Predicted RBP	4.7	□□□□□ -1.66
UBP13	YBL067C	YHL005C	P38752	130 aa		4.7	□□□□□ -1.66
UBP13	YBL067C	YHR022C	P38763	256 aa		4.7	□□□□□ -1.66
UBP13	YBL067C	ECM29	P38737	1868 aa		4.7	□□□□□ -1.66
UBP13	YBL067C	YBR292C	P38357	123 aa		4.69	□□□□□ -1.66
UBP13	YBL067C	HPA2	Q06592	156 aa		4.69	□□□□□ -1.66
UBP13	YBL067C	YBR027C	P38220	110 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	ATX1	P38636	73 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	SPC1	P46965	94 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	RDS3	Q06835	107 aa	Predicted RBP	4.68	□□□□□ -1.66
UBP13	YBL067C	YIL134C-A	Q45U18	67 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	YJL144W	P47009	104 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	DNF2	Q12675	1612 aa		4.68	□□□□□ -1.66
UBP13	YBL067C	FLO9	P39712	1322 aa		4.67	□□□□□ -1.66
UBP13	YBL067C	ACC1	Q00955	2233 aa	Known RBP	4.67	□□□□□ -1.66
UBP13	YBL067C	AGA2	P32781	87 aa		4.66	□□□□□ -1.66
UBP13	YBL067C	YNL198C	P40166	100 aa		4.66	□□□□□ -1.66
UBP13	YBL067C	MIC27	P50945	234 aa		4.66	□□□□□ -1.66
UBP13	YBL067C	YDR381C-A	Q3E6R5	114 aa		4.66	□□□□□ -1.66
UBP13	YBL067C	IQG1	Q12280	1495 aa		4.66	□□□□□ -1.66
UBP13	YBL067C	RPL22A	P05749	121 aa	Known RBP	4.65	□□□□□ -1.66
UBP13	YBL067C	VPS15	P22219	1454 aa		4.65	□□□□□ -1.67
UBP13	YBL067C	MRPL38	P35996	138 aa	Predicted RBP	4.64	□□□□□ -1.67
UBP13	YBL067C	UBR2	Q07963	1872 aa		4.64	□□□□□ -1.67
UBP13	YBL067C	YGL260W	P53056	76 aa		4.64	□□□□□ -1.67
UBP13	YBL067C	YRF1-1	P0CX20	1796 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	YRF1-5	P0CX21	1796 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	YRF1-8	P0CX22	1796 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	YGL014C-A	P0C5N1	53 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	POR2	P40478	281 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	YOR093C	Q12275	1648 aa		4.63	□□□□□ -1.67
UBP13	YBL067C	MRP17	P28778	131 aa		4.62	□□□□□ -1.67
UBP13	YBL067C	CYT2	Q00873	224 aa		4.62	□□□□□ -1.67
UBP13	YBL067C	SWM2	P40342	146 aa		4.62	□□□□□ -1.67
UBP13	YBL067C	TIM12	P32830	109 aa		4.61	□□□□□ -1.67
UBP13	YBL067C	PDX3	P38075	228 aa	Known RBP	4.61	□□□□□ -1.67
UBP13	YBL067C	SMC4	Q12267	1418 aa		4.61	□□□□□ -1.67
UBP13	YBL067C	YCR095W-A	Q3E787	52 aa		4.61	□□□□□ -1.67
UBP13	YBL067C	YHR214C-D	P0CX93	97 aa		4.6	□□□□□ -1.67
UBP13	YBL067C	LSM6	Q06406	86 aa	Known RBP	4.6	□□□□□ -1.67
UBP13	YBL067C	RRP5	Q05022	1729 aa	Known RBP	4.59	□□□□□ -1.67
UBP13	YBL067C	TAR1	Q8TGM6	124 aa		4.59	□□□□□ -1.67
UBP13	YBL067C	PAU6	P0CE90	120 aa		4.58	□□□□□ -1.68
UBP13	YBL067C	PAU18	P0CE91	120 aa		4.58	□□□□□ -1.68
UBP13	YBL067C	YOL118C	Q08259	102 aa		4.58	□□□□□ -1.68
UBP13	YBL067C	NTE1	Q04958	1679 aa		4.58	□□□□□ -1.68
UBP13	YBL067C	YEL008W	P40001	126 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 88.2 ms