RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	CUP2	P15315	225 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	SEC59	P20048	519 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	KTI12	P34253	313 aa	Known RBP	3.19	□□□□□ -1.9
RRP40	YOL142W	POG1	P40473	351 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	YFR035C	P43608	114 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	HAM1	P47119	197 aa	Known RBP	3.19	□□□□□ -1.9
RRP40	YOL142W	YPL162C	Q12042	273 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	YPR063C	Q12160	140 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	PCC1	Q3E833	88 aa		3.19	□□□□□ -1.9
RRP40	YOL142W	TIR1	P10863	254 aa		3.18	□□□□□ -1.9
RRP40	YOL142W	CNB1	P25296	175 aa		3.18	□□□□□ -1.9
RRP40	YOL142W	AME1	P38313	324 aa		3.18	□□□□□ -1.9
RRP40	YOL142W	YER135C	P40082	130 aa		3.18	□□□□□ -1.9
RRP40	YOL142W	YLR118C	Q12354	227 aa		3.18	□□□□□ -1.9
RRP40	YOL142W	VAR1	P02381	398 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	FZF1	P32805	299 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	NTF2	P33331	125 aa	Known RBP	3.17	□□□□□ -1.9
RRP40	YOL142W	NRG2	P38082	220 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	YGL185C	P53100	379 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	SDS23	P53172	527 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	TIM21	P53220	239 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	COX12	Q01519	83 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	YLR342W-A	Q3E810	57 aa		3.17	□□□□□ -1.9
RRP40	YOL142W	POF1	P25576	258 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
RRP40	YOL142W	PGD1	P40356	397 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	MOG1	P47123	218 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	DIA1	P54005	336 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	DAD4	P69851	72 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	NAT3	Q06504	195 aa		3.16	□□□□□ -1.9
RRP40	YOL142W	FMP49	A0A023PZB3	126 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	RPL2A	P0CX45	254 aa	Known RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	RPL2B	P0CX46	254 aa	Known RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	RPS11A	P0CX47	156 aa	Known RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	RPS11B	P0CX48	156 aa	Known RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	QRI5	P32344	111 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	PAU15	P40585	124 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	YFR045W	P43617	309 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	RDS3	Q06835	107 aa	Predicted RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	YOR105W	Q08504	108 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	DAD1	Q12248	94 aa		3.15	□□□□□ -1.91
RRP40	YOL142W	UTP23	Q12339	254 aa	Known RBP	3.15	□□□□□ -1.91
RRP40	YOL142W	ADH3	P07246	375 aa	Known RBP	3.14	□□□□□ -1.91
RRP40	YOL142W	MRPL31	P14063	131 aa	Predicted RBP	3.14	□□□□□ -1.91
RRP40	YOL142W	ATG8	P38182	117 aa	RIP-Chip data	3.14	□□□□□ -1.91	not detected
RRP40	YOL142W	VMA21	P41806	77 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	DAN1	P47178	298 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	HHO1	P53551	258 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	DAD3	P69850	94 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	SMT3	Q12306	101 aa	Known RBP	3.14	□□□□□ -1.91
RRP40	YOL142W	DCN1	Q12395	269 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	YCL001W-B	Q96VH2	84 aa		3.14	□□□□□ -1.91
RRP40	YOL142W	HSP10	P38910	106 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	COX16	P47081	118 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	MGA1	P53050	456 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	YGR026W	P53217	278 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	GIM5	Q04493	163 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	TIM22	Q12328	207 aa		3.13	□□□□□ -1.91
RRP40	YOL142W	HMRA1	P0CY11	126 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	NHP6A	P11632	93 aa	Known RBP	3.12	□□□□□ -1.91
RRP40	YOL142W	YGL010W	P25338	174 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	RPB11	P38902	120 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	YGL118C	P53132	145 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	BRP1	P53194	125 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	APS2	Q00381	147 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	UPS3	Q04006	179 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	ARC18	Q05933	178 aa	Known RBP	3.12	□□□□□ -1.91
RRP40	YOL142W	YBR200W-A	Q3E755	54 aa		3.12	□□□□□ -1.91
RRP40	YOL142W	MDN1	Q12019	4910 aa	Known RBP	3.11	□□□□□ -1.91
RRP40	YOL142W	RPL16B	P26785	198 aa	Known RBP	3.11	□□□□□ -1.91
RRP40	YOL142W	PAM17	P36147	197 aa		3.11	□□□□□ -1.91
RRP40	YOL142W	PAU5	P43575	122 aa		3.11	□□□□□ -1.91
RRP40	YOL142W	YJL144W	P47009	104 aa		3.11	□□□□□ -1.91
RRP40	YOL142W	YDR366C	P87287	132 aa		3.11	□□□□□ -1.91
RRP40	YOL142W	VAM10	Q08474	114 aa		3.11	□□□□□ -1.91
RRP40	YOL142W	YCR001W	P25347	104 aa		3.1	□□□□□ -1.91
RRP40	YOL142W	YBR013C	P38215	129 aa		3.1	□□□□□ -1.91
RRP40	YOL142W	PET8	P38921	284 aa		3.1	□□□□□ -1.91
RRP40	YOL142W	AIM34	Q03673	198 aa		3.1	□□□□□ -1.91
RRP40	YOL142W	SNU23	Q12368	194 aa	Predicted RBP	3.1	□□□□□ -1.91
RRP40	YOL142W	YNR034W-A	Q3E841	98 aa		3.1	□□□□□ -1.91
RRP40	YOL142W	Q0255	P03881	472 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	PAU7	P39545	55 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	NSE4	P43124	402 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	YGR017W	P53210	297 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	GPI19	Q04082	140 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	GTO3	Q04806	366 aa		3.09	□□□□□ -1.91
RRP40	YOL142W	RPL27A	P0C2H6	136 aa	Known RBP	3.08	□□□□□ -1.92
RRP40	YOL142W	PAU19	P0CE85	124 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	PAU21	P0CE86	164 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	PAU22	P0CE87	164 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	YCR023C	P25351	611 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	PAU3	P25610	124 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	ZRT1	P32804	376 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	THG1	P53215	237 aa	Known RBP	3.08	□□□□□ -1.92
RRP40	YOL142W	SGF11	Q03067	99 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	CSM4	Q08955	156 aa		3.08	□□□□□ -1.92
RRP40	YOL142W	RPL18A	P0CX49	186 aa	Known RBP	3.07	□□□□□ -1.92
RRP40	YOL142W	RPL18B	P0CX50	186 aa	Known RBP	3.07	□□□□□ -1.92
RRP40	YOL142W	YKR032W	P36127	104 aa		3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 25.5 ms