RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	TY1B-DR3	Q99231	1755 aa		4.35	□□□□□ -1.71
TFB4	YPR056W	MRPL11	P36521	249 aa	Predicted RBP	4.34	□□□□□ -1.71
TFB4	YPR056W	ERV14	P53173	138 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	YNR077C	P53758	84 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	PIR1	Q03178	341 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	UPS3	Q04006	179 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	GPI19	Q04082	140 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	YDL241W	Q07738	123 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	YOS1	Q3E834	85 aa		4.34	□□□□□ -1.71
TFB4	YPR056W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.33	□□□□□ -1.72
TFB4	YPR056W	FYV5	P25585	152 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	MIG1	P27705	504 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	GPI11	Q06636	219 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	IRC19	Q07843	230 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	YOR015W	Q12169	119 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	COA6	Q3E846	104 aa		4.33	□□□□□ -1.72
TFB4	YPR056W	MRPL44	P19956	98 aa		4.32	□□□□□ -1.72
TFB4	YPR056W	PHO88	P38264	188 aa	Predicted RBP	4.32	□□□□□ -1.72
TFB4	YPR056W	YPL067C	Q02754	198 aa		4.32	□□□□□ -1.72
TFB4	YPR056W	YLR422W	Q06409	1932 aa		4.32	□□□□□ -1.72
TFB4	YPR056W	RPS19A	P07280	144 aa	Known RBP	4.31	□□□□□ -1.72
TFB4	YPR056W	RPS19B	P07281	144 aa	Predicted RBP	4.31	□□□□□ -1.72
TFB4	YPR056W	YEL045C	P32616	141 aa		4.31	□□□□□ -1.72
TFB4	YPR056W	FMT1	P32785	401 aa		4.31	□□□□□ -1.72
TFB4	YPR056W	YML079W	Q03629	201 aa		4.31	□□□□□ -1.72
TFB4	YPR056W	ATG41	Q12048	136 aa		4.31	□□□□□ -1.72
TFB4	YPR056W	ATG40	Q99325	256 aa		4.31	□□□□□ -1.72
TFB4	YPR056W	ECM12	O13529	151 aa		4.3	□□□□□ -1.72
TFB4	YPR056W	KRE9	P39005	276 aa		4.3	□□□□□ -1.72
TFB4	YPR056W	YEL067C	P39978	195 aa		4.3	□□□□□ -1.72
TFB4	YPR056W	MSL1	P40567	111 aa	Predicted RBP	4.3	□□□□□ -1.72
TFB4	YPR056W	EMC5	P40540	141 aa		4.29	□□□□□ -1.72
TFB4	YPR056W	RPL33B	P41056	107 aa	Known RBP	4.29	□□□□□ -1.72
TFB4	YPR056W	MIX14	Q04341	121 aa		4.29	□□□□□ -1.72
TFB4	YPR056W	SEN15	Q04675	128 aa		4.29	□□□□□ -1.72
TFB4	YPR056W	RPS23A	P0CX29	145 aa	Known RBP	4.28	□□□□□ -1.72
TFB4	YPR056W	RPS23B	P0CX30	145 aa		4.28	□□□□□ -1.72
TFB4	YPR056W	HUR1	P45820	110 aa		4.28	□□□□□ -1.72
TFB4	YPR056W	YPR013C	Q12145	317 aa		4.28	□□□□□ -1.72
TFB4	YPR056W	YRF1-2	P40105	1681 aa		4.27	□□□□□ -1.73
TFB4	YPR056W	YGR269W	P40326	108 aa		4.27	□□□□□ -1.73
TFB4	YPR056W	PEP8	P40335	379 aa		4.27	□□□□□ -1.73
TFB4	YPR056W	ELP6	Q04868	273 aa		4.27	□□□□□ -1.73
TFB4	YPR056W	NMA1	Q06178	401 aa	Known RBP	4.27	□□□□□ -1.73
TFB4	YPR056W	YLR236C	A0A023PZG4	107 aa		4.26	□□□□□ -1.73
TFB4	YPR056W	HPA3	P39979	161 aa		4.26	□□□□□ -1.73
TFB4	YPR056W	YJL027C	P47063	138 aa	Predicted RBP	4.26	□□□□□ -1.73
TFB4	YPR056W	IGO1	P53897	168 aa		4.26	□□□□□ -1.73
TFB4	YPR056W	HRT1	Q08273	121 aa		4.26	□□□□□ -1.73
TFB4	YPR056W	PAU21	P0CE86	164 aa		4.25	□□□□□ -1.73
