RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	VMA11	P32842	164 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	MCH1	Q07376	486 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU1	P0CE88	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU14	P0CE89	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU6	P0CE90	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU18	P0CE91	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU8	P0CE92	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU11	P0CE93	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	UTR5	P32630	166 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	UMP1	P38293	148 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU13	P38725	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU4	P53427	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU10	Q03050	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU20	Q08322	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	FYV12	Q08559	129 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	PAU9	Q3E770	120 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	YNL162W-A	Q3E7A8	72 aa		4.1	□□□□□ -1.75
NUP1	YOR098C	NOP1	P15646	327 aa	Known RBP	4.09	□□□□□ -1.76
NUP1	YOR098C	YBR292C	P38357	123 aa		4.09	□□□□□ -1.76
NUP1	YOR098C	YDR391C	Q04170	232 aa		4.09	□□□□□ -1.76
NUP1	YOR098C	YTH1	Q06102	208 aa	Predicted RBP	4.09	□□□□□ -1.76
NUP1	YOR098C	YGL010W	P25338	174 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	FMP46	P36141	133 aa	Known RBP	4.08	□□□□□ -1.76
NUP1	YOR098C	YDL157C	Q12082	118 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	MSW1	P04803	379 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	SHB17	P36136	271 aa	Known RBP	4.08	□□□□□ -1.76
NUP1	YOR098C	HSP10	P38910	106 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	THG1	P53215	237 aa	Known RBP	4.08	□□□□□ -1.76
NUP1	YOR098C	YER134C	P40081	178 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	PAU23	Q07987	124 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	PAU17	Q12370	124 aa		4.08	□□□□□ -1.76
NUP1	YOR098C	YAR023C	D6VPM8	179 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	YHR125W	P38831	101 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	KRE9	P39005	276 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	YGR017W	P53210	297 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	AIM11	P87275	137 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	YDR274C	P87283	123 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	SCS22	Q6Q595	175 aa		4.07	□□□□□ -1.76
NUP1	YOR098C	DAD3	P69850	94 aa		4.06	□□□□□ -1.76
NUP1	YOR098C	AHT1	P29589	182 aa		4.06	□□□□□ -1.76
NUP1	YOR098C	LSM2	P38203	95 aa	Known RBP	4.06	□□□□□ -1.76
NUP1	YOR098C	YMR090W	Q04304	227 aa	Known RBP	4.06	□□□□□ -1.76
NUP1	YOR098C	ATG10	Q07879	167 aa		4.06	□□□□□ -1.76
NUP1	YOR098C	PCL1	P24867	279 aa		4.06	□□□□□ -1.76
NUP1	YOR098C	RPL13B	P40212	199 aa	Known RBP	4.06	□□□□□ -1.76
NUP1	YOR098C	SMD3	P43321	101 aa	Known RBP	4.06	□□□□□ -1.76
NUP1	YOR098C	RPL13A	Q12690	199 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP1	YOR098C	YBR220C	P38318	560 aa		4.05	□□□□□ -1.76
NUP1	YOR098C	ARC15	P40518	154 aa	RIP-Chip data	4.05	□□□□□ -1.76	RIP-Chip
NUP1	YOR098C	FSF1	Q12029	327 aa	Known RBP	4.05	□□□□□ -1.76
NUP1	YOR098C	YER039C-A	P0CD97	72 aa		4.05	□□□□□ -1.76
NUP1	YOR098C	FCF1	Q05498	189 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP1	YOR098C	IRA2	P19158	3079 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	PAU16	P35994	123 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	PAM17	P36147	197 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	CTR2	P38865	189 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	HUT1	Q12520	339 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	YML122C	Q03207	126 aa		4.04	□□□□□ -1.76
NUP1	YOR098C	YDR524C-B	Q3E6R4	66 aa		4.03	□□□□□ -1.76
NUP1	YOR098C	SBH1	P52870	82 aa		4.03	□□□□□ -1.76
NUP1	YOR098C	YOR062C	P36025	268 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	DSK2	P48510	373 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	TOR2	P32600	2474 aa	Known RBP	4.02	□□□□□ -1.77
NUP1	YOR098C	RPB11	P38902	120 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	ECO1	P43605	281 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	ERG25	P53045	309 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	MDH2	P22133	377 aa		4.02	□□□□□ -1.77
NUP1	YOR098C	SEC11	P15367	167 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	HSP12	P22943	109 aa	Known RBP	4.01	□□□□□ -1.77
NUP1	YOR098C	SMD1	Q02260	146 aa	Predicted RBP	4.01	□□□□□ -1.77
NUP1	YOR098C	YHR032W-A	P0C5N6	59 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	YBR090C	P38253	122 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	YNL198C	P40166	100 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	YIL163C	P40448	117 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	CUP9	P41817	306 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	HUG1	Q6Q5K6	68 aa		4.01	□□□□□ -1.77
NUP1	YOR098C	YMR007W	Q03675	126 aa		4	□□□□□ -1.77
NUP1	YOR098C	YOR105W	Q08504	108 aa		4	□□□□□ -1.77
NUP1	YOR098C	ATP20	Q12233	115 aa		4	□□□□□ -1.77
NUP1	YOR098C	BEM2	P39960	2167 aa	Known RBP	4	□□□□□ -1.77
NUP1	YOR098C	GON7	P46984	123 aa		4	□□□□□ -1.77
NUP1	YOR098C	YGL230C	P53074	147 aa		4	□□□□□ -1.77
NUP1	YOR098C	PAI3	P01094	68 aa		4	□□□□□ -1.77
NUP1	YOR098C	YDR102C	Q03864	110 aa		4	□□□□□ -1.77
NUP1	YOR098C	CDC39	P25655	2108 aa	Known RBP	3.99	□□□□□ -1.77
NUP1	YOR098C	YGR269W	P40326	108 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	MSL1	P40567	111 aa	Predicted RBP	3.99	□□□□□ -1.77
NUP1	YOR098C	VPS68	Q12016	184 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	SOD1	P00445	154 aa	Known RBP	3.99	□□□□□ -1.77
NUP1	YOR098C	YHR180W	P38868	163 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	YLR042C	Q07990	161 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	YOR343C	Q12484	108 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	BLM10	P43583	2143 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	SEC16	P48415	2195 aa	Known RBP	3.99	□□□□□ -1.77
NUP1	YOR098C	ANB1	P19211	157 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	MPC3	P53311	146 aa		3.99	□□□□□ -1.77
NUP1	YOR098C	YPR174C	Q06616	221 aa	Predicted RBP	3.99	□□□□□ -1.77
NUP1	YOR098C	YOL118C	Q08259	102 aa		3.98	□□□□□ -1.77
NUP1	YOR098C	YOS1	Q3E834	85 aa		3.98	□□□□□ -1.77
NUP1	YOR098C	VAR1	P02381	398 aa		3.98	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 28.6 ms