RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GPNMBQ14956 572 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 UPP1Q16831 310 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 WSCD1Q658N2 575 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 DCUN1D2Q6PH85 259 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 MTERF4Q7Z6M4 381 aaKnown RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 FAM126BQ8IXS8 530 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 GSPT2Q8IYD1 628 aaKnown RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 SLC35F5Q8WV83 523 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 PIWIL1Q96J94 861 aaKnown RBP14.56□□□□□ -0.08
PTPRF-202ENST00000372405 DEFB118Q96PH6 123 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 SNX25Q9H3E2 840 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 ARFGAP3Q9NP61 516 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 USTQ9Y2C2 406 aa14.56□□□□□ -0.08
PTPRF-202ENST00000372405 TET1Q8NFU7 2136 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 C9IYK1 514 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 E5RJQ4 531 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 GABRDO14764 452 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 SASH3O75995 380 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 KRT3P12035 628 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 TAP1Q03518 808 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 LLGL1Q15334 1064 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 SIX1Q15475 284 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-202ENST00000372405 CCDC70Q6NSX1 233 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 CCNI2Q6ZMN8 369 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-202ENST00000372405 ANKS1BQ7Z6G8 1248 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 SLC13A5Q86YT5 568 aaPredicted RBP14.55□□□□□ -0.08
PTPRF-202ENST00000372405 ARFGAP1Q8N6T3 406 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 EMC1Q8N766 993 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 SENP8Q96LD8 212 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 SYNCQ9H7C4 482 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 ST7Q9NRC1 585 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 METTL5Q9NRN9 209 aaKnown RBP14.55□□□□□ -0.08
PTPRF-202ENST00000372405 RGS18Q9NS28 235 aa14.55□□□□□ -0.08
PTPRF-202ENST00000372405 PSTPIP1O43586 416 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 ATP2C2O75185 946 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 HEXIM1O94992 359 aaKnown RBP14.54□□□□□ -0.08
PTPRF-202ENST00000372405 TKTP29401 623 aaKnown RBP14.54□□□□□ -0.08
PTPRF-202ENST00000372405 RGS7P49802 495 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 PDE4CQ08493 712 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 TRADDQ15628 312 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 ATP13A4Q4VNC1 1196 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 SEL1L2Q5TEA6 688 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 KIAA0319Q5VV43 1072 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 TXNRD3NBQ6F5E7 133 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 TRNP1Q6NT89 227 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 CD300LGQ6UXG3 332 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 RHOT1Q8IXI2 618 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 NIPA2Q8N8Q9 360 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 PRELID2Q8N945 189 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 SLC4A5Q9BY07 1137 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 WDR35Q9P2L0 1181 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 ESYT3A0FGR9 886 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 BHMG1C9JSJ3 638 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-202ENST00000372405 ACAT1P24752 427 aaKnown RBP14.54□□□□□ -0.08
PTPRF-202ENST00000372405 AARSP49588 968 aaKnown RBP eCLIP14.54□□□□□ -0.083e-8■■■■■ 82.4
PTPRF-202ENST00000372405 FAM183BPQ6ZVS7 135 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 LRRC8DQ7L1W4 858 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 B3GALNT2Q8NCR0 500 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 RUBCNQ92622 972 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 PGBD4Q96DM1 585 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 NAP1L3Q99457 506 aaPredicted RBP14.54□□□□□ -0.08
PTPRF-202ENST00000372405 FUT8Q9BYC5 575 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 GDF3Q9NR23 364 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 AMACRQ9UHK6 382 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 OGDHLQ9ULD0 1010 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 INPP5FQ9Y2H2 1132 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 SCN5AQ14524 2016 aa14.54□□□□□ -0.08
PTPRF-202ENST00000372405 INPPL1O15357 1258 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 B4GALT3O60512 393 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 NBNO60934 754 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SKIP12755 728 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 CCL5P13501 91 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 ADORA2BP29275 332 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 RPL9P32969 192 aaKnown RBP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 PIGHQ14442 188 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 TIGD5Q53EQ6 642 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 FAM102AQ5T9C2 384 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 TMEM110Q86TL2 294 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 KATNAL2Q8IYT4 538 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 ANKRD52Q8NB46 1076 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SLC2A14Q8TDB8 520 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 FNIP1Q8TF40 1166 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 TIMM13Q9Y5L4 95 aaPredicted RBP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 FSCN2O14926 492 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 ERLIN1O75477 346 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SETSIPP0DME0 302 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 RARAP10276 462 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SELPP16109 830 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 MCM3P25205 808 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 GJC1P36383 396 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 FAM189BP81408 668 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 GUCY2DQ02846 1103 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 GRIK3Q13003 919 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 OLFML1Q6UWY5 402 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 PAQR9Q6ZVX9 377 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SLC24A5Q71RS6 500 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 FUKQ8N0W3 1084 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 IPO4Q8TEX9 1081 aaKnown RBP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 KHSRPQ92945 711 aaKnown RBP eCLIP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms