RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SGD1	YLR336C	SEN15	Q04675	128 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	RPL40A	P0CH08	128 aa	Known RBP	0.62	□□□□□ -2.31
SGD1	YLR336C	RPL40B	P0CH09	128 aa	Known RBP	0.62	□□□□□ -2.31
SGD1	YLR336C	YGR201C	P42936	225 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	YCL001W-A	P87012	153 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	YMR320W	Q04897	101 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	PDR10	P51533	1564 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	SMC4	Q12267	1418 aa		0.62	□□□□□ -2.31
SGD1	YLR336C	GPI2	P46961	280 aa		0.61	□□□□□ -2.31
SGD1	YLR336C	YNL122C	P53921	115 aa	Predicted RBP	0.61	□□□□□ -2.31
SGD1	YLR336C	ATP19	P81451	68 aa		0.61	□□□□□ -2.31
SGD1	YLR336C	SED1	Q01589	338 aa		0.61	□□□□□ -2.31
SGD1	YLR336C	PKR1	Q03880	122 aa	Known RBP	0.61	□□□□□ -2.31
SGD1	YLR336C	SEC16	P48415	2195 aa	Known RBP	0.61	□□□□□ -2.31
SGD1	YLR336C	HHY1	P39982	102 aa		0.61	□□□□□ -2.31
SGD1	YLR336C	MOG1	P47123	218 aa		0.61	□□□□□ -2.31
SGD1	YLR336C	EFM5	P53200	248 aa	Known RBP	0.61	□□□□□ -2.31
SGD1	YLR336C	RPL33A	P05744	107 aa	Known RBP	0.6	□□□□□ -2.31
SGD1	YLR336C	NHP6A	P11632	93 aa	Known RBP	0.6	□□□□□ -2.31
SGD1	YLR336C	RAV2	Q03956	351 aa		0.6	□□□□□ -2.31
SGD1	YLR336C	ROM2	P51862	1356 aa	Known RBP	0.6	□□□□□ -2.31
SGD1	YLR336C	FYV5	P25585	152 aa		0.6	□□□□□ -2.31
SGD1	YLR336C	YGL014C-A	P0C5N1	53 aa		0.59	□□□□□ -2.31
SGD1	YLR336C	YOR1	P53049	1477 aa		0.59	□□□□□ -2.31
SGD1	YLR336C	BCK1	Q01389	1478 aa		0.59	□□□□□ -2.31
SGD1	YLR336C	RPS1B	P23248	255 aa	Known RBP	0.59	□□□□□ -2.32
SGD1	YLR336C	MGR2	Q02889	113 aa		0.58	□□□□□ -2.32
SGD1	YLR336C	SOM1	Q05676	74 aa		0.58	□□□□□ -2.32
SGD1	YLR336C	PHB1	P40961	287 aa		0.58	□□□□□ -2.32
SGD1	YLR336C	YOR385W	Q08909	290 aa		0.58	□□□□□ -2.32
SGD1	YLR336C	MHF1	Q3E835	90 aa		0.58	□□□□□ -2.32
SGD1	YLR336C	HAP2	P06774	265 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	VMA10	P48836	114 aa	Known RBP	0.57	□□□□□ -2.32
SGD1	YLR336C	YHR213W-B	Q8TGK1	99 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	YRF1-3	P0CX14	1859 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	YRF1-7	P0CX15	1859 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	YRF1-6	P53819	1859 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	TY1B-DR4	Q07793	1604 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	SUI1	P32911	108 aa	Known RBP	0.57	□□□□□ -2.32
SGD1	YLR336C	HUT1	Q12520	339 aa		0.57	□□□□□ -2.32
SGD1	YLR336C	DDP1	Q99321	188 aa	Known RBP	0.57	□□□□□ -2.32
SGD1	YLR336C	FMP27	Q06179	2628 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	TEL1	P38110	2787 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	RPS22A	P0C0W1	130 aa	Known RBP	0.56	□□□□□ -2.32
SGD1	YLR336C	YDR366C	P87287	132 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.56	□□□□□ -2.32
SGD1	YLR336C	ECM5	Q03214	1411 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	DNF3	Q12674	1656 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	LSM1	P47017	172 aa	Known RBP	0.56	□□□□□ -2.32
SGD1	YLR336C	YMR122C	Q03879	124 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	RKR1	Q04781	1562 aa		0.56	□□□□□ -2.32
SGD1	YLR336C	TOP2	P06786	1428 aa	Known RBP	0.55	□□□□□ -2.32
SGD1	YLR336C	YOR072W	Q08486	104 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	PRM3	Q08931	133 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	BUD3	P25558	1636 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	GCN2	P15442	1659 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	RPS1A	P33442	255 aa	Known RBP	0.55	□□□□□ -2.32
SGD1	YLR336C	YHR140W	P38842	239 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	LST8	P41318	303 aa		0.55	□□□□□ -2.32
SGD1	YLR336C	COF1	Q03048	143 aa	Known RBP	0.55	□□□□□ -2.32
SGD1	YLR336C	ARO1	P08566	1588 aa	Known RBP	0.55	□□□□□ -2.32
SGD1	YLR336C	SRB8	P25648	1427 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	RBL2	P48606	106 aa	Known RBP	0.54	□□□□□ -2.32
SGD1	YLR336C	YNL019C	P53975	284 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	NMT1	P14743	455 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	TRS20	P38334	175 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	RAF1	Q06891	181 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	SPC3	Q12133	184 aa		0.54	□□□□□ -2.32
SGD1	YLR336C	YHR213W	P0CI67	198 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	FUN14	P18411	198 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	SRL3	P36167	246 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	LSM8	P47093	109 aa	Known RBP	0.53	□□□□□ -2.32
SGD1	YLR336C	NAT5	Q08689	176 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	SFT2	P38166	215 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	YAP3	P38749	330 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	HHO1	P53551	258 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	YPL067C	Q02754	198 aa		0.53	□□□□□ -2.32
SGD1	YLR336C	LAA1	P39526	2014 aa		0.53	□□□□□ -2.33
SGD1	YLR336C	STU1	P38198	1513 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	AIM4	P38305	123 aa	Predicted RBP	0.52	□□□□□ -2.33
SGD1	YLR336C	HPM1	P40481	377 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	BRP1	P53194	125 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	YGR039W	P53225	103 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	IRC21	Q04772	201 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	COA4	Q05809	96 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	UTP20	P35194	2493 aa	Known RBP	0.52	□□□□□ -2.33
SGD1	YLR336C	MMS22	Q06164	1454 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	YMR141C	P40211	102 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	TRM732	Q03496	1420 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	DYN1	P36022	4092 aa		0.52	□□□□□ -2.33
SGD1	YLR336C	UTP11	P34247	250 aa	Predicted RBP	0.51	□□□□□ -2.33
SGD1	YLR336C	YJL009W	P47078	108 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	SPG1	P50088	95 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	RTC6	O14464	93 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	YCR050C	P25630	102 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	RPL14A	P36105	138 aa	Known RBP	0.51	□□□□□ -2.33
SGD1	YLR336C	RPL14B	P38754	138 aa	Known RBP	0.51	□□□□□ -2.33
SGD1	YLR336C	YGL149W	P53116	101 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	QCR10	P37299	77 aa		0.51	□□□□□ -2.33
SGD1	YLR336C	YAL064W	P39711	94 aa		0.51	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 47.2 ms