RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W COX12Q01519 83 aa6.66□□□□□ -1.34
UFD1YGR048W YDR042CQ03205 200 aa6.66□□□□□ -1.34
UFD1YGR048W FCF1Q05498 189 aaPredicted RBP6.66□□□□□ -1.34
UFD1YGR048W MSA1Q08471 629 aa6.66□□□□□ -1.34
UFD1YGR048W YMR316C-AI2HB70 103 aa6.65□□□□□ -1.34
UFD1YGR048W YLR302CO13544 120 aa6.65□□□□□ -1.34
UFD1YGR048W RPS2P25443 254 aaKnown RBP6.65□□□□□ -1.34
UFD1YGR048W CSH1P38287 376 aa6.65□□□□□ -1.34
UFD1YGR048W YHR173CP38864 112 aa6.65□□□□□ -1.34
UFD1YGR048W LCB3P47013 409 aa6.65□□□□□ -1.34
UFD1YGR048W RAF1Q06891 181 aa6.65□□□□□ -1.34
UFD1YGR048W IRC25Q07951 179 aa6.65□□□□□ -1.34
UFD1YGR048W MIM1Q08176 113 aa6.65□□□□□ -1.34
UFD1YGR048W YOR186WQ08560 144 aa6.65□□□□□ -1.34
UFD1YGR048W RDL2Q08742 149 aaKnown RBP6.65□□□□□ -1.34
UFD1YGR048W YDR029WQ12111 104 aa6.65□□□□□ -1.34
UFD1YGR048W SFT2P38166 215 aa6.64□□□□□ -1.35
UFD1YGR048W YHR180WP38868 163 aa6.64□□□□□ -1.35
UFD1YGR048W UPS1Q05776 175 aa6.64□□□□□ -1.35
UFD1YGR048W RRG8Q06109 277 aa6.64□□□□□ -1.35
UFD1YGR048W YOR343CQ12484 108 aa6.64□□□□□ -1.35
UFD1YGR048W INO2P26798 304 aa6.63□□□□□ -1.35
UFD1YGR048W YPS1P32329 569 aa6.63□□□□□ -1.35
UFD1YGR048W PAU7P39545 55 aa6.63□□□□□ -1.35
UFD1YGR048W ALG13P53178 202 aa6.63□□□□□ -1.35
UFD1YGR048W MRPL19P53875 158 aa6.63□□□□□ -1.35
UFD1YGR048W AIM11P87275 137 aa6.63□□□□□ -1.35
UFD1YGR048W MRPL31P14063 131 aaPredicted RBP6.62□□□□□ -1.35
UFD1YGR048W KNH1P50112 268 aa6.62□□□□□ -1.35
UFD1YGR048W YHM2Q04013 314 aa6.62□□□□□ -1.35
UFD1YGR048W LSM6Q06406 86 aaKnown RBP6.62□□□□□ -1.35
UFD1YGR048W FCY1Q12178 158 aa6.62□□□□□ -1.35
UFD1YGR048W YOR097CQ12274 175 aaPredicted RBP6.62□□□□□ -1.35
UFD1YGR048W YPS3Q12303 508 aa6.62□□□□□ -1.35
UFD1YGR048W YLR111WQ12528 110 aa6.62□□□□□ -1.35
UFD1YGR048W KTI11Q3E840 82 aa6.62□□□□□ -1.35
UFD1YGR048W HST4P53688 370 aa6.61□□□□□ -1.35
UFD1YGR048W COF1Q03048 143 aaKnown RBP6.61□□□□□ -1.35
UFD1YGR048W FZF1P32805 299 aa6.6□□□□□ -1.35
UFD1YGR048W SWD3P38123 315 aa6.6□□□□□ -1.35
UFD1YGR048W MRPL49P40858 161 aaPredicted RBP6.6□□□□□ -1.35
UFD1YGR048W LST8P41318 303 aa6.6□□□□□ -1.35
UFD1YGR048W SKI6P46948 246 aaPredicted RBP6.6□□□□□ -1.35
UFD1YGR048W GON7P46984 123 aa6.6□□□□□ -1.35
UFD1YGR048W HNT2P49775 206 aa6.6□□□□□ -1.35
UFD1YGR048W UBC11P52492 156 aa6.6□□□□□ -1.35
UFD1YGR048W NCE101Q02820 53 aa6.6□□□□□ -1.35
UFD1YGR048W YMR103CQ04436 120 aa6.6□□□□□ -1.35
UFD1YGR048W CDC39P25655 2108 aaKnown RBP6.59□□□□□ -1.35
UFD1YGR048W HSP12P22943 109 aaKnown RBP6.59□□□□□ -1.35
UFD1YGR048W IMP1P28627 190 aa6.59□□□□□ -1.35
UFD1YGR048W GPI18P38211 433 aa6.59□□□□□ -1.35
UFD1YGR048W YHL042WP38729 150 aa6.59□□□□□ -1.35
UFD1YGR048W SUT2Q12286 268 aa6.59□□□□□ -1.35
UFD1YGR048W YCL021W-AQ96VH3 125 aa6.59□□□□□ -1.35
UFD1YGR048W Q0255P03881 472 aa6.58□□□□□ -1.36
UFD1YGR048W TOM6P33448 61 aa6.58□□□□□ -1.36
UFD1YGR048W YHR140WP38842 239 aa6.58□□□□□ -1.36
UFD1YGR048W YNL208WP40159 199 aaKnown RBP6.58□□□□□ -1.36
UFD1YGR048W PIS1P06197 220 aaKnown RBP6.57□□□□□ -1.36
UFD1YGR048W RPL30P14120 105 aaKnown RBP6.57□□□□□ -1.36
UFD1YGR048W YCR006CP25350 157 aa6.57□□□□□ -1.36
UFD1YGR048W NRG2P38082 220 aa6.57□□□□□ -1.36
UFD1YGR048W FIP1P45976 327 aa6.57□□□□□ -1.36
UFD1YGR048W CIS3P47001 227 aa6.57□□□□□ -1.36
UFD1YGR048W YOL118CQ08259 102 aa6.57□□□□□ -1.36
UFD1YGR048W DAP1Q12091 152 aa6.57□□□□□ -1.36
UFD1YGR048W YKL070WP36087 169 aa6.56□□□□□ -1.36
UFD1YGR048W RPS26AP39938 119 aaKnown RBP6.56□□□□□ -1.36
UFD1YGR048W RPS26BP39939 119 aaKnown RBP6.56□□□□□ -1.36
UFD1YGR048W RHO5P53879 331 aaKnown RBP6.56□□□□□ -1.36
UFD1YGR048W VPS68Q12016 184 aa6.56□□□□□ -1.36
UFD1YGR048W BOL1Q3E793 110 aa6.56□□□□□ -1.36
UFD1YGR048W YHR139C-AO13536 103 aa6.55□□□□□ -1.36
UFD1YGR048W MDM35O60200 86 aa6.55□□□□□ -1.36
UFD1YGR048W TVP23P38962 199 aa6.55□□□□□ -1.36
UFD1YGR048W YNL217WP40152 326 aa6.55□□□□□ -1.36
UFD1YGR048W OST1P41543 476 aaKnown RBP6.55□□□□□ -1.36
UFD1YGR048W VPS55P47111 140 aa6.55□□□□□ -1.36
UFD1YGR048W IRC19Q07843 230 aa6.55□□□□□ -1.36
UFD1YGR048W FIT2Q08906 153 aa6.55□□□□□ -1.36
UFD1YGR048W YOR192C-CQ3E736 78 aa6.55□□□□□ -1.36
UFD1YGR048W YPL038W-AQ3E7B4 63 aa6.55□□□□□ -1.36
UFD1YGR048W MRS3P10566 314 aa6.54□□□□□ -1.36
UFD1YGR048W TOM40P23644 387 aaKnown RBP6.54□□□□□ -1.36
UFD1YGR048W REC104P33323 182 aa6.54□□□□□ -1.36
UFD1YGR048W KTI12P34253 313 aaKnown RBP6.54□□□□□ -1.36
UFD1YGR048W SMP1P38128 452 aa6.54□□□□□ -1.36
UFD1YGR048W PET8P38921 284 aa6.54□□□□□ -1.36
UFD1YGR048W YFR054CP43622 192 aa6.54□□□□□ -1.36
UFD1YGR048W EAF6P47128 113 aa6.54□□□□□ -1.36
UFD1YGR048W UBC13P52490 153 aa6.54□□□□□ -1.36
UFD1YGR048W YNR077CP53758 84 aa6.54□□□□□ -1.36
UFD1YGR048W API2Q04413 109 aa6.54□□□□□ -1.36
UFD1YGR048W DAD1Q12248 94 aa6.54□□□□□ -1.36
UFD1YGR048W YLR412C-AQ3E742 68 aa6.54□□□□□ -1.36
UFD1YGR048W RPL2AP0CX45 254 aaKnown RBP6.53□□□□□ -1.36
UFD1YGR048W RPL2BP0CX46 254 aaKnown RBP6.53□□□□□ -1.36
UFD1YGR048W ROX3P25046 220 aa6.53□□□□□ -1.36
UFD1YGR048W YCR050CP25630 102 aa6.53□□□□□ -1.36
Retrieved 100 of 5,963 RNA–protein pairs in 60.9 ms