RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCD1	YDR499W	NAT5	Q08689	176 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	COA6	Q3E846	104 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	DDP1	Q99321	188 aa	Known RBP	0.25	□□□□□ -2.37
LCD1	YDR499W	GSC2	P40989	1895 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	RPL40A	P0CH08	128 aa	Known RBP	0.25	□□□□□ -2.37
LCD1	YDR499W	RPL40B	P0CH09	128 aa	Known RBP	0.25	□□□□□ -2.37
LCD1	YDR499W	ANB1	P19211	157 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	SFT2	P38166	215 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	LSM8	P47093	109 aa	Known RBP	0.25	□□□□□ -2.37
LCD1	YDR499W	YDR366C	P87287	132 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	YPL067C	Q02754	198 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	YMR320W	Q04897	101 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	YOR034C-A	Q3E735	80 aa		0.25	□□□□□ -2.37
LCD1	YDR499W	YOR1	P53049	1477 aa		0.24	□□□□□ -2.37
LCD1	YDR499W	FUN14	P18411	198 aa		0.24	□□□□□ -2.37
LCD1	YDR499W	ARC19	P33204	171 aa	Known RBP	0.24	□□□□□ -2.37
LCD1	YDR499W	RPS1A	P33442	255 aa	Known RBP	0.24	□□□□□ -2.37
LCD1	YDR499W	YGL149W	P53116	101 aa		0.24	□□□□□ -2.37
LCD1	YDR499W	YMR321C	Q04898	105 aa		0.24	□□□□□ -2.37
LCD1	YDR499W	EMC4	P53073	190 aa		0.23	□□□□□ -2.37
LCD1	YDR499W	YBR013C	P38215	129 aa		0.23	□□□□□ -2.37
LCD1	YDR499W	AIM4	P38305	123 aa	Predicted RBP	0.23	□□□□□ -2.37
LCD1	YDR499W	MIC27	P50945	234 aa		0.23	□□□□□ -2.37
LCD1	YDR499W	BLM10	P43583	2143 aa		0.23	□□□□□ -2.37
LCD1	YDR499W	MRPL44	P19956	98 aa		0.22	□□□□□ -2.37
LCD1	YDR499W	RBL2	P48606	106 aa	Known RBP	0.22	□□□□□ -2.37
LCD1	YDR499W	SPG1	P50088	95 aa		0.22	□□□□□ -2.37
LCD1	YDR499W	BRP1	P53194	125 aa		0.22	□□□□□ -2.37
LCD1	YDR499W	EFM5	P53200	248 aa	Known RBP	0.22	□□□□□ -2.37
LCD1	YDR499W	YLR296W	Q05898	108 aa		0.22	□□□□□ -2.37
LCD1	YDR499W	SPC3	Q12133	184 aa		0.22	□□□□□ -2.37
LCD1	YDR499W	RTC6	O14464	93 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	PFY1	P07274	126 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	YSF3	P0C074	85 aa	Predicted RBP	0.21	□□□□□ -2.38
LCD1	YDR499W	MRPL11	P36521	249 aa	Predicted RBP	0.21	□□□□□ -2.38
LCD1	YDR499W	HHO1	P53551	258 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	COF1	Q03048	143 aa	Known RBP	0.21	□□□□□ -2.38
LCD1	YDR499W	GTT2	Q12390	233 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	TY4B-J	P47024	1803 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	RPC19	P28000	142 aa	Known RBP	0.21	□□□□□ -2.38
LCD1	YDR499W	QCR10	P37299	77 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	YGR039W	P53225	103 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	SNT2	P53127	1403 aa		0.21	□□□□□ -2.38
LCD1	YDR499W	PAU21	P0CE86	164 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	PAU22	P0CE87	164 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	HAP3	P13434	144 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	RPL14A	P36105	138 aa	Known RBP	0.2	□□□□□ -2.38
LCD1	YDR499W	RPL14B	P38754	138 aa	Known RBP	0.2	□□□□□ -2.38
