RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W FUB1P25659 250 aa6.53□□□□□ -1.36
UFD1YGR048W YEL067CP39978 195 aa6.53□□□□□ -1.36
UFD1YGR048W HUA1P40325 198 aa6.53□□□□□ -1.36
UFD1YGR048W YFR057WP43625 151 aa6.53□□□□□ -1.36
UFD1YGR048W NCA3P46955 337 aa6.53□□□□□ -1.36
UFD1YGR048W TOM7P53507 60 aa6.53□□□□□ -1.36
UFD1YGR048W YLR112WQ12130 139 aa6.53□□□□□ -1.36
UFD1YGR048W YGL258W-AQ3E740 77 aa6.53□□□□□ -1.36
UFD1YGR048W YHR214C-EQ8TGK0 99 aa6.53□□□□□ -1.36
UFD1YGR048W CYR1P08678 2026 aaKnown RBP6.53□□□□□ -1.36
UFD1YGR048W FPR2P32472 135 aa6.52□□□□□ -1.37
UFD1YGR048W SVP26P38869 228 aa6.52□□□□□ -1.37
UFD1YGR048W MIX14Q04341 121 aa6.52□□□□□ -1.37
UFD1YGR048W SHH4Q06236 168 aa6.52□□□□□ -1.37
UFD1YGR048W YPL261CQ08976 102 aa6.52□□□□□ -1.37
UFD1YGR048W DSE2P38844 325 aa6.51□□□□□ -1.37
UFD1YGR048W SGN1P40561 250 aaKnown RBP RIP-Chip data6.51□□□□□ -1.37not detected
UFD1YGR048W VEL1P53058 206 aa6.51□□□□□ -1.37
UFD1YGR048W YMR254CQ04838 102 aa6.51□□□□□ -1.37
UFD1YGR048W YLR042CQ07990 161 aa6.51□□□□□ -1.37
UFD1YGR048W RPL32P38061 130 aaKnown RBP6.5□□□□□ -1.37
UFD1YGR048W ADH5P38113 351 aaKnown RBP6.5□□□□□ -1.37
UFD1YGR048W YHL018WP38744 120 aaPredicted RBP6.5□□□□□ -1.37
UFD1YGR048W MST27P53176 234 aa6.5□□□□□ -1.37
UFD1YGR048W FHN1P53279 174 aa6.5□□□□□ -1.37
UFD1YGR048W YHP1Q04116 353 aa6.5□□□□□ -1.37
UFD1YGR048W RPC11Q04307 110 aaPredicted RBP6.5□□□□□ -1.37
UFD1YGR048W VPS63O13549 108 aa6.49□□□□□ -1.37
UFD1YGR048W TRP1P00912 224 aa6.49□□□□□ -1.37
UFD1YGR048W RPS8AP0CX39 200 aaKnown RBP6.49□□□□□ -1.37
UFD1YGR048W RPS8BP0CX40 200 aaKnown RBP6.49□□□□□ -1.37
UFD1YGR048W YKR032WP36127 104 aa6.49□□□□□ -1.37
UFD1YGR048W LTP1P40347 161 aa6.49□□□□□ -1.37
UFD1YGR048W YFL051CP43552 160 aa6.49□□□□□ -1.37
UFD1YGR048W MGR2Q02889 113 aa6.49□□□□□ -1.37
UFD1YGR048W GPI19Q04082 140 aa6.49□□□□□ -1.37
UFD1YGR048W YMR317WQ04893 1140 aa6.49□□□□□ -1.37
UFD1YGR048W RXT3Q07458 294 aa6.49□□□□□ -1.37
UFD1YGR048W IGO2Q9P305 131 aa6.49□□□□□ -1.37
UFD1YGR048W YGR164WP53291 111 aa6.48□□□□□ -1.37
UFD1YGR048W YDR102CQ03864 110 aa6.48□□□□□ -1.37
UFD1YGR048W YMR320WQ04897 101 aa6.48□□□□□ -1.37
UFD1YGR048W YMR31P19955 123 aa6.47□□□□□ -1.37
UFD1YGR048W YER079WP40052 210 aaKnown RBP6.47□□□□□ -1.37
UFD1YGR048W YIA6P40556 373 aa6.47□□□□□ -1.37
UFD1YGR048W TIM22Q12328 207 aa6.47□□□□□ -1.37
UFD1YGR048W YDR381C-AQ3E6R5 114 aa6.47□□□□□ -1.37
UFD1YGR048W YDL022C-AP0C5L6 82 aa6.46□□□□□ -1.38
UFD1YGR048W AQY1P0CD91 305 aa6.46□□□□□ -1.38
UFD1YGR048W YNL194CP40169 301 aa6.46□□□□□ -1.38
