RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	WWM1	P43582	211 aa	Known RBP	2.69	□□□□□ -1.98
NUP60	YAR002W	YJL027C	P47063	138 aa	Predicted RBP	2.69	□□□□□ -1.98
NUP60	YAR002W	ABM1	P47146	123 aa		2.69	□□□□□ -1.98
NUP60	YAR002W	GLO1	P50107	326 aa		2.69	□□□□□ -1.98
NUP60	YAR002W	IZH1	Q03419	316 aa		2.69	□□□□□ -1.98
NUP60	YAR002W	YCR024C-B	Q3E7Z8	88 aa		2.69	□□□□□ -1.98
NUP60	YAR002W	HTB2	P02294	131 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	FUN14	P18411	198 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	FZF1	P32805	299 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	VMA11	P32842	164 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	AME1	P38313	324 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	GLE2	P40066	365 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	YFR045W	P43617	309 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	RPA43	P46669	326 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	SWT21	P53873	357 aa	Predicted RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	RPL15B	P54780	204 aa	Predicted RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	TIM18	Q08749	192 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	CYC3	P06182	269 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	SEC4	P07560	215 aa	Known RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	RPL31B	P0C2H9	113 aa	Known RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	MRPL31	P14063	131 aa	Predicted RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	MRPL44	P19956	98 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	MRPL20	P22354	195 aa	Predicted RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	VMA16	P23968	213 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	MBB1	P39534	108 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	SNU13	P39990	126 aa	Known RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	YMR141C	P40211	102 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	CDC40	P40968	455 aa	Predicted RBP	2.68	□□□□□ -1.98
NUP60	YAR002W	AIM24	P47127	394 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	TDA4	P47153	279 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	DUG3	P53871	357 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	DAD4	P69851	72 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	DAD1	Q12248	94 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	YBR126W-A	Q8TGU7	68 aa		2.68	□□□□□ -1.98
NUP60	YAR002W	ZRT1	P32804	376 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	GSP1	P32835	219 aa	Known RBP	2.67	□□□□□ -1.98
NUP60	YAR002W	GSP2	P32836	220 aa	Known RBP	2.67	□□□□□ -1.98
NUP60	YAR002W	YKL102C	P34249	101 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	PAU7	P39545	55 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	YER134C	P40081	178 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	POR2	P40478	281 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	DUO1	P53168	247 aa	Known RBP	2.67	□□□□□ -1.98
NUP60	YAR002W	SDS23	P53172	527 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	YGR219W	P53307	113 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	UBC7	Q02159	165 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	YMR317W	Q04893	1140 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	CSM4	Q08955	156 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	FYV7	Q12247	151 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	Q0297	Q9ZZV8	51 aa		2.67	□□□□□ -1.98
NUP60	YAR002W	RPL43A	P0CX25	92 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	RPL43B	P0CX26	92 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	RPL23A	P0CX41	137 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	RPL23B	P0CX42	137 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	PAU16	P35994	123 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	TEM1	P38987	245 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	SEC72	P39742	193 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	YGL118C	P53132	145 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	GEP3	Q08622	556 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	FSF1	Q12029	327 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	YLR112W	Q12130	139 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	POM33	Q12164	279 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	UTP23	Q12339	254 aa	Known RBP	2.66	□□□□□ -1.98
NUP60	YAR002W	YLR342W-A	Q3E810	57 aa		2.66	□□□□□ -1.98
NUP60	YAR002W	BPH1	P25356	2167 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	CPT1	P17898	393 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	PRS4	P38063	326 aa	Predicted RBP	2.65	□□□□□ -1.98
NUP60	YAR002W	MIC12	P38341	106 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	PRE5	P40302	234 aa	Known RBP	2.65	□□□□□ -1.98
NUP60	YAR002W	YJL028W	P47062	111 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	BRP1	P53194	125 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	THG1	P53215	237 aa	Known RBP	2.65	□□□□□ -1.98
NUP60	YAR002W	CAB4	P53332	305 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	ARC18	Q05933	178 aa	Known RBP	2.65	□□□□□ -1.98
NUP60	YAR002W	CNL1	Q06333	122 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	YOL160W	Q08321	113 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	WIP1	Q2V2P8	89 aa		2.65	□□□□□ -1.98
NUP60	YAR002W	ATP5	P09457	212 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	INO2	P26798	304 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	SNF11	P38956	169 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	YNL200C	P40165	246 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	YMR181C	Q03231	154 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	UPS3	Q04006	179 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	GTO3	Q04806	366 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	NAT5	Q08689	176 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	TPT1	Q12272	230 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	YDL085C-A	Q3E7B7	68 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	RPL27A	P0C2H6	136 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	RPL12A	P0CX53	165 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	RPL12B	P0CX54	165 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	CMC1	P36064	111 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	YNL194C	P40169	301 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	YPI1	P43587	155 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	LCB3	P47013	409 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	SAE3	P89114	91 aa		2.64	□□□□□ -1.99
NUP60	YAR002W	PKR1	Q03880	122 aa	Known RBP	2.64	□□□□□ -1.99
NUP60	YAR002W	RPL42A	P0CX27	106 aa	Known RBP	2.63	□□□□□ -1.99
NUP60	YAR002W	RPL42B	P0CX28	106 aa	Known RBP	2.63	□□□□□ -1.99
NUP60	YAR002W	SPI1	P40092	148 aa		2.63	□□□□□ -1.99
NUP60	YAR002W	COX16	P47081	118 aa		2.63	□□□□□ -1.99
NUP60	YAR002W	VPS55	P47111	140 aa		2.63	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 45 ms