TFB4	YPR056W	PAU22	P0CE87	164 aa		4.25	□□□□□ -1.73
TFB4	YPR056W	YER187W	P40102	141 aa		4.25	□□□□□ -1.73
TFB4	YPR056W	VMA21	P41806	77 aa		4.25	□□□□□ -1.73
TFB4	YPR056W	RPA190	P10964	1664 aa	Known RBP	4.25	□□□□□ -1.73
TFB4	YPR056W	MSB2	P32334	1306 aa		4.24	□□□□□ -1.73
TFB4	YPR056W	BOL2	P53082	120 aa		4.24	□□□□□ -1.73
TFB4	YPR056W	TMC1	Q08422	150 aa	Predicted RBP	4.24	□□□□□ -1.73
TFB4	YPR056W	HSP10	P38910	106 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	CIS3	P47001	227 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	YLR296W	Q05898	108 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	YPR153W	Q06537	140 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	YPR195C	Q06594	109 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	YPL261C	Q08976	102 aa		4.23	□□□□□ -1.73
TFB4	YPR056W	ROM2	P51862	1356 aa	Known RBP	4.23	□□□□□ -1.73
TFB4	YPR056W	MDM35	O60200	86 aa		4.22	□□□□□ -1.73
TFB4	YPR056W	CYB5	P40312	120 aa		4.22	□□□□□ -1.73
TFB4	YPR056W	RSM19	P53733	91 aa	Predicted RBP	4.22	□□□□□ -1.73
TFB4	YPR056W	CUE4	Q04201	117 aa	Predicted RBP	4.22	□□□□□ -1.73
TFB4	YPR056W	COA4	Q05809	96 aa		4.22	□□□□□ -1.73
TFB4	YPR056W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
TFB4	YPR056W	YKR045C	P36138	183 aa		4.21	□□□□□ -1.74
TFB4	YPR056W	NAT5	Q08689	176 aa		4.21	□□□□□ -1.74
TFB4	YPR056W	DAD1	Q12248	94 aa		4.21	□□□□□ -1.74
TFB4	YPR056W	YPK9	Q12697	1472 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	RPL40A	P0CH08	128 aa	Known RBP	4.2	□□□□□ -1.74
TFB4	YPR056W	RPL40B	P0CH09	128 aa	Known RBP	4.2	□□□□□ -1.74
TFB4	YPR056W	YBR209W	P38311	105 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	YHL018W	P38744	120 aa	Predicted RBP	4.2	□□□□□ -1.74
TFB4	YPR056W	YFL012W	P43580	148 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	DCV1	P43595	202 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	BRP1	P53194	125 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	YDL157C	Q12082	118 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	RRT15	Q3E811	62 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	SWR1	Q05471	1514 aa		4.2	□□□□□ -1.74
TFB4	YPR056W	NRG2	P38082	220 aa		4.19	□□□□□ -1.74
TFB4	YPR056W	YHR138C	P38841	114 aa	Predicted RBP	4.19	□□□□□ -1.74
TFB4	YPR056W	CWP2	P43497	92 aa		4.19	□□□□□ -1.74
TFB4	YPR056W	YPI1	P43587	155 aa		4.19	□□□□□ -1.74
TFB4	YPR056W	ESP1	Q03018	1630 aa		4.19	□□□□□ -1.74
TFB4	YPR056W	TY1B-DR4	Q07793	1604 aa		4.18	□□□□□ -1.74
TFB4	YPR056W	YGL149W	P53116	101 aa		4.18	□□□□□ -1.74
TFB4	YPR056W	PAU12	P53343	120 aa		4.18	□□□□□ -1.74
TFB4	YPR056W	OST5	Q92316	86 aa		4.18	□□□□□ -1.74
TFB4	YPR056W	NUP159	P40477	1460 aa		4.18	□□□□□ -1.74
TFB4	YPR056W	FUN14	P18411	198 aa		4.17	□□□□□ -1.74
TFB4	YPR056W	SVP26	P38869	228 aa		4.17	□□□□□ -1.74
TFB4	YPR056W	DAN1	P47178	298 aa		4.17	□□□□□ -1.74
TFB4	YPR056W	YDR042C	Q03205	200 aa		4.17	□□□□□ -1.74
TFB4	YPR056W	YHR213W-A	Q8TGT4	77 aa		4.17	□□□□□ -1.74
TFB4	YPR056W	COX8	P04039	78 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 109.7 ms