LCD1	YDR499W	AIM18	P38884	321 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	YAL064W	P39711	94 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	HPM1	P40481	377 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	LDB18	Q07887	179 aa		0.2	□□□□□ -2.38
LCD1	YDR499W	QCR6	P00127	147 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	YCR050C	P25630	102 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	SDH7	Q04401	133 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	GSP1	P32835	219 aa	Known RBP	0.19	□□□□□ -2.38
LCD1	YDR499W	HSP10	P38910	106 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	ELC1	Q03071	99 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	YLR194C	Q05777	254 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	ATP14	Q12349	124 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	MED11	Q99278	115 aa		0.19	□□□□□ -2.38
LCD1	YDR499W	BNI1	P41832	1953 aa		0.18	□□□□□ -2.38
LCD1	YDR499W	MRPL31	P14063	131 aa	Predicted RBP	0.18	□□□□□ -2.38
LCD1	YDR499W	PRS3	P38689	320 aa	Known RBP	0.18	□□□□□ -2.38
LCD1	YDR499W	YAP3	P38749	330 aa		0.18	□□□□□ -2.38
LCD1	YDR499W	FCF2	Q12035	217 aa	Predicted RBP	0.18	□□□□□ -2.38
LCD1	YDR499W	YRF1-3	P0CX14	1859 aa		0.18	□□□□□ -2.38
LCD1	YDR499W	YRF1-7	P0CX15	1859 aa		0.18	□□□□□ -2.38
LCD1	YDR499W	POR2	P40478	281 aa		0.18	□□□□□ -2.38
LCD1	YDR499W	TY1B-H	O13535	1793 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	EMP24	P32803	203 aa	Known RBP	0.17	□□□□□ -2.38
LCD1	YDR499W	TRS20	P38334	175 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	YIL163C	P40448	117 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	SEC16	P48415	2195 aa	Known RBP	0.17	□□□□□ -2.38
LCD1	YDR499W	SRX1	P36077	127 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	TVP18	Q04767	167 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	SNF2	P22082	1703 aa		0.17	□□□□□ -2.38
LCD1	YDR499W	RPL36B	O14455	100 aa	Known RBP	0.16	□□□□□ -2.38
LCD1	YDR499W	RPL36A	P05745	100 aa	Predicted RBP	0.16	□□□□□ -2.38
LCD1	YDR499W	YJR128W	P47162	119 aa		0.16	□□□□□ -2.38
LCD1	YDR499W	YGR017W	P53210	297 aa		0.16	□□□□□ -2.38
LCD1	YDR499W	CSN9	Q03981	162 aa		0.16	□□□□□ -2.38
LCD1	YDR499W	SUA7	P29055	345 aa	Predicted RBP	0.15	□□□□□ -2.38
LCD1	YDR499W	ENV10	Q99382	181 aa		0.15	□□□□□ -2.38
LCD1	YDR499W	BRR2	P32639	2163 aa	Known RBP	0.15	□□□□□ -2.38
LCD1	YDR499W	TAO3	P40468	2376 aa		0.15	□□□□□ -2.38
LCD1	YDR499W	AUA1	P32450	94 aa		0.15	□□□□□ -2.39
LCD1	YDR499W	HYM1	P32464	399 aa		0.15	□□□□□ -2.39
LCD1	YDR499W	PHS1	P40857	217 aa		0.15	□□□□□ -2.39
LCD1	YDR499W	HPA2	Q06592	156 aa		0.15	□□□□□ -2.39
LCD1	YDR499W	YNL277W-A	Q3E7Z0	62 aa		0.15	□□□□□ -2.39
LCD1	YDR499W	GIM4	P40005	111 aa	Known RBP	0.14	□□□□□ -2.39
LCD1	YDR499W	YFR035C	P43608	114 aa		0.14	□□□□□ -2.39
LCD1	YDR499W	ERV14	P53173	138 aa		0.14	□□□□□ -2.39
LCD1	YDR499W	RPS29B	P41058	56 aa	Known RBP	0.14	□□□□□ -2.39
LCD1	YDR499W	ARL3	Q02804	198 aa		0.14	□□□□□ -2.39
LCD1	YDR499W	YGR240C-A	Q3E786	66 aa		0.14	□□□□□ -2.39
LCD1	YDR499W	LCL1	Q02786	101 aa		0.13	□□□□□ -2.39
LCD1	YDR499W	TRM732	Q03496	1420 aa		0.13	□□□□□ -2.39
LCD1	YDR499W	RPL22A	P05749	121 aa	Known RBP	0.13	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 41.6 ms