UFD1YGR048W TIM10P87108 93 aa6.46□□□□□ -1.38
UFD1YGR048W PCL2P25693 308 aa6.45□□□□□ -1.38
UFD1YGR048W DAD4P69851 72 aa6.45□□□□□ -1.38
UFD1YGR048W SDC1Q03323 175 aa6.45□□□□□ -1.38
UFD1YGR048W PFY1P07274 126 aa6.44□□□□□ -1.38
UFD1YGR048W VTC1P40046 129 aaRIP-Chip data6.44□□□□□ -1.38not detected
UFD1YGR048W SWS2P53937 143 aa6.44□□□□□ -1.38
UFD1YGR048W IRC23Q08416 157 aa6.44□□□□□ -1.38
UFD1YGR048W KSH1Q8TGJ3 72 aa6.44□□□□□ -1.38
UFD1YGR048W PBI2P0CT04 75 aaKnown RBP6.43□□□□□ -1.38
UFD1YGR048W FMP46P36141 133 aaKnown RBP6.43□□□□□ -1.38
UFD1YGR048W RRT13P40042 185 aa6.43□□□□□ -1.38
UFD1YGR048W HNT3Q08702 217 aa6.43□□□□□ -1.38
UFD1YGR048W NIP7Q08962 181 aaKnown RBP6.43□□□□□ -1.38
UFD1YGR048W YKL183C-AQ3E765 70 aa6.43□□□□□ -1.38
UFD1YGR048W YMR175W-AQ3E766 64 aa6.43□□□□□ -1.38
UFD1YGR048W COA3Q3E7B2 85 aa6.43□□□□□ -1.38
UFD1YGR048W YAL064W-BO13512 126 aa6.42□□□□□ -1.38
UFD1YGR048W HMRA2P0CY13 119 aa6.42□□□□□ -1.38
UFD1YGR048W ARF1P11076 181 aaKnown RBP6.42□□□□□ -1.38
UFD1YGR048W LYS1P38998 373 aaRIP-Chip data6.42□□□□□ -1.38not detected
UFD1YGR048W MBB1P39534 108 aa6.42□□□□□ -1.38
UFD1YGR048W GLE2P40066 365 aa6.42□□□□□ -1.38
UFD1YGR048W SIM1P40472 476 aa6.42□□□□□ -1.38
UFD1YGR048W MOT3P54785 490 aaKnown RBP6.42□□□□□ -1.38
UFD1YGR048W YLR194CQ05777 254 aa6.42□□□□□ -1.38
UFD1YGR048W YOR029WQ12243 111 aa6.42□□□□□ -1.38
UFD1YGR048W RPL42AP0CX27 106 aaKnown RBP6.41□□□□□ -1.38
UFD1YGR048W RPL42BP0CX28 106 aaKnown RBP6.41□□□□□ -1.38
UFD1YGR048W YIL029CP40538 142 aa6.41□□□□□ -1.38
UFD1YGR048W TOS6P48560 102 aa6.41□□□□□ -1.38
UFD1YGR048W TRS23Q03784 219 aa6.41□□□□□ -1.38
UFD1YGR048W YNL277W-AQ3E7Z0 62 aa6.41□□□□□ -1.38
UFD1YGR048W HSP150P32478 413 aa6.4□□□□□ -1.38
UFD1YGR048W IES6P32617 166 aa6.4□□□□□ -1.38
UFD1YGR048W ATP23P53722 227 aa6.4□□□□□ -1.38
UFD1YGR048W YSF3P0C074 85 aaPredicted RBP6.39□□□□□ -1.39
UFD1YGR048W RPL18AP0CX49 186 aaKnown RBP6.39□□□□□ -1.39
UFD1YGR048W RPL18BP0CX50 186 aaKnown RBP6.39□□□□□ -1.39
UFD1YGR048W AGA1P32323 725 aa6.39□□□□□ -1.39
UFD1YGR048W YSY6P38374 65 aa6.39□□□□□ -1.39
UFD1YGR048W VHS2P40463 436 aa6.39□□□□□ -1.39
UFD1YGR048W AIM19P40502 157 aa6.39□□□□□ -1.39
UFD1YGR048W SFT1P43682 97 aa6.39□□□□□ -1.39
UFD1YGR048W EMC6Q12431 108 aa6.39□□□□□ -1.39
UFD1YGR048W YER187WP40102 141 aa6.38□□□□□ -1.39
UFD1YGR048W YMR141CP40211 102 aa6.38□□□□□ -1.39
UFD1YGR048W HSK3P69852 69 aa6.38□□□□□ -1.39
UFD1YGR048W BET1P22804 142 aa6.37□□□□□ -1.39
UFD1YGR048W LDB16P25587 256 aa6.37□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 63.2 ms